Wall clock time and date at job start Mon Mar 30 2020 03:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31952 * 120.19664 * 2 1 4 4 C 1.32450 * 122.55636 * 179.97438 * 3 2 1 5 5 C 1.47029 * 131.51213 * 180.02562 * 4 3 2 6 6 C 1.43203 * 126.64216 * 0.02562 * 5 4 3 7 7 N 5.33862 * 115.34520 * 0.04829 * 2 1 3 8 8 C 1.38206 * 106.71123 * 180.02562 * 5 4 3 9 9 N 1.35385 * 108.79235 * 0.02562 * 8 5 4 10 10 H 0.97005 * 125.09345 * 179.97438 * 9 8 5 11 11 N 1.36897 * 122.15744 * 0.11670 * 4 3 2 12 12 C 1.35145 * 120.01617 * 359.94652 * 11 4 3 13 13 O 1.21753 * 121.02164 * 179.97438 * 12 11 4 14 14 C 1.40812 * 120.19227 * 180.02562 * 2 1 3 15 15 C 1.40413 * 121.14666 * 0.02562 * 14 2 1 16 16 H 1.08001 * 120.00034 * 324.39955 * 15 14 2 17 17 C 1.39966 * 119.99920 * 144.40526 * 15 14 2 18 18 N 1.30920 * 120.00028 * 339.40157 * 17 15 14 19 19 Si 1.86801 * 120.00046 * 159.41148 * 17 15 14 20 20 H 1.48500 * 109.47018 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46949 * 119.99421 * 19 17 15 22 22 H 1.48504 * 109.46931 * 239.99318 * 19 17 15 23 23 H 1.09002 * 109.46881 * 269.94848 * 1 2 3 24 24 H 1.08999 * 109.46975 * 29.94822 * 1 2 3 25 25 H 1.08998 * 109.47220 * 149.94913 * 1 2 3 26 26 H 1.08002 * 125.59715 * 179.73532 * 8 5 4 27 27 H 0.96998 * 120.00375 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1707 1.1405 0.0000 4 6 3.4941 1.1950 0.0005 5 6 4.4224 2.3352 0.0011 6 6 4.0710 3.7234 0.0018 7 7 3.7923 4.8247 0.0041 8 6 5.6998 1.8076 0.0009 9 7 5.6136 0.4565 -0.0004 10 1 6.3702 -0.1506 -0.0012 11 7 4.2698 0.0670 -0.0013 12 6 3.6887 -1.1531 -0.0026 13 8 4.3609 -2.1683 -0.0047 14 6 2.2152 -1.2171 -0.0005 15 6 1.5417 -2.4492 -0.0016 16 1 0.6152 -2.5586 0.5424 17 6 2.0712 -3.5355 -0.7077 18 7 2.9349 -3.3323 -1.6704 19 14 1.5455 -5.2754 -0.2766 20 1 0.5675 -5.2346 0.8402 21 1 0.9170 -5.9108 -1.4625 22 1 2.7344 -6.0640 0.1357 23 1 -0.3633 -0.0009 1.0277 24 1 -0.3633 0.8904 -0.5130 25 1 -0.3633 -0.8895 -0.5146 26 1 6.6161 2.3793 -0.0029 27 1 3.3016 -4.0851 -2.1600 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261042747.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:52 Heat of formation + Delta-G solvation = 100.598198 kcal Electronic energy + Delta-G solvation = -16821.067943 eV Core-core repulsion = 13967.688380 eV Total energy + Delta-G solvation = -2853.379563 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.070 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.07273 -37.73802 -36.11492 -35.81926 -33.87950 -31.66147 -31.14498 -29.28187 -27.49444 -25.22103 -22.64198 -22.27450 -21.35283 -18.21157 -18.06724 -16.53408 -15.98377 -15.69812 -15.44151 -15.05379 -14.30609 -13.56417 -13.23765 -13.14461 -12.62817 -12.45696 -12.25244 -12.19815 -11.76292 -11.54198 -11.41674 -11.28687 -10.89314 -10.83482 -10.51228 -9.54526 -9.12508 -8.92638 -8.54917 -8.14105 -7.19608 -6.70517 -4.34730 1.51961 2.09549 2.12358 2.94957 3.00738 3.03824 3.20230 3.29165 3.76970 4.02979 4.07096 4.43827 4.73439 5.10501 5.22293 5.45363 5.67928 5.89176 6.20532 6.53196 6.67176 6.79738 6.81478 7.13310 7.19008 7.25848 7.70829 7.92615 8.00323 8.12878 8.29623 8.41837 9.21955 9.45127 9.87482 Molecular weight = 244.07amu Principal moments of inertia in cm(-1) A = 0.035208 B = 0.007806 C = 0.006586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.072075 B = 3586.257273 C = 4250.170886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.051 4.051 3 N -0.453 5.453 4 C 0.240 3.760 5 C -0.148 4.148 6 C 0.316 3.684 7 N -0.459 5.459 8 C 0.178 3.822 9 N -0.486 5.486 10 H 0.442 0.558 11 N -0.336 5.336 12 C 0.516 3.484 13 O -0.535 6.535 14 C 0.009 3.991 15 C -0.390 4.390 16 H 0.102 0.898 17 C 0.072 3.928 18 N -0.731 5.731 19 Si 0.917 3.083 20 H -0.256 1.256 21 H -0.271 1.271 22 H -0.270 1.270 23 H 0.045 0.955 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.199 0.801 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.465 1.116 1.489 4.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.178 4.178 3 N -0.172 5.172 4 C -0.009 4.009 5 C -0.166 4.166 6 C 0.002 3.998 7 N -0.137 5.137 8 C 0.038 3.962 9 N -0.199 5.199 10 H 0.287 0.713 11 N -0.152 5.152 12 C 0.314 3.686 13 O -0.410 6.410 14 C -0.003 4.003 15 C -0.419 4.419 16 H 0.120 0.880 17 C -0.154 4.154 18 N -0.351 5.351 19 Si 0.740 3.260 20 H -0.179 1.179 21 H -0.197 1.197 22 H -0.195 1.195 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.216 0.784 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.047 2.340 1.288 4.849 hybrid contribution 1.016 -2.254 0.129 2.476 sum 5.063 0.086 1.416 5.258 Atomic orbital electron populations 1.20032 0.89835 1.01214 1.00079 1.20523 0.95219 0.85784 1.16249 1.66429 1.02294 1.30482 1.18015 1.19990 0.86263 0.83092 1.11544 1.15263 0.90564 0.84535 1.26285 1.24173 0.92930 0.90805 0.91866 1.81171 1.07526 1.12057 1.12966 1.22502 0.97774 0.82220 0.93737 1.43578 0.99064 1.04995 1.72305 0.71309 1.47722 0.94443 1.09492 1.63513 1.20052 0.89436 0.79133 0.79986 1.90700 1.64171 1.32751 1.53328 1.19973 0.85883 0.95114 0.99299 1.19319 1.06403 0.93156 1.23029 0.88026 1.26019 0.93623 1.02291 0.93464 1.69743 1.18138 1.35255 1.11983 0.86103 0.79611 0.80496 0.79782 1.17896 1.19671 1.19468 0.93675 0.93209 0.91508 0.78390 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.09 9.67 36.01 0.35 -0.74 15 2 C -0.05 -1.22 6.89 -81.57 -0.56 -1.78 15 3 N -0.45 -10.77 10.27 -6.39 -0.07 -10.84 15 4 C 0.24 5.24 8.10 -153.76 -1.25 3.99 15 5 C -0.15 -2.53 6.16 -104.42 -0.64 -3.17 15 6 C 0.32 5.54 15.87 -22.47 -0.36 5.18 15 7 N -0.46 -8.59 18.54 41.84 0.78 -7.81 15 8 C 0.18 2.20 11.96 -16.00 -0.19 2.00 15 9 N -0.49 -7.50 7.20 31.09 0.22 -7.28 15 10 H 0.44 5.58 8.96 -182.74 -1.64 3.94 15 11 N -0.34 -7.30 3.81 -10.71 -0.04 -7.34 15 12 C 0.52 13.13 7.46 -12.32 -0.09 13.04 15 13 O -0.53 -14.50 15.04 5.14 0.08 -14.42 15 14 C 0.01 0.22 5.55 -104.34 -0.58 -0.36 15 15 C -0.39 -9.61 7.80 -38.12 -0.30 -9.90 15 16 H 0.10 2.30 7.42 -52.49 -0.39 1.91 15 17 C 0.07 1.73 4.61 -17.29 -0.08 1.65 15 18 N -0.73 -18.62 11.16 55.55 0.62 -18.00 15 19 Si 0.92 17.91 29.61 -169.99 -5.03 12.88 15 20 H -0.26 -4.81 7.11 56.52 0.40 -4.41 15 21 H -0.27 -5.11 7.11 56.52 0.40 -4.70 15 22 H -0.27 -5.40 7.11 56.52 0.40 -4.99 15 23 H 0.04 0.84 8.14 -51.93 -0.42 0.41 15 24 H 0.05 0.95 8.14 -51.93 -0.42 0.52 15 25 H 0.07 1.31 7.03 -51.93 -0.37 0.94 15 26 H 0.20 1.19 8.06 -52.49 -0.42 0.77 15 27 H 0.29 6.71 8.30 -40.82 -0.34 6.37 15 LS Contribution 257.08 15.07 3.87 3.87 Total: -1.00 -32.21 257.08 -6.06 -38.27 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -2.79 Total: 0.76 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: -3.70 Total: 9.91 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 1.51 Total: -51.27 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.08 Total: -14.42 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.21 -6.06 -38.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042747.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.867 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds