Wall clock time and date at job start Mon Mar 30 2020 03:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31952 * 120.19664 * 2 1 4 4 C 1.32450 * 122.55636 * 179.97438 * 3 2 1 5 5 C 1.47029 * 131.51213 * 180.02562 * 4 3 2 6 6 C 1.43203 * 126.64216 * 0.02562 * 5 4 3 7 7 N 5.33862 * 115.34520 * 0.04829 * 2 1 3 8 8 C 1.38206 * 106.71123 * 180.02562 * 5 4 3 9 9 N 1.35385 * 108.79235 * 0.02562 * 8 5 4 10 10 H 0.97005 * 125.09345 * 179.97438 * 9 8 5 11 11 N 1.36897 * 122.15744 * 0.11670 * 4 3 2 12 12 C 1.35145 * 120.01617 * 359.94652 * 11 4 3 13 13 O 1.21753 * 121.02164 * 179.97438 * 12 11 4 14 14 C 1.40812 * 120.19227 * 180.02562 * 2 1 3 15 15 C 1.40413 * 121.14666 * 0.02562 * 14 2 1 16 16 H 1.08001 * 120.00034 * 324.39955 * 15 14 2 17 17 C 1.39966 * 119.99920 * 144.40526 * 15 14 2 18 18 N 1.30920 * 120.00028 * 339.40157 * 17 15 14 19 19 Si 1.86801 * 120.00046 * 159.41148 * 17 15 14 20 20 H 1.48500 * 109.47018 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46949 * 119.99421 * 19 17 15 22 22 H 1.48504 * 109.46931 * 239.99318 * 19 17 15 23 23 H 1.09002 * 109.46881 * 269.94848 * 1 2 3 24 24 H 1.08999 * 109.46975 * 29.94822 * 1 2 3 25 25 H 1.08998 * 109.47220 * 149.94913 * 1 2 3 26 26 H 1.08002 * 125.59715 * 179.73532 * 8 5 4 27 27 H 0.96998 * 120.00375 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1707 1.1405 0.0000 4 6 3.4941 1.1950 0.0005 5 6 4.4224 2.3352 0.0011 6 6 4.0710 3.7234 0.0018 7 7 3.7923 4.8247 0.0041 8 6 5.6998 1.8076 0.0009 9 7 5.6136 0.4565 -0.0004 10 1 6.3702 -0.1506 -0.0012 11 7 4.2698 0.0670 -0.0013 12 6 3.6887 -1.1531 -0.0026 13 8 4.3609 -2.1683 -0.0047 14 6 2.2152 -1.2171 -0.0005 15 6 1.5417 -2.4492 -0.0016 16 1 0.6152 -2.5586 0.5424 17 6 2.0712 -3.5355 -0.7077 18 7 2.9349 -3.3323 -1.6704 19 14 1.5455 -5.2754 -0.2766 20 1 0.5675 -5.2346 0.8402 21 1 0.9170 -5.9108 -1.4625 22 1 2.7344 -6.0640 0.1357 23 1 -0.3633 -0.0009 1.0277 24 1 -0.3633 0.8904 -0.5130 25 1 -0.3633 -0.8895 -0.5146 26 1 6.6161 2.3793 -0.0029 27 1 3.3016 -4.0851 -2.1600 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261042747.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:52 Heat of formation + Delta-G solvation = 78.053218 kcal Electronic energy + Delta-G solvation = -16822.045566 eV Core-core repulsion = 13967.688380 eV Total energy + Delta-G solvation = -2854.357186 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.070 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.75019 -39.44918 -37.91512 -37.24724 -35.55922 -33.32998 -32.77008 -30.92279 -29.16010 -26.92549 -24.22461 -23.76577 -23.06870 -19.86971 -19.76597 -18.16709 -17.63539 -17.24041 -17.11686 -16.68520 -15.92470 -15.13472 -14.77973 -14.69462 -14.26665 -13.89488 -13.86169 -13.81492 -13.41247 -13.15542 -13.02507 -12.83530 -12.55215 -12.48664 -12.05275 -11.24514 -10.81534 -10.72730 -10.32741 -9.76152 -8.88233 -8.42013 -6.12632 0.17848 0.46173 0.55003 1.37855 1.43666 1.49878 1.54388 1.81837 2.18336 2.52528 2.64437 2.80415 3.37373 3.44344 3.74451 3.92755 4.34111 4.42375 4.61055 4.88467 5.06455 5.12285 5.16296 5.44796 5.51083 5.70293 6.01125 6.22258 6.44924 6.55707 6.71025 6.79237 7.38371 7.65984 8.22908 Molecular weight = 244.07amu Principal moments of inertia in cm(-1) A = 0.035208 B = 0.007806 C = 0.006586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.072075 B = 3586.257273 C = 4250.170886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.046 4.046 3 N -0.496 5.496 4 C 0.263 3.737 5 C -0.199 4.199 6 C 0.334 3.666 7 N -0.486 5.486 8 C 0.262 3.738 9 N -0.468 5.468 10 H 0.460 0.540 11 N -0.351 5.351 12 C 0.500 3.500 13 O -0.562 6.562 14 C -0.037 4.037 15 C -0.433 4.433 16 H 0.105 0.895 17 C 0.034 3.966 18 N -0.784 5.784 19 Si 0.982 3.018 20 H -0.246 1.246 21 H -0.260 1.260 22 H -0.279 1.279 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.284 0.716 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.534 2.526 1.983 7.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.172 4.172 3 N -0.217 5.217 4 C 0.011 3.989 5 C -0.217 4.217 6 C 0.022 3.978 7 N -0.165 5.165 8 C 0.119 3.881 9 N -0.183 5.183 10 H 0.309 0.691 11 N -0.163 5.163 12 C 0.300 3.700 13 O -0.440 6.440 14 C -0.047 4.047 15 C -0.463 4.463 16 H 0.123 0.877 17 C -0.186 4.186 18 N -0.407 5.407 19 Si 0.802 3.198 20 H -0.169 1.169 21 H -0.185 1.185 22 H -0.204 1.204 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.299 0.701 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.092 3.729 1.787 7.363 hybrid contribution 0.679 -2.279 0.010 2.378 sum 6.771 1.451 1.797 7.154 Atomic orbital electron populations 1.20068 0.87952 1.01609 1.01188 1.21108 0.96855 0.85706 1.13529 1.66562 1.03553 1.30311 1.21284 1.21047 0.86556 0.84717 1.06543 1.15233 0.91071 0.83376 1.32001 1.24013 0.92400 0.90517 0.90914 1.81205 1.07835 1.12917 1.14583 1.23901 0.98781 0.80156 0.85216 1.44022 0.96954 1.06873 1.70428 0.69145 1.47628 0.97663 1.08901 1.62130 1.20102 0.89854 0.79649 0.80394 1.90649 1.64813 1.33768 1.54741 1.20244 0.86614 0.96046 1.01822 1.19411 1.07601 0.93932 1.25318 0.87688 1.26802 0.93330 1.05744 0.92694 1.69808 1.21054 1.35949 1.13902 0.85152 0.78887 0.75729 0.80014 1.16871 1.18452 1.20426 0.92068 0.92341 0.91404 0.70084 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.08 9.67 71.24 0.69 -1.39 15 2 C -0.05 -2.28 6.89 43.17 0.30 -1.98 15 3 N -0.50 -23.59 10.27 -174.12 -1.79 -25.38 15 4 C 0.26 11.06 8.10 135.84 1.10 12.16 15 5 C -0.20 -6.00 6.16 -19.73 -0.12 -6.12 15 6 C 0.33 10.66 15.87 88.33 1.40 12.07 15 7 N -0.49 -17.07 18.54 19.01 0.35 -16.71 15 8 C 0.26 4.68 11.96 84.14 1.01 5.68 15 9 N -0.47 -12.30 7.20 -55.56 -0.40 -12.70 15 10 H 0.46 9.37 8.96 -213.44 -1.91 7.46 15 11 N -0.35 -14.71 3.81 -305.78 -1.16 -15.87 15 12 C 0.50 25.91 7.46 86.62 0.65 26.56 15 13 O -0.56 -31.23 15.04 -4.52 -0.07 -31.30 15 14 C -0.04 -1.93 5.55 -19.68 -0.11 -2.04 15 15 C -0.43 -22.35 7.80 23.22 0.18 -22.17 15 16 H 0.11 5.01 7.42 -2.91 -0.02 4.99 15 17 C 0.03 1.73 4.61 85.25 0.39 2.12 15 18 N -0.78 -41.95 11.16 21.84 0.24 -41.71 15 19 Si 0.98 38.14 29.61 68.60 2.03 40.17 15 20 H -0.25 -8.97 7.11 99.48 0.71 -8.26 15 21 H -0.26 -9.44 7.11 99.48 0.71 -8.73 15 22 H -0.28 -11.05 7.11 99.48 0.71 -10.35 15 23 H 0.06 2.28 8.14 -2.39 -0.02 2.26 15 24 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 25 H 0.07 2.74 7.03 -2.39 -0.02 2.73 15 26 H 0.28 0.43 8.06 -2.91 -0.02 0.41 15 27 H 0.29 14.14 8.30 -92.71 -0.77 13.37 15 Total: -1.00 -76.55 257.08 4.03 -72.52 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -0.66 Total: 6.10 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: 5.48 Total: 24.88 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -2.76 Total: -112.37 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.07 Total: -31.30 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -76.55 4.03 -72.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042747.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.568 kcal (2) G-P(sol) polarization free energy of solvation -76.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds