Wall clock time and date at job start Mon Mar 30 2020 03:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46493 * 119.99959 * 2 1 4 4 C 1.50698 * 109.47475 * 270.00011 * 3 2 1 5 5 H 1.08002 * 119.99844 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00236 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00039 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00146 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47075 * 60.00036 * 8 6 4 10 10 H 1.48496 * 109.47304 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47292 * 300.00328 * 8 6 4 12 12 C 1.34782 * 119.99960 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99612 * 179.97438 * 12 2 1 14 14 C 1.50699 * 119.99981 * 0.02562 * 12 2 1 15 15 H 1.09005 * 109.01326 * 317.48667 * 14 12 2 16 16 C 1.53425 * 108.94791 * 76.37982 * 14 12 2 17 17 S 1.82071 * 103.93500 * 120.53273 * 16 14 12 18 18 C 1.76707 * 95.97641 * 359.82963 * 17 16 14 19 19 O 1.21619 * 125.19678 * 180.21899 * 18 17 16 20 20 N 1.33002 * 109.59892 * 0.31741 * 18 17 16 21 21 H 1.09004 * 109.46766 * 269.99357 * 1 2 3 22 22 H 1.08994 * 109.47014 * 29.99519 * 1 2 3 23 23 H 1.09002 * 109.47037 * 149.99990 * 1 2 3 24 24 H 1.09007 * 109.47080 * 30.00743 * 3 2 1 25 25 H 1.09003 * 109.47340 * 150.00307 * 3 2 1 26 26 H 0.97005 * 120.00245 * 180.02562 * 7 6 4 27 27 H 1.09008 * 110.53496 * 239.14341 * 16 14 12 28 28 H 1.08998 * 110.53767 * 1.91844 * 16 14 12 29 29 H 0.97001 * 120.61718 * 179.90165 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4367 3.4177 -3.4338 9 1 2.1390 3.5949 -4.1335 10 1 4.1782 4.7042 -3.4338 11 1 4.2394 2.3832 -4.1343 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0017 15 1 0.5497 -2.4005 0.6945 16 6 0.8409 -2.7320 -1.4124 17 16 1.6013 -4.3154 -1.8913 18 6 2.5070 -4.5457 -0.3915 19 8 3.2332 -5.4907 -0.1492 20 7 2.2713 -3.5287 0.4326 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3633 0.8900 -0.5137 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6084 2.0283 0.5140 25 1 3.1499 1.1384 0.5138 26 1 4.0295 4.4444 -0.8503 27 1 -0.2454 -2.8199 -1.3928 28 1 1.1490 -1.9385 -2.0932 29 1 2.6895 -3.4944 1.3071 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265832109.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:44 Heat of formation + Delta-G solvation = -57.698338 kcal Electronic energy + Delta-G solvation = -15739.897489 eV Core-core repulsion = 12982.804873 eV Total energy + Delta-G solvation = -2757.092615 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 244.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.40856 -38.77713 -36.19983 -35.11912 -32.78558 -30.80708 -27.97715 -26.44654 -25.32833 -23.20443 -22.11313 -19.38275 -17.93134 -17.46417 -17.13944 -16.63269 -15.60383 -15.22935 -14.80685 -14.59262 -14.19576 -14.13277 -13.60896 -13.17758 -12.69186 -12.38205 -12.27687 -12.04213 -11.32721 -11.20300 -10.99260 -10.68410 -10.28970 -10.05854 -10.01552 -9.79666 -9.04304 -8.54151 -8.34485 -7.91813 -6.15758 -4.21722 1.07009 1.68827 2.14781 2.86999 3.08724 3.25436 3.30926 3.33973 3.64717 4.09415 4.33919 4.50313 4.72727 5.04794 5.19369 5.27995 5.36904 5.67997 5.99514 6.28568 6.56124 6.82054 7.22841 7.30279 7.60003 7.78499 8.06798 8.09482 8.62929 8.83193 9.44081 10.92381 Molecular weight = 244.07amu Principal moments of inertia in cm(-1) A = 0.031908 B = 0.006433 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.301495 B = 4351.432913 C = 4532.377060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.593 5.593 3 C 0.245 3.755 4 C -0.532 4.532 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.490 3.510 13 O -0.519 6.519 14 C 0.110 3.890 15 H 0.118 0.882 16 C -0.092 4.092 17 S -0.166 6.166 18 C 0.554 3.446 19 O -0.490 6.490 20 N -0.696 5.696 21 H 0.050 0.950 22 H 0.081 0.919 23 H 0.057 0.943 24 H 0.036 0.964 25 H 0.045 0.955 26 H 0.265 0.735 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.718 -9.520 1.481 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.325 5.325 3 C 0.127 3.873 4 C -0.571 4.571 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.272 3.728 13 O -0.395 6.395 14 C -0.001 4.001 15 H 0.136 0.864 16 C -0.241 4.241 17 S 0.056 5.944 18 C 0.231 3.769 19 O -0.368 6.368 20 N -0.353 5.353 21 H 0.069 0.931 22 H 0.100 0.900 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -9.733 -10.496 0.510 14.323 hybrid contribution 0.359 1.297 0.410 1.407 sum -9.374 -9.199 0.920 13.166 Atomic orbital electron populations 1.21811 0.81094 1.03064 1.00981 1.48185 1.06384 1.07487 1.70491 1.19375 0.92583 0.77536 0.97830 1.21330 1.37231 1.06530 0.92005 0.92427 1.24928 0.95129 0.96307 0.97568 1.69910 1.37977 1.14333 1.30922 0.86543 0.78458 0.77950 0.84425 1.20146 1.21108 1.20070 1.20335 0.88407 0.84793 0.79249 1.90754 1.13271 1.86490 1.48948 1.21030 0.93820 0.87977 0.97320 0.86419 1.24241 1.04683 0.98349 0.96792 1.87325 1.56329 1.26438 1.24311 1.21601 0.83765 0.84134 0.87442 1.90891 1.38806 1.32188 1.74909 1.45459 1.48741 1.20627 1.20492 0.93142 0.90007 0.92393 0.94569 0.93743 0.92495 0.85439 0.85572 0.74187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 9.90 59.85 0.59 1.51 15 2 N -0.59 -10.80 2.86 -182.96 -0.52 -11.32 15 3 C 0.25 5.90 5.16 -5.20 -0.03 5.88 15 4 C -0.53 -14.15 9.39 -34.44 -0.32 -14.47 15 5 H 0.06 1.51 7.81 -52.49 -0.41 1.10 15 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 7 N -0.89 -25.55 13.29 55.43 0.74 -24.82 15 8 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 15 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 12 C 0.49 8.83 6.62 -10.98 -0.07 8.76 15 13 O -0.52 -12.12 16.09 5.56 0.09 -12.04 15 14 C 0.11 1.36 3.05 -69.91 -0.21 1.15 15 15 H 0.12 1.01 7.33 -51.93 -0.38 0.63 15 16 C -0.09 -1.00 5.63 37.38 0.21 -0.79 15 17 S -0.17 -2.25 23.25 -107.50 -2.50 -4.75 15 18 C 0.55 8.75 8.77 53.27 0.47 9.21 15 19 O -0.49 -9.18 18.05 5.26 0.09 -9.09 15 20 N -0.70 -9.58 4.73 -59.62 -0.28 -9.86 15 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 15 22 H 0.08 1.07 8.07 -51.93 -0.42 0.65 15 23 H 0.06 0.51 5.24 -51.93 -0.27 0.23 15 24 H 0.04 0.88 8.07 -51.93 -0.42 0.46 15 25 H 0.04 1.23 7.42 -51.93 -0.39 0.84 15 26 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 27 H 0.13 0.87 7.77 -51.92 -0.40 0.46 15 28 H 0.13 1.58 7.64 -51.93 -0.40 1.18 15 29 H 0.42 5.35 8.94 -40.82 -0.37 4.99 15 LS Contribution 267.86 15.07 4.04 4.04 Total: -1.00 -33.75 267.86 -5.84 -39.59 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -3.01 Total: -0.68 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 0.54 Total: 12.88 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.07 Total: -46.00 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: 0.18 Total: -21.12 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -2.25 SS G_CDS: -2.50 Total: -4.75 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.75 -5.84 -39.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265832109.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.107 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds