Wall clock time and date at job start Mon Mar 30 2020 03:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99938 * 2 1 4 4 H 1.48502 * 109.47165 * 270.00017 * 3 2 1 5 5 H 1.48501 * 109.47314 * 29.99940 * 3 2 1 6 6 H 1.48493 * 109.47138 * 150.00235 * 3 2 1 7 7 C 1.37875 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99630 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00281 * 180.02562 * 7 2 1 10 10 O 1.42899 * 109.47163 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99778 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47079 * 180.02562 * 11 10 9 13 13 S 1.81000 * 109.46989 * 179.97438 * 12 11 10 14 14 C 1.76205 * 99.99610 * 179.97438 * 13 12 11 15 15 N 1.31687 * 126.02469 * 0.02562 * 14 13 12 16 16 C 1.33722 * 109.64750 * 179.97438 * 15 14 13 17 17 N 1.39570 * 125.51380 * 179.97438 * 16 15 14 18 18 N 1.31105 * 108.97780 * 359.97438 * 16 15 14 19 19 N 1.35010 * 126.01851 * 179.71275 * 14 13 12 20 20 H 0.97005 * 126.77184 * 359.97438 * 19 14 13 21 21 H 0.97001 * 119.99741 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.46854 * 59.99681 * 9 7 2 23 23 H 1.08997 * 109.47005 * 299.99947 * 9 7 2 24 24 H 1.09004 * 109.47054 * 299.99711 * 11 10 9 25 25 H 1.09000 * 109.47187 * 59.99767 * 11 10 9 26 26 H 1.09004 * 109.46930 * 299.99773 * 12 11 10 27 27 H 1.09004 * 109.47059 * 59.99375 * 12 11 10 28 28 H 0.96997 * 119.99929 * 359.97438 * 17 16 15 29 29 H 0.97006 * 120.00104 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 8 3.9879 -2.5413 -0.0001 11 6 5.4124 -2.6541 0.0010 12 6 5.8070 -4.1324 0.0002 13 16 7.6113 -4.2753 0.0008 14 6 7.7793 -6.0293 0.0004 15 7 6.7929 -6.9018 -0.0007 16 6 7.2905 -8.1429 -0.0012 17 7 6.5378 -9.3182 -0.0018 18 7 8.5999 -8.0773 -0.0010 19 7 8.9420 -6.7155 -0.0048 20 1 9.8370 -6.3415 -0.0094 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6808 0.8905 23 1 3.8752 -0.6796 -0.8894 24 1 5.8159 -2.1703 -0.8885 25 1 5.8145 -2.1709 0.8915 26 1 5.4035 -4.6167 0.8895 27 1 5.4049 -4.6153 -0.8905 28 1 5.5688 -9.2736 -0.0015 29 1 6.9836 -10.1798 -0.0018 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338515194.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:55 Heat of formation + Delta-G solvation = 19.661929 kcal Electronic energy + Delta-G solvation = -14425.582190 eV Core-core repulsion = 11704.136919 eV Total energy + Delta-G solvation = -2721.445271 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 244.073 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.91410 -38.80569 -35.77558 -34.94669 -33.27719 -32.49005 -31.06593 -29.76262 -25.00942 -24.02274 -23.50627 -22.38628 -19.86099 -19.03617 -18.22375 -17.66251 -17.16109 -16.95136 -16.73089 -16.47688 -16.28566 -15.11732 -14.90095 -14.73082 -14.47331 -13.20914 -13.15471 -12.99829 -12.69155 -12.52281 -12.41053 -11.93318 -11.79040 -11.38595 -11.36096 -11.17753 -10.91803 -10.41704 -9.64327 -8.84195 -8.35687 -6.44478 -0.21957 0.39635 0.73526 1.36646 1.39960 1.50626 1.69439 1.90229 2.31604 2.73603 2.97024 3.13306 3.58242 3.87032 3.94940 4.36134 4.56228 4.65936 4.76373 4.87439 5.01000 5.09584 5.43228 5.87254 5.91198 6.32265 6.40569 6.59050 6.69637 7.19588 7.28306 8.81279 Molecular weight = 244.07amu Principal moments of inertia in cm(-1) A = 0.048564 B = 0.003876 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.422193 B = 7222.966866 C = 7773.639867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.240 1.240 7 C -0.549 4.549 8 H 0.029 0.971 9 C 0.179 3.821 10 O -0.403 6.403 11 C 0.066 3.934 12 C -0.102 4.102 13 S 0.077 5.923 14 C 0.275 3.725 15 N -0.594 5.594 16 C 0.470 3.530 17 N -0.810 5.810 18 N -0.382 5.382 19 N -0.453 5.453 20 H 0.458 0.542 21 H 0.273 0.727 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.422 0.578 29 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.787 -10.495 -0.001 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.163 1.163 7 C -0.587 4.587 8 H 0.047 0.953 9 C 0.103 3.897 10 O -0.323 6.323 11 C -0.012 4.012 12 C -0.251 4.251 13 S 0.304 5.696 14 C -0.112 4.112 15 N -0.334 5.334 16 C 0.096 3.904 17 N -0.369 5.369 18 N -0.224 5.224 19 N -0.177 5.177 20 H 0.307 0.693 21 H 0.082 0.918 22 H 0.037 0.963 23 H 0.036 0.964 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.254 0.746 29 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 21.436 -10.241 0.001 23.757 hybrid contribution -0.871 -0.355 -0.015 0.941 sum 20.565 -10.596 -0.013 23.134 Atomic orbital electron populations 1.70040 1.08363 1.28820 1.50934 1.25890 0.95846 1.03589 0.93413 0.85582 0.79575 0.77184 0.79850 1.18336 1.20063 1.16332 1.21169 0.91049 0.93861 1.52581 0.95258 1.20395 0.93193 0.80360 0.95754 1.87875 1.20079 1.28966 1.95409 1.22182 0.82934 0.93856 1.02271 1.23340 0.93724 1.00032 1.08014 1.85253 1.06741 0.86197 1.91459 1.26303 0.85306 1.01020 0.98575 1.70773 1.31452 0.98864 1.32337 1.20836 0.87468 0.88108 0.93949 1.41019 1.08609 1.01854 1.85438 1.77990 1.12116 0.93900 1.38422 1.47355 1.08745 1.02455 1.59176 0.69255 0.91806 0.96284 0.96361 0.91274 0.91341 0.88464 0.88452 0.74595 0.74324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.86 13.96 21.45 0.30 -58.56 15 2 C 0.01 0.62 5.47 84.65 0.46 1.08 15 3 Si 0.96 42.11 27.47 68.60 1.88 43.99 15 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 15 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 15 6 H -0.24 -9.52 6.54 99.48 0.65 -8.87 15 7 C -0.55 -32.96 9.99 25.60 0.26 -32.71 15 8 H 0.03 1.99 8.06 -2.91 -0.02 1.97 15 9 C 0.18 8.62 4.76 71.24 0.34 8.96 15 10 O -0.40 -17.99 10.33 -148.98 -1.54 -19.53 15 11 C 0.07 2.03 5.94 71.98 0.43 2.46 15 12 C -0.10 -2.75 5.58 71.98 0.40 -2.35 15 13 S 0.08 1.53 22.31 -56.49 -1.26 0.27 15 14 C 0.27 6.49 8.31 179.92 1.49 7.99 15 15 N -0.59 -16.55 10.59 -197.75 -2.09 -18.64 15 16 C 0.47 11.92 9.42 260.94 2.46 14.38 15 17 N -0.81 -14.07 9.13 -59.04 -0.54 -14.61 15 18 N -0.38 -9.42 12.80 -59.07 -0.76 -10.18 15 19 N -0.45 -9.25 7.46 -57.59 -0.43 -9.68 15 20 H 0.46 5.88 8.96 -213.11 -1.91 3.97 15 21 H 0.27 15.62 8.31 -92.71 -0.77 14.85 15 22 H 0.02 0.88 7.20 -2.39 -0.02 0.86 15 23 H 0.02 0.83 7.57 -2.39 -0.02 0.81 15 24 H 0.07 1.88 8.14 -2.38 -0.02 1.86 15 25 H 0.07 1.87 8.14 -2.39 -0.02 1.85 15 26 H 0.10 2.83 8.14 -2.39 -0.02 2.81 15 27 H 0.10 2.83 8.14 -2.39 -0.02 2.81 15 28 H 0.42 6.31 8.96 -92.71 -0.83 5.48 15 29 H 0.42 5.19 8.96 -92.70 -0.83 4.36 15 Total: -1.00 -74.47 274.85 -1.01 -75.47 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -2.41 Total: 11.65 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.84 Total: -0.19 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -3.52 Total: -111.67 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -1.54 Total: -19.53 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.88 Total: 43.99 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.26 Total: 0.27 kcal Total: -74.47 -1.01 -75.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338515194.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.136 kcal (2) G-P(sol) polarization free energy of solvation -74.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds