Wall clock time and date at job start Mon Mar 30 2020 03:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30991 * 1 3 3 Si 1.86805 * 120.00328 * 2 1 4 4 H 1.48495 * 109.47268 * 239.99926 * 3 2 1 5 5 H 1.48496 * 109.46905 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46916 * 119.99687 * 3 2 1 7 7 C 1.39790 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00601 * 195.63823 * 7 2 1 9 9 C 1.40858 * 119.99442 * 15.63841 * 7 2 1 10 10 C 1.40844 * 120.19873 * 25.83039 * 9 7 2 11 11 C 1.36495 * 119.99470 * 179.97438 * 10 9 7 12 12 O 1.36011 * 119.80708 * 180.02562 * 11 10 9 13 13 C 1.42906 * 116.99554 * 0.02562 * 12 11 10 14 14 F 1.39890 * 109.46876 * 299.99835 * 13 12 11 15 15 F 1.39899 * 109.47166 * 59.99892 * 13 12 11 16 16 C 1.40300 * 120.39300 * 359.71829 * 11 10 9 17 17 N 1.39076 * 119.80610 * 180.27943 * 16 11 10 18 18 C 1.38947 * 120.39228 * 0.55858 * 16 11 10 19 19 C 1.38399 * 120.00148 * 359.44621 * 18 16 11 20 20 N 1.38921 * 120.19698 * 180.29639 * 19 18 16 21 21 H 0.96998 * 119.99387 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.00308 * 359.95062 * 10 9 7 23 23 H 1.09001 * 109.46520 * 179.97438 * 13 12 11 24 24 H 0.97000 * 120.00001 * 180.27854 * 17 16 11 25 25 H 0.97005 * 119.99560 * 0.27002 * 17 16 11 26 26 H 1.07995 * 120.00145 * 179.71927 * 18 16 11 27 27 H 0.96999 * 120.00003 * 0.02562 * 20 19 18 28 28 H 0.97002 * 119.99843 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2440 1.6177 0.0000 4 1 3.0978 1.6964 -1.2124 5 1 1.2791 2.7464 -0.0006 6 1 3.0977 1.6963 1.2126 7 6 2.0089 -1.2106 0.0005 8 1 3.0588 -1.2279 0.2526 9 6 1.3436 -2.4080 -0.3278 10 6 0.2016 -2.3810 -1.1516 11 6 -0.4396 -3.5438 -1.4675 12 8 -1.5418 -3.5134 -2.2638 13 6 -1.9690 -2.2324 -2.7314 14 9 -2.2724 -1.4143 -1.6380 15 9 -0.9457 -1.6453 -3.4833 16 6 0.0354 -4.7711 -0.9810 17 7 -0.6239 -5.9491 -1.3153 18 6 1.1573 -4.8160 -0.1624 19 6 1.8199 -3.6468 0.1683 20 7 2.9456 -3.6877 0.9814 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1671 -1.4402 -1.5330 23 1 -2.8555 -2.3503 -3.3546 24 1 -0.3003 -6.7987 -0.9773 25 1 -1.4074 -5.9210 -1.8866 26 1 1.5148 -5.7637 0.2122 27 1 3.2695 -4.5374 1.3188 28 1 3.4076 -2.8664 1.2116 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575723019.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:09 Heat of formation + Delta-G solvation = -121.799992 kcal Electronic energy + Delta-G solvation = -18136.897262 eV Core-core repulsion = 14823.184604 eV Total energy + Delta-G solvation = -3313.712658 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.33337 -46.33410 -38.64514 -36.58694 -34.32376 -33.21370 -31.27612 -28.33128 -27.30057 -25.23455 -23.84470 -21.31942 -20.25441 -18.09614 -17.40799 -16.89383 -16.52943 -16.14624 -15.73744 -14.84317 -14.69084 -14.36642 -13.47001 -13.30266 -12.90752 -12.71782 -12.63662 -12.36871 -11.91887 -11.75895 -11.55046 -11.47775 -11.05966 -10.90572 -10.41840 -10.03595 -9.79823 -9.54367 -8.96979 -8.08859 -6.69058 -6.50215 -5.98590 -3.85323 2.97777 3.15152 3.19829 3.21915 3.37082 3.63864 4.12779 4.39289 4.81533 4.99073 5.18786 5.36337 5.52811 5.83547 6.29463 6.79620 6.86762 7.09338 7.27948 7.34662 7.52258 7.92248 8.02011 8.20995 8.49278 8.73803 8.85041 8.91349 8.98608 9.18448 9.26374 10.51200 Molecular weight = 244.08amu Principal moments of inertia in cm(-1) A = 0.019595 B = 0.012230 C = 0.008063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.606878 B = 2288.942895 C = 3471.929087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.073 3.927 3 Si 0.900 3.100 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.465 4.465 8 H 0.068 0.932 9 C 0.047 3.953 10 C -0.163 4.163 11 C -0.006 4.006 12 O -0.341 6.341 13 C 0.414 3.586 14 F -0.190 7.190 15 F -0.207 7.207 16 C 0.140 3.860 17 N -0.890 5.890 18 C -0.229 4.229 19 C 0.144 3.856 20 N -0.881 5.881 21 H 0.275 0.725 22 H 0.145 0.855 23 H 0.155 0.845 24 H 0.381 0.619 25 H 0.387 0.613 26 H 0.096 0.904 27 H 0.376 0.624 28 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.326 -4.280 -3.175 5.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.497 4.497 8 H 0.087 0.913 9 C 0.041 3.959 10 C -0.185 4.185 11 C -0.052 4.052 12 O -0.260 6.260 13 C 0.323 3.677 14 F -0.171 7.171 15 F -0.189 7.189 16 C 0.039 3.961 17 N -0.434 5.434 18 C -0.257 4.257 19 C 0.041 3.959 20 N -0.422 5.422 21 H 0.086 0.914 22 H 0.162 0.838 23 H 0.171 0.829 24 H 0.207 0.793 25 H 0.214 0.786 26 H 0.114 0.886 27 H 0.202 0.798 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.626 -4.114 -3.226 5.850 hybrid contribution 0.566 0.800 0.250 1.011 sum -2.060 -3.315 -2.976 4.908 Atomic orbital electron populations 1.69867 1.06886 1.28368 1.37682 1.25697 0.94726 1.00457 0.93350 0.86515 0.80057 0.81426 0.79419 1.19324 1.20682 1.19535 1.18883 0.96464 0.90996 1.43379 0.91346 1.16853 0.94185 0.90509 0.94317 1.21184 0.99793 0.95820 1.01704 1.17805 0.91088 0.94070 1.02238 1.86254 1.45871 1.28432 1.65488 1.22843 0.87655 0.76558 0.80677 1.93149 1.93001 1.73941 1.57051 1.93051 1.64150 1.85121 1.76623 1.16280 0.95068 0.83499 1.01265 1.41706 1.35354 1.05329 1.60976 1.19244 1.00578 0.95887 1.09954 1.17721 0.90097 0.93470 0.94600 1.41901 1.32169 1.09554 1.58568 0.91428 0.83826 0.82861 0.79305 0.78636 0.88561 0.79828 0.77848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.72 10.90 55.54 0.61 -21.11 15 2 C 0.07 1.90 5.17 -17.33 -0.09 1.81 15 3 Si 0.90 19.64 29.59 -169.99 -5.03 14.62 15 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 7 C -0.47 -12.49 8.48 -38.01 -0.32 -12.81 15 8 H 0.07 1.73 6.68 -52.49 -0.35 1.38 15 9 C 0.05 1.28 5.58 -106.60 -0.60 0.68 15 10 C -0.16 -4.39 6.82 -39.23 -0.27 -4.66 15 11 C -0.01 -0.15 6.48 -39.44 -0.26 -0.40 15 12 O -0.34 -7.24 9.64 -19.78 -0.19 -7.43 15 13 C 0.41 7.74 5.98 101.05 0.60 8.34 15 14 F -0.19 -4.14 15.57 2.25 0.04 -4.10 15 15 F -0.21 -4.33 15.57 2.25 0.04 -4.29 15 16 C 0.14 3.16 6.78 -83.54 -0.57 2.60 15 17 N -0.89 -16.03 9.04 32.57 0.29 -15.73 15 18 C -0.23 -5.15 9.70 -39.26 -0.38 -5.53 15 19 C 0.14 3.47 6.78 -83.27 -0.56 2.90 15 20 N -0.88 -17.61 8.98 32.72 0.29 -17.32 15 21 H 0.27 6.99 8.30 -40.82 -0.34 6.65 15 22 H 0.14 3.98 3.09 -52.48 -0.16 3.82 15 23 H 0.15 1.89 8.14 -51.93 -0.42 1.47 15 24 H 0.38 5.80 8.83 -40.82 -0.36 5.44 15 25 H 0.39 6.48 8.15 -40.82 -0.33 6.15 15 26 H 0.10 1.89 8.06 -52.49 -0.42 1.47 15 27 H 0.38 6.26 8.83 -40.82 -0.36 5.90 15 28 H 0.39 7.74 7.05 -40.82 -0.29 7.45 15 LS Contribution 249.51 15.07 3.76 3.76 Total: -1.00 -30.96 249.51 -4.47 -35.42 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: -1.83 Total: 23.25 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -2.44 Total: -7.06 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 1.19 Total: -54.16 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.19 Total: -7.43 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 0.07 Total: -8.40 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.96 -4.47 -35.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575723019.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.376 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds