Wall clock time and date at job start Mon Mar 30 2020 03:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86798 * 119.99888 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99647 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99828 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99821 * 3 2 1 7 7 C 1.38802 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99553 * 0.02562 * 7 2 1 9 9 S 1.76195 * 120.00153 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00017 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46942 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00135 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99721 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99849 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.43843 * 323.91085 * 14 13 11 16 16 C 1.54633 * 110.48793 * 201.23235 * 14 13 11 17 17 C 1.54479 * 101.76483 * 216.52753 * 16 14 13 18 18 N 1.46759 * 105.47400 * 25.41044 * 17 16 14 19 19 C 1.34418 * 111.30126 * 342.98652 * 18 17 16 20 20 O 1.21286 * 124.93882 * 180.37099 * 19 18 17 21 21 H 0.97006 * 119.99745 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47260 * 300.00006 * 10 9 7 23 23 H 1.09000 * 109.46919 * 60.00544 * 10 9 7 24 24 H 0.97000 * 120.00186 * 0.02562 * 13 11 10 25 25 H 1.09004 * 110.96288 * 334.64131 * 16 14 13 26 26 H 1.08997 * 110.97378 * 98.40289 * 16 14 13 27 27 H 1.09005 * 110.24258 * 266.41140 * 17 16 14 28 28 H 1.08998 * 110.32213 * 144.45289 * 17 16 14 29 29 H 0.97005 * 124.34854 * 163.00711 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 3.5478 1.4402 0.7001 6 1 1.4477 2.6527 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5731 -3.2325 0.0002 12 8 6.3441 -2.2963 0.0006 13 7 6.0457 -4.4947 -0.0001 14 6 7.4907 -4.7357 -0.0005 15 1 8.0018 -3.9842 -0.6022 16 6 7.8022 -6.1565 -0.5254 17 6 9.0004 -6.5639 0.3604 18 7 8.8655 -5.7731 1.5894 19 6 8.0278 -4.7367 1.4137 20 8 7.7433 -3.9213 2.2653 21 1 -0.4850 0.8401 -0.0004 22 1 3.6440 -3.4314 0.8904 23 1 3.6434 -3.4318 -0.8896 24 1 5.4291 -5.2435 -0.0007 25 1 6.9556 -6.8248 -0.3678 26 1 8.0860 -6.1303 -1.5775 27 1 9.9385 -6.3249 -0.1408 28 1 8.9567 -7.6284 0.5902 29 1 9.3225 -5.9725 2.4215 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699142017.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:39 Heat of formation + Delta-G solvation = -103.055583 kcal Electronic energy + Delta-G solvation = -15084.911993 eV Core-core repulsion = 12325.852540 eV Total energy + Delta-G solvation = -2759.059453 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 244.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.72045 -40.06702 -37.52875 -35.47804 -34.67705 -31.97935 -30.26737 -27.96335 -27.60843 -23.02014 -22.39145 -21.24913 -19.92639 -18.50003 -18.12922 -17.40971 -17.23128 -17.06317 -16.28972 -15.90859 -15.31762 -14.91844 -14.77806 -14.73455 -14.51221 -13.66304 -13.50214 -13.35789 -13.05887 -13.01716 -12.61438 -12.09329 -11.87815 -11.56946 -11.17591 -11.06463 -10.54198 -10.09192 -10.07212 -9.00713 -8.52378 -6.22997 0.95149 1.29924 1.31759 1.48269 1.54393 1.60083 2.16914 2.25012 2.48141 2.72100 2.85710 3.40370 3.44829 3.84834 4.03449 4.09875 4.22535 4.43775 4.53604 4.80661 4.99947 5.06790 5.31621 5.70261 5.84343 5.97666 6.10515 6.38687 6.92987 7.14413 7.22659 8.59918 Molecular weight = 244.07amu Principal moments of inertia in cm(-1) A = 0.057561 B = 0.004919 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.319913 B = 5691.227120 C = 5883.223876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.259 1.259 5 H -0.242 1.242 6 H -0.258 1.258 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.180 6.180 10 C -0.109 4.109 11 C 0.535 3.465 12 O -0.554 6.554 13 N -0.698 5.698 14 C 0.108 3.892 15 H 0.110 0.890 16 C -0.122 4.122 17 C 0.100 3.900 18 N -0.721 5.721 19 C 0.488 3.512 20 O -0.578 6.578 21 H 0.277 0.723 22 H 0.108 0.892 23 H 0.123 0.877 24 H 0.422 0.578 25 H 0.110 0.890 26 H 0.128 0.872 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.399 -19.288 -2.915 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.184 1.184 5 H -0.166 1.166 6 H -0.182 1.182 7 C -0.675 4.675 8 H 0.083 0.917 9 S 0.046 5.954 10 C -0.259 4.259 11 C 0.321 3.679 12 O -0.431 6.431 13 N -0.353 5.353 14 C -0.001 4.001 15 H 0.128 0.872 16 C -0.160 4.160 17 C -0.023 4.023 18 N -0.377 5.377 19 C 0.272 3.728 20 O -0.457 6.457 21 H 0.087 0.913 22 H 0.127 0.873 23 H 0.141 0.859 24 H 0.261 0.739 25 H 0.129 0.871 26 H 0.146 0.854 27 H 0.114 0.886 28 H 0.136 0.864 29 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 19.302 -17.227 -2.593 26.001 hybrid contribution -1.245 -0.442 0.637 1.467 sum 18.057 -17.669 -1.956 25.339 Atomic orbital electron populations 1.70013 1.07175 1.29005 1.49159 1.25543 0.95296 1.02183 0.92930 0.85881 0.80534 0.79727 0.80320 1.18355 1.16597 1.18242 1.22447 0.90040 0.96787 1.58206 0.91736 1.84807 1.06685 1.06312 1.97586 1.23245 0.95484 0.99637 1.07575 1.20064 0.89610 0.83482 0.74749 1.90698 1.59327 1.43857 1.49208 1.45471 1.06864 1.07210 1.75804 1.21784 0.82196 1.02402 0.93707 0.87229 1.23045 0.99910 0.90532 1.02529 1.22426 0.99170 0.97581 0.83115 1.46242 1.46533 1.28618 1.16266 1.21859 0.79323 0.80529 0.91048 1.90785 1.62074 1.42383 1.50418 0.91337 0.87337 0.85874 0.73909 0.87137 0.85412 0.88623 0.86439 0.74376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.59 13.97 21.65 0.30 -56.28 15 2 C 0.05 2.76 5.50 84.86 0.47 3.22 15 3 Si 0.91 46.37 27.74 68.60 1.90 48.27 15 4 H -0.26 -12.69 7.11 99.48 0.71 -11.99 15 5 H -0.24 -12.50 6.74 99.48 0.67 -11.82 15 6 H -0.26 -12.26 7.11 99.48 0.71 -11.55 15 7 C -0.53 -31.45 10.04 67.95 0.68 -30.77 15 8 H 0.06 4.02 8.03 -2.91 -0.02 4.00 15 9 S -0.18 -9.54 18.55 -56.49 -1.05 -10.59 15 10 C -0.11 -4.28 6.16 71.24 0.44 -3.84 15 11 C 0.54 19.73 7.80 87.66 0.68 20.41 15 12 O -0.55 -25.73 15.57 -3.04 -0.05 -25.77 15 13 N -0.70 -16.90 5.15 -442.57 -2.28 -19.18 15 14 C 0.11 2.19 3.23 44.98 0.15 2.34 15 15 H 0.11 2.58 7.67 -2.39 -0.02 2.56 15 16 C -0.12 -0.74 6.87 31.65 0.22 -0.52 15 17 C 0.10 0.43 7.78 86.83 0.68 1.10 15 18 N -0.72 -10.20 6.24 -459.82 -2.87 -13.07 15 19 C 0.49 12.75 8.06 87.90 0.71 13.46 15 20 O -0.58 -23.13 17.98 -3.05 -0.05 -23.18 15 21 H 0.28 15.82 8.31 -92.70 -0.77 15.05 15 22 H 0.11 4.05 8.14 -2.40 -0.02 4.03 15 23 H 0.12 4.22 8.14 -2.40 -0.02 4.20 15 24 H 0.42 6.79 8.38 -92.71 -0.78 6.02 15 25 H 0.11 0.30 7.80 -2.38 -0.02 0.28 15 26 H 0.13 0.20 8.14 -2.39 -0.02 0.18 15 27 H 0.10 0.13 8.14 -2.38 -0.02 0.11 15 28 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 15 29 H 0.42 4.92 8.96 -92.70 -0.83 4.09 15 Total: -1.00 -88.88 271.45 -0.53 -89.41 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -0.45 Total: 4.99 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 4.02 Total: 5.41 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -4.85 Total: -88.53 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -0.10 Total: -48.95 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.90 Total: 48.27 kcal Atomic # 16 Polarization: -9.54 SS G_CDS: -1.05 Total: -10.59 kcal Total: -88.88 -0.53 -89.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699142017.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.644 kcal (2) G-P(sol) polarization free energy of solvation -88.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds