Wall clock time and date at job start Mon Mar 30 2020 04:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47089 * 2 1 4 4 C 1.50693 * 109.46997 * 120.00023 * 2 1 3 5 5 H 1.08000 * 120.00302 * 114.36344 * 4 2 1 6 6 C 1.37886 * 120.00163 * 294.36365 * 4 2 1 7 7 N 1.31511 * 119.99772 * 156.60071 * 6 4 2 8 8 Si 1.86801 * 119.99628 * 336.87625 * 6 4 2 9 9 H 1.48498 * 109.46677 * 179.72810 * 8 6 4 10 10 H 1.48500 * 109.47133 * 299.72373 * 8 6 4 11 11 H 1.48495 * 109.47357 * 59.72138 * 8 6 4 12 12 O 1.45200 * 109.47139 * 240.00135 * 2 1 3 13 13 C 1.34231 * 117.00204 * 89.99914 * 12 2 1 14 14 O 1.20821 * 119.99993 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99878 * 179.97438 * 13 12 2 16 16 C 1.52580 * 109.22885 * 301.23847 * 15 13 12 17 17 C 1.53096 * 109.95806 * 169.00391 * 16 15 13 18 18 S 1.81747 * 108.83963 * 63.02418 * 17 16 15 19 19 C 1.81750 * 102.22380 * 306.73462 * 18 17 16 20 20 C 1.52582 * 109.22431 * 180.02562 * 15 13 12 21 21 H 1.09003 * 109.46967 * 293.11361 * 1 2 3 22 22 H 1.09007 * 109.46955 * 53.10589 * 1 2 3 23 23 H 1.08994 * 109.47507 * 173.10845 * 1 2 3 24 24 H 0.96991 * 120.00582 * 355.20986 * 7 6 4 25 25 H 1.09001 * 109.22006 * 60.60442 * 15 13 12 26 26 H 1.09001 * 109.38821 * 289.15352 * 16 15 13 27 27 H 1.09005 * 109.39077 * 48.85528 * 16 15 13 28 28 H 1.09002 * 109.57632 * 303.22088 * 17 16 15 29 29 H 1.08998 * 109.57495 * 182.83255 * 17 16 15 30 30 H 1.08999 * 109.57262 * 293.46264 * 19 18 17 31 31 H 1.08994 * 109.57751 * 173.07015 * 19 18 17 32 32 H 1.09001 * 109.38897 * 311.14411 * 20 15 13 33 33 H 1.08996 * 109.39356 * 70.94741 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5760 -1.6385 1.1340 6 6 1.7977 -0.1755 2.4794 7 7 1.8023 -0.9538 3.5395 8 14 1.4656 1.6534 2.6648 9 1 1.2397 1.9727 4.0973 10 1 2.6338 2.4218 2.1647 11 1 0.2595 2.0196 1.8797 12 8 2.0140 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2812 14 8 1.9982 1.2518 -2.2504 15 6 2.7193 -0.5770 -3.5492 16 6 4.0612 -1.2496 -3.2749 17 6 4.4559 -2.1317 -4.4623 18 16 4.6767 -1.0792 -5.9275 19 6 3.1039 -0.1706 -5.9892 20 6 2.8619 0.4908 -4.6297 21 1 -0.3633 0.4034 0.9452 22 1 -0.3633 0.6170 -0.8219 23 1 -0.3634 -1.0202 -0.1233 24 1 1.9014 -1.9131 3.4365 25 1 2.0025 -1.3288 -3.8794 26 1 4.8240 -0.4862 -3.1218 27 1 3.9813 -1.8643 -2.3782 28 1 3.6692 -2.8618 -4.6524 29 1 5.3897 -2.6478 -4.2393 30 1 2.2908 -0.8625 -6.2089 31 1 3.1543 0.5946 -6.7637 32 1 1.9491 1.0849 -4.6740 33 1 3.7043 1.1392 -4.3888 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709574.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:47 Heat of formation + Delta-G solvation = -109.927475 kcal Electronic energy + Delta-G solvation = -16012.520495 eV Core-core repulsion = 13356.703398 eV Total energy + Delta-G solvation = -2655.817097 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.07086 -36.96601 -35.64917 -33.29584 -31.68341 -30.48493 -28.13954 -25.00291 -23.25841 -22.66535 -20.70402 -19.53636 -17.83074 -17.09978 -16.98875 -15.96593 -15.26553 -14.74049 -14.02725 -13.89845 -13.67275 -13.30099 -13.17964 -12.95433 -12.66916 -12.53258 -12.21252 -11.72752 -11.59530 -11.45558 -11.12456 -10.63117 -10.53417 -10.20306 -10.08556 -9.94322 -9.77564 -9.68831 -9.04839 -8.36258 -7.85199 -6.70051 -4.27943 1.60360 2.35663 2.72853 3.30807 3.36099 3.38024 3.53925 4.35275 4.47710 4.59415 4.71542 4.77906 5.01403 5.01595 5.16488 5.25804 5.34202 5.50666 5.61681 5.76934 5.82183 6.06454 6.09848 6.16564 6.40416 6.43923 6.66040 7.10148 7.32664 7.78899 8.20233 8.41424 8.79195 9.36830 10.70672 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.043572 B = 0.005633 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.463730 B = 4969.819100 C = 5254.241557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.197 3.803 3 H 0.037 0.963 4 C -0.615 4.615 5 H 0.069 0.931 6 C 0.047 3.953 7 N -0.885 5.885 8 Si 1.029 2.971 9 H -0.278 1.278 10 H -0.279 1.279 11 H -0.274 1.274 12 O -0.343 6.343 13 C 0.457 3.543 14 O -0.520 6.520 15 C -0.089 4.089 16 C -0.117 4.117 17 C -0.075 4.075 18 S -0.277 6.277 19 C -0.077 4.077 20 C -0.108 4.108 21 H 0.069 0.931 22 H 0.029 0.971 23 H 0.053 0.947 24 H 0.273 0.727 25 H 0.103 0.897 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 -0.460 -16.629 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.143 3.857 3 H 0.055 0.945 4 C -0.652 4.652 5 H 0.087 0.913 6 C -0.161 4.161 7 N -0.516 5.516 8 Si 0.855 3.145 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.200 1.200 12 O -0.258 6.258 13 C 0.299 3.701 14 O -0.410 6.410 15 C -0.108 4.108 16 C -0.156 4.156 17 C -0.223 4.223 18 S -0.051 6.051 19 C -0.225 4.225 20 C -0.147 4.147 21 H 0.087 0.913 22 H 0.049 0.951 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.105 0.895 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.646 1.111 -16.112 16.366 hybrid contribution -0.853 -1.265 -0.293 1.554 sum 1.793 -0.154 -16.406 16.504 Atomic orbital electron populations 1.22495 0.98070 1.00842 1.00777 1.20874 0.90908 0.93960 0.79951 0.94545 1.21837 1.42252 1.11625 0.89524 0.91270 1.25615 0.93193 1.05940 0.91327 1.70854 1.42604 1.06676 1.31509 0.84251 0.77791 0.75684 0.76728 1.20327 1.20456 1.20018 1.86536 1.75501 1.43010 1.20799 1.23269 0.74707 0.85958 0.86150 1.90586 1.48930 1.16884 1.84649 1.20990 0.99136 0.98996 0.91674 1.21715 0.95527 0.99752 0.98572 1.23469 1.05972 0.98822 0.94009 1.86849 1.26879 1.52138 1.39258 1.23464 0.96537 1.01756 1.00733 1.21619 1.04773 0.97142 0.91198 0.91256 0.95146 0.92756 0.91651 0.87885 0.89904 0.88609 0.89473 0.87240 0.89673 0.87371 0.89455 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 9.27 37.16 0.34 -3.42 16 2 C 0.20 4.96 2.15 -27.89 -0.06 4.90 16 3 H 0.04 0.96 5.73 -51.93 -0.30 0.66 16 4 C -0.62 -17.40 9.11 -34.44 -0.31 -17.72 16 5 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 6 C 0.05 1.33 5.19 -17.82 -0.09 1.23 16 7 N -0.88 -26.30 13.70 55.43 0.76 -25.54 16 8 Si 1.03 24.83 26.44 -169.99 -4.50 20.33 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.20 6.15 56.52 0.35 -5.85 16 12 O -0.34 -7.74 9.50 -39.26 -0.37 -8.11 16 13 C 0.46 8.83 7.22 36.01 0.26 9.09 16 14 O -0.52 -11.30 14.98 -18.75 -0.28 -11.58 16 15 C -0.09 -1.22 2.36 -92.20 -0.22 -1.44 16 16 C -0.12 -1.48 5.03 -26.90 -0.14 -1.61 16 17 C -0.07 -0.77 6.45 37.21 0.24 -0.53 16 18 S -0.28 -3.07 22.33 -107.50 -2.40 -5.47 16 19 C -0.08 -0.75 6.46 37.22 0.24 -0.50 16 20 C -0.11 -1.31 4.51 -26.89 -0.12 -1.43 16 21 H 0.07 1.61 5.48 -51.93 -0.28 1.32 16 22 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 23 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.27 8.05 8.73 -40.82 -0.36 7.69 16 25 H 0.10 1.25 8.08 -51.93 -0.42 0.83 16 26 H 0.08 1.09 8.05 -51.93 -0.42 0.67 16 27 H 0.10 1.32 7.78 -51.93 -0.40 0.92 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.09 7.69 -51.93 -0.40 0.69 16 33 H 0.08 1.10 8.05 -51.93 -0.42 0.68 16 LS Contribution 281.55 15.07 4.24 4.24 Total: -1.00 -30.68 281.55 -7.21 -37.89 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -4.81 Total: -0.35 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 0.14 Total: -11.42 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.76 Total: -25.54 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.65 Total: -19.69 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -4.50 Total: 20.33 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.40 Total: -5.47 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.68 -7.21 -37.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709574.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.039 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds