Wall clock time and date at job start Mon Mar 30 2020 04:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47089 * 2 1 4 4 C 1.50693 * 109.46997 * 120.00023 * 2 1 3 5 5 H 1.08000 * 120.00302 * 114.36344 * 4 2 1 6 6 C 1.37886 * 120.00163 * 294.36365 * 4 2 1 7 7 N 1.31511 * 119.99772 * 156.60071 * 6 4 2 8 8 Si 1.86801 * 119.99628 * 336.87625 * 6 4 2 9 9 H 1.48498 * 109.46677 * 179.72810 * 8 6 4 10 10 H 1.48500 * 109.47133 * 299.72373 * 8 6 4 11 11 H 1.48495 * 109.47357 * 59.72138 * 8 6 4 12 12 O 1.45200 * 109.47139 * 240.00135 * 2 1 3 13 13 C 1.34231 * 117.00204 * 89.99914 * 12 2 1 14 14 O 1.20821 * 119.99993 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99878 * 179.97438 * 13 12 2 16 16 C 1.52580 * 109.22885 * 301.23847 * 15 13 12 17 17 C 1.53096 * 109.95806 * 169.00391 * 16 15 13 18 18 S 1.81747 * 108.83963 * 63.02418 * 17 16 15 19 19 C 1.81750 * 102.22380 * 306.73462 * 18 17 16 20 20 C 1.52582 * 109.22431 * 180.02562 * 15 13 12 21 21 H 1.09003 * 109.46967 * 293.11361 * 1 2 3 22 22 H 1.09007 * 109.46955 * 53.10589 * 1 2 3 23 23 H 1.08994 * 109.47507 * 173.10845 * 1 2 3 24 24 H 0.96991 * 120.00582 * 355.20986 * 7 6 4 25 25 H 1.09001 * 109.22006 * 60.60442 * 15 13 12 26 26 H 1.09001 * 109.38821 * 289.15352 * 16 15 13 27 27 H 1.09005 * 109.39077 * 48.85528 * 16 15 13 28 28 H 1.09002 * 109.57632 * 303.22088 * 17 16 15 29 29 H 1.08998 * 109.57495 * 182.83255 * 17 16 15 30 30 H 1.08999 * 109.57262 * 293.46264 * 19 18 17 31 31 H 1.08994 * 109.57751 * 173.07015 * 19 18 17 32 32 H 1.09001 * 109.38897 * 311.14411 * 20 15 13 33 33 H 1.08996 * 109.39356 * 70.94741 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5760 -1.6385 1.1340 6 6 1.7977 -0.1755 2.4794 7 7 1.8023 -0.9538 3.5395 8 14 1.4656 1.6534 2.6648 9 1 1.2397 1.9727 4.0973 10 1 2.6338 2.4218 2.1647 11 1 0.2595 2.0196 1.8797 12 8 2.0140 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2812 14 8 1.9982 1.2518 -2.2504 15 6 2.7193 -0.5770 -3.5492 16 6 4.0612 -1.2496 -3.2749 17 6 4.4559 -2.1317 -4.4623 18 16 4.6767 -1.0792 -5.9275 19 6 3.1039 -0.1706 -5.9892 20 6 2.8619 0.4908 -4.6297 21 1 -0.3633 0.4034 0.9452 22 1 -0.3633 0.6170 -0.8219 23 1 -0.3634 -1.0202 -0.1233 24 1 1.9014 -1.9131 3.4365 25 1 2.0025 -1.3288 -3.8794 26 1 4.8240 -0.4862 -3.1218 27 1 3.9813 -1.8643 -2.3782 28 1 3.6692 -2.8618 -4.6524 29 1 5.3897 -2.6478 -4.2393 30 1 2.2908 -0.8625 -6.2089 31 1 3.1543 0.5946 -6.7637 32 1 1.9491 1.0849 -4.6740 33 1 3.7043 1.1392 -4.3888 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709574.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:47 Heat of formation + Delta-G solvation = -127.752240 kcal Electronic energy + Delta-G solvation = -16013.293435 eV Core-core repulsion = 13356.703398 eV Total energy + Delta-G solvation = -2656.590037 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.65579 -38.35650 -37.15911 -35.39203 -32.66630 -32.37256 -29.23005 -27.05913 -24.37655 -23.96979 -22.26383 -21.06355 -19.88993 -18.64810 -18.04378 -17.57200 -16.78083 -15.87043 -15.59840 -15.13243 -15.02689 -14.87329 -14.54145 -14.27494 -13.92526 -13.75807 -13.72074 -13.57039 -13.17953 -12.55499 -12.50392 -12.18928 -12.15783 -11.88510 -11.67118 -11.47529 -11.40626 -11.11568 -10.69701 -10.55742 -8.96739 -8.70427 -6.55517 0.78777 1.18551 1.39526 1.43988 1.54422 1.64755 1.87062 2.34600 2.83071 3.42409 3.53485 3.65774 3.87729 4.03353 4.18184 4.23495 4.27239 4.41967 4.49808 4.54291 4.59770 4.72941 4.79096 4.84313 4.88304 5.02673 5.11414 5.25644 5.44515 5.82717 5.92353 6.37361 6.83524 7.18215 8.43577 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.043572 B = 0.005633 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.463730 B = 4969.819100 C = 5254.241557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.196 3.804 3 H 0.028 0.972 4 C -0.626 4.626 5 H 0.034 0.966 6 C 0.007 3.993 7 N -0.909 5.909 8 Si 1.065 2.935 9 H -0.271 1.271 10 H -0.271 1.271 11 H -0.247 1.247 12 O -0.356 6.356 13 C 0.452 3.548 14 O -0.544 6.544 15 C -0.080 4.080 16 C -0.114 4.114 17 C -0.065 4.065 18 S -0.299 6.299 19 C -0.065 4.065 20 C -0.103 4.103 21 H 0.066 0.934 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.262 0.738 25 H 0.128 0.872 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 0.178 -18.583 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.141 3.859 3 H 0.045 0.955 4 C -0.663 4.663 5 H 0.052 0.948 6 C -0.196 4.196 7 N -0.542 5.542 8 Si 0.885 3.115 9 H -0.196 1.196 10 H -0.196 1.196 11 H -0.172 1.172 12 O -0.272 6.272 13 C 0.296 3.704 14 O -0.435 6.435 15 C -0.099 4.099 16 C -0.153 4.153 17 C -0.212 4.212 18 S -0.074 6.074 19 C -0.213 4.213 20 C -0.142 4.142 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.146 0.854 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.122 0.878 29 H 0.139 0.861 30 H 0.122 0.878 31 H 0.144 0.856 32 H 0.104 0.896 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.034 1.731 -18.096 18.292 hybrid contribution -0.594 -1.520 0.265 1.653 sum 1.440 0.211 -17.831 17.890 Atomic orbital electron populations 1.22369 0.96112 1.01582 1.01429 1.20628 0.92265 0.92903 0.80078 0.95461 1.21945 1.42117 1.10601 0.91623 0.94758 1.26885 0.92358 1.09303 0.91011 1.70953 1.44639 1.06231 1.32354 0.83796 0.79115 0.71017 0.77573 1.19598 1.19620 1.17152 1.86524 1.76035 1.43471 1.21169 1.24363 0.73666 0.85809 0.86535 1.90566 1.49926 1.18013 1.84997 1.21158 0.99903 0.99828 0.88985 1.21669 0.94667 0.99641 0.99302 1.23434 1.07179 0.98341 0.92291 1.87002 1.28333 1.52662 1.39368 1.23476 0.96136 1.02256 0.99423 1.21582 1.04201 0.96527 0.91903 0.91557 0.93101 0.92374 0.92864 0.85428 0.90897 0.90105 0.87795 0.86090 0.87754 0.85627 0.89586 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.98 9.27 71.98 0.67 -6.31 16 2 C 0.20 9.80 2.15 29.85 0.06 9.86 16 3 H 0.03 1.43 5.73 -2.38 -0.01 1.41 16 4 C -0.63 -36.08 9.11 25.60 0.23 -35.85 16 5 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 6 C 0.01 0.39 5.19 84.66 0.44 0.83 16 7 N -0.91 -54.97 13.70 21.45 0.29 -54.67 16 8 Si 1.06 49.29 26.44 68.60 1.81 51.10 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.25 -10.34 6.15 99.48 0.61 -9.73 16 12 O -0.36 -16.00 9.50 -51.42 -0.49 -16.49 16 13 C 0.45 17.05 7.22 71.24 0.51 17.57 16 14 O -0.54 -23.09 14.98 21.98 0.33 -22.76 16 15 C -0.08 -2.05 2.36 -11.82 -0.03 -2.08 16 16 C -0.11 -2.74 5.03 30.49 0.15 -2.58 16 17 C -0.06 -1.17 6.45 72.01 0.46 -0.71 16 18 S -0.30 -5.88 22.33 -56.49 -1.26 -7.14 16 19 C -0.07 -1.05 6.46 72.02 0.47 -0.59 16 20 C -0.10 -2.26 4.51 30.49 0.14 -2.12 16 21 H 0.07 2.95 5.48 -2.39 -0.01 2.94 16 22 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 23 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.26 15.96 8.73 -92.71 -0.81 15.15 16 25 H 0.13 2.70 8.08 -2.39 -0.02 2.68 16 26 H 0.07 1.88 8.05 -2.39 -0.02 1.87 16 27 H 0.08 2.20 7.78 -2.38 -0.02 2.19 16 28 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.13 1.65 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.94 7.69 -2.39 -0.02 1.92 16 33 H 0.07 1.77 8.05 -2.39 -0.02 1.75 16 Total: -1.00 -66.39 281.55 4.75 -61.64 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.95 Total: 10.31 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 3.11 Total: -21.98 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.29 Total: -54.67 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.16 Total: -39.25 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 1.81 Total: 51.10 kcal Atomic # 16 Polarization: -5.88 SS G_CDS: -1.26 Total: -7.14 kcal Total: -66.39 4.75 -61.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709574.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.113 kcal (2) G-P(sol) polarization free energy of solvation -66.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds