Wall clock time and date at job start Mon Mar 30 2020 04:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47436 * 2 1 4 4 C 1.50696 * 109.47319 * 239.99867 * 2 1 3 5 5 H 1.08003 * 120.00747 * 245.46309 * 4 2 1 6 6 C 1.37882 * 120.00055 * 65.46131 * 4 2 1 7 7 N 1.31523 * 119.99515 * 9.55351 * 6 4 2 8 8 Si 1.86797 * 120.00352 * 189.55155 * 6 4 2 9 9 H 1.48500 * 109.46648 * 84.99764 * 8 6 4 10 10 H 1.48507 * 109.47031 * 204.99366 * 8 6 4 11 11 H 1.48491 * 109.47093 * 324.99779 * 8 6 4 12 12 O 1.45204 * 109.47033 * 120.00172 * 2 1 3 13 13 C 1.34223 * 116.99998 * 269.99923 * 12 2 1 14 14 O 1.20833 * 120.00171 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00041 * 180.02562 * 13 12 2 16 16 H 1.08995 * 109.31067 * 59.74930 * 15 13 12 17 17 C 1.52580 * 109.38899 * 179.50520 * 15 13 12 18 18 C 1.52584 * 110.72453 * 190.82151 * 17 15 13 19 19 C 1.53104 * 109.95656 * 289.32620 * 18 17 15 20 20 S 1.81737 * 108.84130 * 63.02145 * 19 18 17 21 21 C 1.53095 * 109.38617 * 299.99679 * 15 13 12 22 22 H 1.08996 * 109.47393 * 183.66169 * 1 2 3 23 23 H 1.09006 * 109.47027 * 303.66437 * 1 2 3 24 24 H 1.09004 * 109.46932 * 63.66256 * 1 2 3 25 25 H 0.96998 * 119.99586 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.22642 * 311.14324 * 17 15 13 27 27 H 1.09001 * 109.22908 * 70.54381 * 17 15 13 28 28 H 1.08997 * 109.38854 * 169.17922 * 18 17 15 29 29 H 1.08995 * 109.39199 * 49.47063 * 18 17 15 30 30 H 1.09004 * 109.57271 * 303.21664 * 19 18 17 31 31 H 1.08996 * 109.57532 * 182.83546 * 19 18 17 32 32 H 1.08998 * 109.57804 * 57.02535 * 21 15 13 33 33 H 1.09001 * 109.68685 * 296.69358 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5785 -1.6371 -1.1339 6 6 1.7946 -0.1774 -2.4796 7 7 1.2992 1.0356 -2.5935 8 14 2.1762 -1.1779 -4.0102 9 1 1.0242 -2.0609 -4.3242 10 1 2.4229 -0.2611 -5.1521 11 1 3.3846 -2.0071 -3.7709 12 8 2.0139 -0.6845 1.1856 13 6 2.2171 0.0639 2.2811 14 8 1.9982 1.2518 2.2504 15 6 2.7192 -0.5772 3.5492 16 1 3.6861 -1.0430 3.3591 17 6 2.8744 0.4895 4.6290 18 6 3.6269 -0.0673 5.8339 19 6 2.7451 -1.0700 6.5830 20 16 2.3867 -2.4722 5.4838 21 6 1.7223 -1.6445 4.0084 22 1 -0.3634 -1.0255 0.0656 23 1 -0.3633 0.5697 0.8554 24 1 -0.3633 0.4560 -0.9210 25 1 1.1316 1.4105 -3.4723 26 1 3.4266 1.3359 4.2207 27 1 1.8871 0.8248 4.9468 28 1 3.8939 0.7504 6.5033 29 1 4.5345 -0.5665 5.4947 30 1 1.8124 -0.5882 6.8763 31 1 3.2692 -1.4259 7.4700 32 1 1.5781 -2.3759 3.2132 33 1 0.7685 -1.1759 4.2510 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810583692.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:49 Heat of formation + Delta-G solvation = -111.534107 kcal Electronic energy + Delta-G solvation = -15908.487603 eV Core-core repulsion = 13252.600837 eV Total energy + Delta-G solvation = -2655.886766 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.85258 -36.87672 -35.47290 -33.26927 -31.91994 -29.65843 -27.32150 -25.32524 -24.43785 -22.15303 -20.75790 -19.37286 -17.42977 -16.60860 -16.43355 -15.67183 -15.21232 -14.77925 -14.47387 -14.29247 -13.54560 -13.34227 -12.94314 -12.89086 -12.31174 -11.91589 -11.61883 -11.48548 -11.28579 -11.15894 -11.04228 -10.93444 -10.82002 -10.48834 -10.33127 -9.94872 -9.60006 -9.44692 -8.98012 -8.50416 -7.79071 -6.22500 -4.26472 1.64303 2.34010 2.94589 3.24390 3.29637 3.32491 3.60444 4.31935 4.55434 4.62467 4.71651 4.79621 5.06974 5.11590 5.27160 5.35884 5.51240 5.58394 5.66042 5.78313 5.89900 6.04493 6.17763 6.55231 6.77422 6.81586 7.07263 7.51922 7.63885 7.83316 8.09137 8.58598 8.86345 9.37956 10.86837 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.043317 B = 0.005294 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.240971 B = 5287.809691 C = 5541.276982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.213 3.787 3 H 0.053 0.947 4 C -0.525 4.525 5 H 0.069 0.931 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.908 3.092 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.271 1.271 12 O -0.354 6.354 13 C 0.458 3.542 14 O -0.517 6.517 15 C -0.082 4.082 16 H 0.115 0.885 17 C -0.116 4.116 18 C -0.120 4.120 19 C -0.086 4.086 20 S -0.260 6.260 21 C -0.070 4.070 22 H 0.039 0.961 23 H 0.020 0.980 24 H 0.082 0.918 25 H 0.267 0.733 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 -3.544 15.195 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.160 3.840 3 H 0.071 0.929 4 C -0.562 4.562 5 H 0.087 0.913 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.735 3.265 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.270 6.270 13 C 0.299 3.701 14 O -0.407 6.407 15 C -0.103 4.103 16 H 0.133 0.867 17 C -0.153 4.153 18 C -0.159 4.159 19 C -0.234 4.234 20 S -0.033 6.033 21 C -0.218 4.218 22 H 0.058 0.942 23 H 0.039 0.961 24 H 0.101 0.899 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.140 0.860 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.342 -4.176 15.198 15.935 hybrid contribution -0.166 0.973 -1.166 1.527 sum 2.176 -3.203 14.033 14.557 Atomic orbital electron populations 1.22081 0.97917 0.99568 1.01079 1.20654 0.90968 0.94495 0.77861 0.92911 1.20973 1.37279 1.09019 0.88977 0.91268 1.24906 0.95014 0.94782 0.99094 1.69991 1.44020 1.13803 1.24554 0.86341 0.78970 0.79746 0.81422 1.20211 1.21049 1.19623 1.86481 1.75558 1.43623 1.21293 1.23169 0.75037 0.85922 0.86016 1.90604 1.48460 1.16903 1.84752 1.21226 1.01058 0.96603 0.91449 0.86727 1.21425 1.02165 0.97862 0.93881 1.21741 0.98805 0.98526 0.96785 1.23506 1.03186 0.97020 0.99678 1.86891 1.84262 1.16105 1.16037 1.23408 0.99921 1.00595 0.97878 0.94155 0.96107 0.89915 0.92365 0.89613 0.91063 0.90371 0.90321 0.89784 0.87788 0.86041 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.42 37.15 0.35 -3.32 16 2 C 0.21 5.66 2.42 -27.89 -0.07 5.59 16 3 H 0.05 1.57 7.10 -51.93 -0.37 1.20 16 4 C -0.52 -14.68 8.82 -34.44 -0.30 -14.98 16 5 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 6 C 0.06 1.79 5.17 -17.81 -0.09 1.70 16 7 N -0.89 -25.36 12.16 55.43 0.67 -24.69 16 8 Si 0.91 21.02 29.55 -169.99 -5.02 16.00 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 O -0.35 -8.23 9.71 -39.24 -0.38 -8.61 16 13 C 0.46 9.28 7.21 36.01 0.26 9.54 16 14 O -0.52 -11.92 14.99 -18.76 -0.28 -12.20 16 15 C -0.08 -1.21 2.47 -91.94 -0.23 -1.44 16 16 H 0.11 1.59 8.06 -51.93 -0.42 1.17 16 17 C -0.12 -1.45 4.38 -27.16 -0.12 -1.56 16 18 C -0.12 -1.12 5.75 -26.89 -0.15 -1.28 16 19 C -0.09 -0.79 6.45 37.21 0.24 -0.55 16 20 S -0.26 -3.11 22.33 -107.50 -2.40 -5.51 16 21 C -0.07 -0.93 5.68 37.21 0.21 -0.72 16 22 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 2.17 6.83 -51.93 -0.35 1.82 16 25 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.09 1.16 7.70 -51.93 -0.40 0.76 16 27 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.12 1.71 8.05 -51.93 -0.42 1.29 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 286.71 15.07 4.32 4.32 Total: -1.00 -30.10 286.71 -7.87 -37.98 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.88 Total: -0.27 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 0.10 Total: -7.02 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.67 Total: -24.69 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.66 Total: -20.81 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.40 Total: -5.51 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.10 -7.87 -37.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810583692.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.559 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds