Wall clock time and date at job start Mon Mar 30 2020 04:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47436 * 2 1 4 4 C 1.50696 * 109.47319 * 239.99867 * 2 1 3 5 5 H 1.08003 * 120.00747 * 245.46309 * 4 2 1 6 6 C 1.37882 * 120.00055 * 65.46131 * 4 2 1 7 7 N 1.31523 * 119.99515 * 9.55351 * 6 4 2 8 8 Si 1.86797 * 120.00352 * 189.55155 * 6 4 2 9 9 H 1.48500 * 109.46648 * 84.99764 * 8 6 4 10 10 H 1.48507 * 109.47031 * 204.99366 * 8 6 4 11 11 H 1.48491 * 109.47093 * 324.99779 * 8 6 4 12 12 O 1.45204 * 109.47033 * 120.00172 * 2 1 3 13 13 C 1.34223 * 116.99998 * 269.99923 * 12 2 1 14 14 O 1.20833 * 120.00171 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00041 * 180.02562 * 13 12 2 16 16 H 1.08995 * 109.31067 * 59.74930 * 15 13 12 17 17 C 1.52580 * 109.38899 * 179.50520 * 15 13 12 18 18 C 1.52584 * 110.72453 * 190.82151 * 17 15 13 19 19 C 1.53104 * 109.95656 * 289.32620 * 18 17 15 20 20 S 1.81737 * 108.84130 * 63.02145 * 19 18 17 21 21 C 1.53095 * 109.38617 * 299.99679 * 15 13 12 22 22 H 1.08996 * 109.47393 * 183.66169 * 1 2 3 23 23 H 1.09006 * 109.47027 * 303.66437 * 1 2 3 24 24 H 1.09004 * 109.46932 * 63.66256 * 1 2 3 25 25 H 0.96998 * 119.99586 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.22642 * 311.14324 * 17 15 13 27 27 H 1.09001 * 109.22908 * 70.54381 * 17 15 13 28 28 H 1.08997 * 109.38854 * 169.17922 * 18 17 15 29 29 H 1.08995 * 109.39199 * 49.47063 * 18 17 15 30 30 H 1.09004 * 109.57271 * 303.21664 * 19 18 17 31 31 H 1.08996 * 109.57532 * 182.83546 * 19 18 17 32 32 H 1.08998 * 109.57804 * 57.02535 * 21 15 13 33 33 H 1.09001 * 109.68685 * 296.69358 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5785 -1.6371 -1.1339 6 6 1.7946 -0.1774 -2.4796 7 7 1.2992 1.0356 -2.5935 8 14 2.1762 -1.1779 -4.0102 9 1 1.0242 -2.0609 -4.3242 10 1 2.4229 -0.2611 -5.1521 11 1 3.3846 -2.0071 -3.7709 12 8 2.0139 -0.6845 1.1856 13 6 2.2171 0.0639 2.2811 14 8 1.9982 1.2518 2.2504 15 6 2.7192 -0.5772 3.5492 16 1 3.6861 -1.0430 3.3591 17 6 2.8744 0.4895 4.6290 18 6 3.6269 -0.0673 5.8339 19 6 2.7451 -1.0700 6.5830 20 16 2.3867 -2.4722 5.4838 21 6 1.7223 -1.6445 4.0084 22 1 -0.3634 -1.0255 0.0656 23 1 -0.3633 0.5697 0.8554 24 1 -0.3633 0.4560 -0.9210 25 1 1.1316 1.4105 -3.4723 26 1 3.4266 1.3359 4.2207 27 1 1.8871 0.8248 4.9468 28 1 3.8939 0.7504 6.5033 29 1 4.5345 -0.5665 5.4947 30 1 1.8124 -0.5882 6.8763 31 1 3.2692 -1.4259 7.4700 32 1 1.5781 -2.3759 3.2132 33 1 0.7685 -1.1759 4.2510 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810583692.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:49 Heat of formation + Delta-G solvation = -128.029267 kcal Electronic energy + Delta-G solvation = -15909.202887 eV Core-core repulsion = 13252.600837 eV Total energy + Delta-G solvation = -2656.602050 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.53942 -38.26263 -37.06681 -35.31805 -33.01118 -31.65136 -28.28294 -27.44173 -25.79569 -23.57394 -22.17778 -20.92736 -19.00411 -18.52537 -17.88178 -17.18503 -16.80371 -16.26137 -15.82244 -15.48727 -14.88503 -14.54261 -14.26621 -14.17899 -13.96104 -13.71113 -13.27524 -12.97974 -12.79589 -12.64191 -12.55143 -12.45096 -12.17873 -12.06023 -11.96966 -11.58683 -11.25461 -11.01852 -10.67363 -10.61493 -8.72783 -8.33185 -6.46892 0.68286 1.19990 1.40830 1.43538 1.51639 1.55608 2.01927 2.40506 2.99027 3.50326 3.54492 3.72440 3.87484 4.05452 4.14849 4.36149 4.49202 4.50447 4.60731 4.72163 4.74724 4.79684 4.81398 4.98038 5.06485 5.11469 5.25665 5.44272 5.54552 5.82832 6.05706 6.58066 6.91521 7.24058 8.76792 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.043317 B = 0.005294 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.240971 B = 5287.809691 C = 5541.276982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.214 3.786 3 H 0.011 0.989 4 C -0.551 4.551 5 H 0.068 0.932 6 C 0.019 3.981 7 N -0.918 5.918 8 Si 0.980 3.020 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.265 1.265 12 O -0.360 6.360 13 C 0.452 3.548 14 O -0.548 6.548 15 C -0.071 4.071 16 H 0.126 0.874 17 C -0.113 4.113 18 C -0.111 4.111 19 C -0.079 4.079 20 S -0.270 6.270 21 C -0.069 4.069 22 H 0.054 0.946 23 H 0.028 0.972 24 H 0.063 0.937 25 H 0.271 0.729 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.110 0.890 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.962 -4.700 16.390 17.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.161 3.839 3 H 0.029 0.971 4 C -0.588 4.588 5 H 0.086 0.914 6 C -0.181 4.181 7 N -0.555 5.555 8 Si 0.803 3.197 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.189 1.189 12 O -0.276 6.276 13 C 0.295 3.705 14 O -0.440 6.440 15 C -0.091 4.091 16 H 0.144 0.856 17 C -0.151 4.151 18 C -0.150 4.150 19 C -0.226 4.226 20 S -0.042 6.042 21 C -0.217 4.217 22 H 0.073 0.927 23 H 0.047 0.953 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.123 0.877 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.148 0.852 32 H 0.129 0.871 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.957 -5.342 16.423 17.521 hybrid contribution -0.328 1.392 -1.434 2.025 sum 2.629 -3.950 14.989 15.722 Atomic orbital electron populations 1.21899 0.96715 1.00345 1.00377 1.20362 0.91907 0.92404 0.79226 0.97146 1.21256 1.38192 1.09265 0.90079 0.91422 1.25840 0.94397 0.95667 1.02226 1.70108 1.44537 1.15303 1.25594 0.85244 0.79211 0.78223 0.77058 1.19046 1.20394 1.18889 1.86476 1.75948 1.43732 1.21446 1.24359 0.73865 0.85704 0.86561 1.90583 1.49773 1.18413 1.85195 1.21372 1.01451 0.97425 0.88882 0.85648 1.21455 1.02464 0.96796 0.94379 1.21710 0.98317 0.99367 0.95587 1.23649 1.03923 0.95591 0.99472 1.86969 1.84157 1.17658 1.15442 1.23281 0.99678 0.99910 0.98818 0.92680 0.95335 0.91794 0.91990 0.90967 0.91317 0.87748 0.89900 0.88866 0.85242 0.87139 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.84 9.42 71.98 0.68 -6.16 16 2 C 0.21 11.78 2.42 29.84 0.07 11.85 16 3 H 0.01 0.67 7.10 -2.39 -0.02 0.65 16 4 C -0.55 -31.33 8.82 25.60 0.23 -31.11 16 5 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 6 C 0.02 1.05 5.17 84.65 0.44 1.48 16 7 N -0.92 -53.44 12.16 21.45 0.26 -53.18 16 8 Si 0.98 42.89 29.55 68.60 2.03 44.92 16 9 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 12 O -0.36 -17.18 9.71 -51.35 -0.50 -17.68 16 13 C 0.45 18.73 7.21 71.24 0.51 19.25 16 14 O -0.55 -26.11 14.99 21.94 0.33 -25.78 16 15 C -0.07 -2.03 2.47 -11.65 -0.03 -2.06 16 16 H 0.13 3.35 8.06 -2.39 -0.02 3.33 16 17 C -0.11 -2.68 4.38 30.32 0.13 -2.54 16 18 C -0.11 -1.73 5.75 30.49 0.18 -1.55 16 19 C -0.08 -1.16 6.45 72.02 0.46 -0.70 16 20 S -0.27 -5.85 22.33 -56.49 -1.26 -7.11 16 21 C -0.07 -1.77 5.68 72.01 0.41 -1.36 16 22 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 23 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 24 H 0.06 3.44 6.83 -2.38 -0.02 3.42 16 25 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 26 H 0.07 1.91 7.70 -2.39 -0.02 1.89 16 27 H 0.07 1.65 8.08 -2.39 -0.02 1.64 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.28 8.06 -2.39 -0.02 1.26 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.11 3.09 8.05 -2.39 -0.02 3.07 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -65.99 286.71 5.02 -60.97 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.08 Total: 10.76 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 3.08 Total: -12.90 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.26 Total: -53.18 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -0.17 Total: -43.46 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -5.85 SS G_CDS: -1.26 Total: -7.11 kcal Total: -65.99 5.02 -60.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810583692.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.058 kcal (2) G-P(sol) polarization free energy of solvation -65.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds