Wall clock time and date at job start Mon Mar 30 2020 04:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47418 * 2 1 4 4 C 1.50707 * 109.47259 * 120.00011 * 2 1 3 5 5 H 1.07999 * 119.99571 * 119.99858 * 4 2 1 6 6 C 1.37869 * 119.99706 * 300.00128 * 4 2 1 7 7 N 1.31522 * 119.99614 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00335 * 0.02562 * 6 4 2 9 9 H 1.48491 * 109.47525 * 90.00024 * 8 6 4 10 10 H 1.48504 * 109.46975 * 210.00095 * 8 6 4 11 11 H 1.48499 * 109.46906 * 329.99796 * 8 6 4 12 12 O 1.45206 * 109.47216 * 239.99908 * 2 1 3 13 13 C 1.34222 * 116.99701 * 89.99938 * 12 2 1 14 14 O 1.20830 * 120.00310 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99893 * 179.97438 * 13 12 2 16 16 H 1.08999 * 109.30498 * 59.75409 * 15 13 12 17 17 C 1.52579 * 109.39125 * 179.50662 * 15 13 12 18 18 C 1.52582 * 110.72851 * 190.82618 * 17 15 13 19 19 C 1.53104 * 109.95444 * 289.32454 * 18 17 15 20 20 S 1.81750 * 108.83896 * 63.02320 * 19 18 17 21 21 C 1.53096 * 109.39105 * 300.00386 * 15 13 12 22 22 H 1.08999 * 109.47048 * 60.00422 * 1 2 3 23 23 H 1.08998 * 109.46920 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47132 * 300.00076 * 1 2 3 25 25 H 0.97000 * 119.99258 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.22921 * 311.14893 * 17 15 13 27 27 H 1.09002 * 109.22799 * 70.54543 * 17 15 13 28 28 H 1.09002 * 109.39340 * 169.17777 * 18 17 15 29 29 H 1.08992 * 109.39151 * 49.47084 * 18 17 15 30 30 H 1.08998 * 109.57711 * 303.21536 * 19 18 17 31 31 H 1.08994 * 109.57344 * 182.82798 * 19 18 17 32 32 H 1.08992 * 109.57819 * 57.01440 * 21 15 13 33 33 H 1.09001 * 109.68297 * 296.69293 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6247 1.2789 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9759 1.9950 3.9068 11 1 0.8469 2.1764 1.4920 12 8 2.0140 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2811 14 8 1.9982 1.2519 -2.2503 15 6 2.7193 -0.5770 -3.5491 16 1 2.0108 -1.3397 -3.8725 17 6 2.8510 0.4855 -4.6362 18 6 3.0976 -0.1608 -5.9961 19 6 4.5068 -0.7576 -6.0432 20 16 4.6281 -2.0750 -4.7969 21 6 4.0804 -1.2267 -3.2858 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.9026 -0.5284 4.4375 26 1 1.9329 1.0715 -4.6785 27 1 3.6859 1.1437 -4.3955 28 1 2.9971 0.5918 -6.7781 29 1 2.3645 -0.9506 -6.1597 30 1 5.2398 0.0192 -5.8260 31 1 4.6945 -1.1731 -7.0332 32 1 3.9896 -1.9485 -2.4742 33 1 4.8064 -0.4605 -3.0136 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810583694.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:53 Heat of formation + Delta-G solvation = -118.961294 kcal Electronic energy + Delta-G solvation = -15979.067376 eV Core-core repulsion = 13322.858543 eV Total energy + Delta-G solvation = -2656.208833 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.65196 -38.37305 -37.11695 -35.32878 -33.19132 -32.33973 -28.29330 -27.39477 -25.88227 -23.58470 -22.15527 -21.03254 -19.26634 -18.46437 -18.16865 -17.23357 -17.14205 -16.21620 -15.91949 -15.42744 -15.04142 -14.74720 -14.47555 -14.32762 -14.08826 -13.82887 -13.71019 -13.42394 -12.88269 -12.65507 -12.48187 -12.25924 -12.06977 -11.95648 -11.74743 -11.69321 -11.32225 -11.18431 -10.85693 -10.67466 -8.74464 -8.46495 -6.55732 0.65784 1.13136 1.22144 1.29470 1.38847 1.51450 1.92119 2.17710 2.86156 3.48644 3.53217 3.64162 3.86558 4.04522 4.07375 4.22516 4.35452 4.38181 4.49568 4.50431 4.61932 4.70554 4.79483 4.80874 5.00327 5.05803 5.17528 5.26290 5.31164 5.61117 6.10936 6.48428 6.81140 7.09212 8.69510 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.043437 B = 0.005772 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.458600 B = 4850.029113 C = 5272.300785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.192 3.808 3 H 0.031 0.969 4 C -0.540 4.540 5 H 0.047 0.953 6 C 0.031 3.969 7 N -0.930 5.930 8 Si 0.941 3.059 9 H -0.250 1.250 10 H -0.283 1.283 11 H -0.258 1.258 12 O -0.351 6.351 13 C 0.455 3.545 14 O -0.541 6.541 15 C -0.070 4.070 16 H 0.132 0.868 17 C -0.113 4.113 18 C -0.111 4.111 19 C -0.079 4.079 20 S -0.272 6.272 21 C -0.072 4.072 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.276 0.724 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.868 2.052 -19.994 20.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.138 3.862 3 H 0.048 0.952 4 C -0.578 4.578 5 H 0.065 0.935 6 C -0.169 4.169 7 N -0.568 5.568 8 Si 0.766 3.234 9 H -0.175 1.175 10 H -0.210 1.210 11 H -0.182 1.182 12 O -0.267 6.267 13 C 0.298 3.702 14 O -0.432 6.432 15 C -0.091 4.091 16 H 0.150 0.850 17 C -0.151 4.151 18 C -0.149 4.149 19 C -0.227 4.227 20 S -0.045 6.045 21 C -0.220 4.220 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.147 0.853 32 H 0.124 0.876 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.168 1.290 -19.883 19.959 hybrid contribution -0.639 1.726 1.185 2.189 sum 0.529 3.016 -18.698 18.947 Atomic orbital electron populations 1.22411 0.96200 1.02702 1.00805 1.20645 0.92135 0.93002 0.80452 0.95160 1.20946 1.33398 1.14009 0.89447 0.93509 1.25565 0.96876 0.99847 0.94624 1.69964 1.46139 1.41868 0.98793 0.85976 0.79926 0.79549 0.77979 1.17535 1.20952 1.18238 1.86512 1.75972 1.43230 1.20983 1.24360 0.73732 0.85738 0.86378 1.90576 1.49847 1.17897 1.84881 1.21398 0.98166 1.00237 0.89261 0.85044 1.21469 1.03998 0.96313 0.93278 1.21713 0.95574 1.01681 0.95969 1.23667 1.00764 0.98339 0.99933 1.87031 1.88118 1.23526 1.05807 1.23288 0.96923 1.03008 0.98809 0.92287 0.91095 0.92578 0.91508 0.90188 0.91491 0.87599 0.89683 0.89029 0.85270 0.87648 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.18 9.03 71.98 0.65 -6.53 16 2 C 0.19 9.64 2.15 29.85 0.06 9.71 16 3 H 0.03 1.61 6.21 -2.39 -0.01 1.60 16 4 C -0.54 -31.66 9.48 25.60 0.24 -31.41 16 5 H 0.05 3.03 8.06 -2.91 -0.02 3.00 16 6 C 0.03 1.78 5.45 84.65 0.46 2.24 16 7 N -0.93 -56.83 13.96 21.45 0.30 -56.53 16 8 Si 0.94 43.96 24.37 68.60 1.67 45.63 16 9 H -0.25 -10.76 6.87 99.48 0.68 -10.08 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.26 -11.78 6.53 99.48 0.65 -11.13 16 12 O -0.35 -15.83 9.71 -51.34 -0.50 -16.32 16 13 C 0.46 17.22 7.21 71.24 0.51 17.74 16 14 O -0.54 -22.86 15.00 21.95 0.33 -22.53 16 15 C -0.07 -1.86 2.47 -11.65 -0.03 -1.89 16 16 H 0.13 3.10 8.06 -2.39 -0.02 3.08 16 17 C -0.11 -2.38 4.38 30.32 0.13 -2.25 16 18 C -0.11 -1.52 5.75 30.49 0.18 -1.35 16 19 C -0.08 -1.13 6.45 72.02 0.46 -0.67 16 20 S -0.27 -6.00 22.33 -56.49 -1.26 -7.26 16 21 C -0.07 -1.90 5.68 72.01 0.41 -1.49 16 22 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 24 H 0.06 2.45 3.27 -2.39 -0.01 2.44 16 25 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 26 H 0.08 1.79 7.70 -2.39 -0.02 1.77 16 27 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 28 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 1.13 8.06 -2.39 -0.02 1.11 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.11 3.16 8.04 -2.39 -0.02 3.14 16 33 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -67.55 278.56 4.64 -62.91 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 1.01 Total: 10.00 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 3.08 Total: -15.90 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.30 Total: -56.53 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.17 Total: -38.86 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.67 Total: 45.63 kcal Atomic # 16 Polarization: -6.00 SS G_CDS: -1.26 Total: -7.26 kcal Total: -67.55 4.64 -62.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810583694.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.051 kcal (2) G-P(sol) polarization free energy of solvation -67.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds