Wall clock time and date at job start Mon Mar 30 2020 04:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47126 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99864 * 0.02562 * 11 10 9 13 13 O 1.34224 * 119.99727 * 179.97438 * 11 10 9 14 14 C 1.45197 * 116.99833 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47459 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.60663 * 53.88825 * 15 14 13 17 17 C 1.53853 * 109.61307 * 174.04744 * 15 14 13 18 18 C 1.55133 * 106.90408 * 167.17781 * 17 15 14 19 19 S 1.83466 * 102.20235 * 317.88489 * 18 17 15 20 20 C 1.54278 * 109.61137 * 293.55184 * 15 14 13 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 23 23 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 24 24 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 25 25 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 26 26 H 1.09004 * 109.47762 * 300.00317 * 14 13 11 27 27 H 1.09001 * 109.47346 * 60.00518 * 14 13 11 28 28 H 1.09001 * 109.97270 * 286.53936 * 17 15 14 29 29 H 1.09002 * 109.97505 * 47.81393 * 17 15 14 30 30 H 1.08994 * 110.86380 * 199.70449 * 18 17 15 31 31 H 1.09004 * 111.03350 * 76.13356 * 18 17 15 32 32 H 1.09003 * 110.39567 * 330.91641 * 20 15 14 33 33 H 1.08995 * 110.40403 * 93.21135 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2837 -4.9672 0.0011 13 8 2.1631 -6.1296 0.0008 14 6 1.3724 -7.3473 0.0020 15 6 2.3044 -8.5607 0.0020 16 1 3.0078 -8.4817 0.8309 17 6 1.4760 -9.8482 0.1535 18 6 2.4194 -11.0336 -0.1805 19 16 3.3285 -10.4049 -1.6447 20 6 3.0794 -8.6183 -1.3308 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6242 -2.5567 0.8904 23 1 0.6248 -2.5571 -0.8896 24 1 2.8720 -3.6043 -0.8895 25 1 2.8721 -3.6042 0.8905 26 1 0.7445 -7.3721 0.8926 27 1 0.7426 -7.3726 -0.8873 28 1 1.1124 -9.9387 1.1772 29 1 0.6356 -9.8342 -0.5405 30 1 1.8469 -11.9261 -0.4329 31 1 3.1033 -11.2337 0.6444 32 1 2.4914 -8.1701 -2.1318 33 1 4.0388 -8.1102 -1.2348 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813076380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:53 Heat of formation + Delta-G solvation = -136.139856 kcal Electronic energy + Delta-G solvation = -15146.781100 eV Core-core repulsion = 12489.827349 eV Total energy + Delta-G solvation = -2656.953751 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.62499 -38.57153 -36.87865 -36.02355 -33.08423 -31.25077 -28.55891 -27.30078 -24.98541 -23.91105 -21.75716 -21.34835 -19.26598 -18.37726 -17.97747 -17.60435 -17.40297 -16.54680 -15.61792 -15.50744 -15.18059 -14.92910 -14.48216 -14.09719 -13.80498 -13.69291 -13.37022 -12.97321 -12.81114 -12.69395 -12.47286 -12.15627 -12.11611 -11.93517 -11.88142 -11.72504 -11.55514 -10.92779 -10.78229 -10.56507 -8.78222 -8.71243 -6.43837 0.79075 1.12043 1.35899 1.54271 1.59680 1.65099 1.83749 2.59402 3.15242 3.36543 3.42667 3.67493 3.89329 4.01667 4.09109 4.18153 4.26586 4.27988 4.30513 4.35845 4.59952 4.66878 4.73451 4.77948 4.91079 5.05818 5.19673 5.28077 5.30405 5.88877 6.15461 6.48295 6.71293 7.41205 8.69220 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.063480 B = 0.003596 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.978297 B = 7785.616116 C = 8060.377845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.042 4.042 3 Si 1.124 2.876 4 H -0.288 1.288 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.621 4.621 8 H 0.069 0.931 9 C 0.022 3.978 10 C -0.089 4.089 11 C 0.468 3.532 12 O -0.545 6.545 13 O -0.353 6.353 14 C 0.069 3.931 15 C -0.086 4.086 16 H 0.105 0.895 17 C -0.119 4.119 18 C -0.053 4.053 19 S -0.351 6.351 20 C -0.057 4.057 21 H 0.253 0.747 22 H -0.012 1.012 23 H -0.014 1.014 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.298 -21.267 1.207 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.239 4.239 3 Si 0.944 3.056 4 H -0.214 1.214 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.659 4.659 8 H 0.087 0.913 9 C -0.015 4.015 10 C -0.127 4.127 11 C 0.313 3.687 12 O -0.435 6.435 13 O -0.270 6.270 14 C -0.006 4.006 15 C -0.106 4.106 16 H 0.123 0.877 17 C -0.157 4.157 18 C -0.201 4.201 19 S -0.125 6.125 20 C -0.205 4.205 21 H 0.062 0.938 22 H 0.006 0.994 23 H 0.005 0.995 24 H 0.133 0.867 25 H 0.134 0.866 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.131 0.869 29 H 0.102 0.898 30 H 0.139 0.861 31 H 0.126 0.874 32 H 0.105 0.895 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.335 -20.292 0.316 21.579 hybrid contribution -1.030 -1.104 0.681 1.656 sum 6.306 -21.395 0.997 22.328 Atomic orbital electron populations 1.70905 1.08320 1.29853 1.48481 1.27621 0.96490 1.07328 0.92489 0.82871 0.73997 0.70398 0.78372 1.21370 1.18947 1.18855 1.22452 0.95357 0.92444 1.55602 0.91287 1.18973 0.94395 0.93396 0.94758 1.21374 0.99052 0.85922 1.06319 1.24371 0.87056 0.86548 0.70741 1.90627 1.17441 1.88374 1.47040 1.86510 1.41711 1.14834 1.83914 1.23218 0.93539 0.80703 1.03162 1.22051 0.97387 0.93170 0.97972 0.87706 1.22543 0.98089 0.89768 1.05329 1.24317 0.99305 1.00795 0.95662 1.87853 1.75870 1.08310 1.40469 1.24047 1.04272 0.92560 0.99650 0.93757 0.99406 0.99519 0.86706 0.86575 0.90331 0.91345 0.86886 0.89818 0.86111 0.87427 0.89507 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.74 13.65 21.45 0.29 -59.45 16 2 C -0.04 -2.45 5.46 84.65 0.46 -1.99 16 3 Si 1.12 49.34 29.90 68.60 2.05 51.39 16 4 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.62 -34.86 9.11 25.60 0.23 -34.63 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 9 C 0.02 1.17 3.57 29.85 0.11 1.28 16 10 C -0.09 -3.53 5.75 29.85 0.17 -3.36 16 11 C 0.47 17.58 7.96 71.24 0.57 18.15 16 12 O -0.54 -24.39 15.73 21.98 0.35 -24.04 16 13 O -0.35 -10.32 10.04 -51.36 -0.52 -10.84 16 14 C 0.07 1.57 4.74 71.98 0.34 1.91 16 15 C -0.09 -1.41 2.84 -10.07 -0.03 -1.43 16 16 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 17 C -0.12 -1.36 5.78 31.61 0.18 -1.18 16 18 C -0.05 -0.61 7.38 72.71 0.54 -0.07 16 19 S -0.35 -6.77 23.26 -56.49 -1.31 -8.09 16 20 C -0.06 -1.08 6.65 72.42 0.48 -0.60 16 21 H 0.25 16.63 7.22 -92.71 -0.67 15.96 16 22 H -0.01 -0.73 7.97 -2.39 -0.02 -0.74 16 23 H -0.01 -0.80 7.97 -2.39 -0.02 -0.81 16 24 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 25 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 26 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.07 1.64 8.00 -2.39 -0.02 1.62 16 28 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16 29 H 0.08 1.01 8.11 -2.39 -0.02 0.99 16 30 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.09 1.77 7.80 -2.39 -0.02 1.75 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -71.46 293.08 5.09 -66.37 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.18 Total: 6.59 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 3.05 Total: -21.93 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.29 Total: -59.45 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.17 Total: -34.88 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.05 Total: 51.39 kcal Atomic # 16 Polarization: -6.77 SS G_CDS: -1.31 Total: -8.09 kcal Total: -71.46 5.09 -66.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813076380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.773 kcal (2) G-P(sol) polarization free energy of solvation -71.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds