Wall clock time and date at job start Mon Mar 30 2020 03:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86802 * 119.99851 * 2 1 4 4 H 1.48494 * 109.47291 * 274.98600 * 3 2 1 5 5 H 1.48496 * 109.47192 * 34.99308 * 3 2 1 6 6 H 1.48507 * 109.47056 * 154.98939 * 3 2 1 7 7 C 1.40011 * 120.00422 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00674 * 186.28690 * 7 2 1 9 9 C 1.41461 * 119.99442 * 6.27871 * 7 2 1 10 10 C 1.40415 * 119.79244 * 173.92865 * 9 7 2 11 11 C 1.39020 * 118.87499 * 180.28920 * 10 9 7 12 12 N 1.39250 * 120.78171 * 179.76105 * 11 10 9 13 13 C 1.46503 * 119.99981 * 179.44501 * 12 11 10 14 14 C 1.50698 * 109.46614 * 180.27154 * 13 12 11 15 15 C 1.39871 * 125.89563 * 95.00569 * 14 13 12 16 16 C 1.35312 * 107.92164 * 179.97438 * 15 14 13 17 17 N 1.34950 * 107.74571 * 359.97438 * 16 15 14 18 18 H 0.96996 * 126.03396 * 179.97438 * 17 16 15 19 19 N 1.30837 * 125.90504 * 274.68763 * 14 13 12 20 20 C 1.39716 * 118.43521 * 359.48827 * 11 10 9 21 21 C 1.38449 * 119.47214 * 0.24847 * 20 11 10 22 22 N 1.31538 * 121.10552 * 0.02650 * 21 20 11 23 23 H 0.97002 * 120.00451 * 359.97438 * 1 2 3 24 24 H 1.07991 * 120.55839 * 0.02771 * 10 9 7 25 25 H 0.96997 * 119.99805 * 359.71897 * 12 11 10 26 26 H 1.08994 * 109.47363 * 300.27697 * 13 12 11 27 27 H 1.09003 * 109.46643 * 60.27905 * 13 12 11 28 28 H 1.07999 * 126.03907 * 0.02562 * 15 14 13 29 29 H 1.08001 * 126.12825 * 179.97438 * 16 15 14 30 30 H 1.07999 * 120.25893 * 180.22919 * 20 11 10 31 31 H 1.07994 * 119.44752 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3835 2.1073 -1.3947 5 1 1.4956 2.6199 0.8029 6 1 3.5878 1.4121 0.5920 7 6 2.0076 -1.2125 -0.0005 8 1 3.0827 -1.2154 0.1019 9 6 1.3066 -2.4338 -0.1351 10 6 2.0193 -3.6368 -0.2636 11 6 1.3112 -4.8253 -0.4007 12 7 1.9778 -6.0404 -0.5359 13 6 1.2144 -7.2839 -0.6672 14 6 2.1655 -8.4463 -0.7912 15 6 2.6073 -9.2599 0.2572 16 6 3.4471 -10.1863 -0.2601 17 7 3.5332 -9.9670 -1.5889 18 1 4.0650 -10.4787 -2.2184 19 7 2.7160 -8.8723 -1.8990 20 6 -0.0849 -4.7724 -0.3939 21 6 -0.7196 -3.5496 -0.2574 22 7 -0.0303 -2.4361 -0.1344 23 1 -0.4851 0.8400 0.0004 24 1 3.0992 -3.6382 -0.2602 25 1 2.9474 -6.0639 -0.5392 26 1 0.5872 -7.4200 0.2138 27 1 0.5859 -7.2322 -1.5562 28 1 2.3270 -9.1659 1.2959 29 1 3.9571 -10.9621 0.2916 30 1 -0.6643 -5.6783 -0.4947 31 1 -1.7988 -3.5092 -0.2526 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309520476.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:06 Heat of formation + Delta-G solvation = 88.505684 kcal Electronic energy + Delta-G solvation = -16084.242387 eV Core-core repulsion = 13366.171549 eV Total energy + Delta-G solvation = -2718.070839 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.13882 -40.07441 -37.12592 -35.20462 -33.18546 -31.79033 -30.93073 -30.40104 -27.86533 -26.70674 -23.50410 -22.63831 -22.26390 -20.80885 -19.40957 -19.05707 -17.55029 -17.03899 -16.47740 -15.93545 -15.58286 -15.46812 -15.00004 -14.59201 -14.42947 -14.35613 -14.00431 -13.77638 -13.27591 -12.83996 -12.81881 -12.56306 -12.08042 -11.78310 -11.59167 -11.37546 -10.92751 -10.58364 -9.71664 -9.49850 -9.38204 -8.35682 -8.21993 -6.46779 0.86399 1.00343 1.42006 1.42655 1.57353 1.61566 1.63939 1.98360 2.27222 2.90251 2.93459 3.60986 3.93415 4.07722 4.32809 4.36658 4.55385 4.70210 4.75207 4.82695 4.87877 5.06720 5.10074 5.25306 5.41232 5.57168 5.71228 5.75108 5.90196 6.33157 6.44987 6.62475 6.66325 6.82788 6.96684 7.11928 8.35145 8.54141 Molecular weight = 244.10amu Principal moments of inertia in cm(-1) A = 0.048163 B = 0.004280 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.220299 B = 6540.901511 C = 6938.224344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.026 3.974 3 Si 0.987 3.013 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.477 4.477 8 H 0.083 0.917 9 C 0.252 3.748 10 C -0.367 4.367 11 C 0.264 3.736 12 N -0.737 5.737 13 C 0.216 3.784 14 C 0.050 3.950 15 C -0.281 4.281 16 C 0.078 3.922 17 N -0.467 5.467 18 H 0.453 0.547 19 N -0.322 5.322 20 C -0.364 4.364 21 C 0.132 3.868 22 N -0.547 5.547 23 H 0.278 0.722 24 H 0.097 0.903 25 H 0.395 0.605 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.161 0.839 29 H 0.226 0.774 30 H 0.124 0.876 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.985 -17.029 0.426 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.190 1.190 6 H -0.180 1.180 7 C -0.508 4.508 8 H 0.101 0.899 9 C 0.128 3.872 10 C -0.394 4.394 11 C 0.156 3.844 12 N -0.369 5.369 13 C 0.090 3.910 14 C -0.115 4.115 15 C -0.311 4.311 16 C -0.070 4.070 17 N -0.178 5.178 18 H 0.300 0.700 19 N -0.147 5.147 20 C -0.392 4.392 21 C -0.033 4.033 22 N -0.262 5.262 23 H 0.088 0.912 24 H 0.115 0.885 25 H 0.229 0.771 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.178 0.822 29 H 0.243 0.757 30 H 0.142 0.858 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.340 -16.075 -0.738 16.955 hybrid contribution 1.184 -0.525 0.348 1.341 sum 6.524 -16.600 -0.390 17.840 Atomic orbital electron populations 1.70256 1.08854 1.28887 1.29912 1.26983 0.95717 1.04436 0.92411 0.85141 0.79074 0.75872 0.79201 1.18963 1.19004 1.17974 1.19926 0.94887 0.90789 1.45175 0.89928 1.18752 0.88689 0.92474 0.87319 1.21232 0.98325 0.92807 1.27081 1.17684 0.91816 0.85079 0.89846 1.44275 1.07623 1.02531 1.82489 1.19401 0.91030 0.78749 1.01830 1.22286 0.99226 0.98125 0.91913 1.21788 1.07426 1.00727 1.01112 1.23300 0.98637 1.00500 0.84544 1.46444 1.37438 1.25476 1.08393 0.70012 1.77288 1.10723 1.03008 1.23715 1.21127 0.92469 0.99150 1.26484 1.22763 0.99663 0.88653 0.92202 1.68699 1.07803 1.28096 1.21632 0.91172 0.88516 0.77126 0.89653 0.92204 0.82184 0.75747 0.85783 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -42.81 11.49 21.83 0.25 -42.56 16 2 C 0.03 1.39 5.49 85.28 0.47 1.86 16 3 Si 0.99 39.93 29.56 68.60 2.03 41.96 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.48 -27.53 9.14 23.49 0.21 -27.31 16 8 H 0.08 4.50 7.85 -2.91 -0.02 4.48 16 9 C 0.25 14.91 6.55 40.19 0.26 15.17 16 10 C -0.37 -19.39 9.72 22.99 0.22 -19.17 16 11 C 0.26 12.19 6.69 38.51 0.26 12.44 16 12 N -0.74 -27.11 5.71 -342.71 -1.96 -29.06 16 13 C 0.22 6.52 5.50 85.63 0.47 6.99 16 14 C 0.05 1.34 6.59 43.10 0.28 1.63 16 15 C -0.28 -5.69 10.74 21.99 0.24 -5.45 16 16 C 0.08 1.07 11.99 83.54 1.00 2.07 16 17 N -0.47 -7.92 7.36 -57.59 -0.42 -8.35 16 18 H 0.45 4.39 8.96 -213.34 -1.91 2.48 16 19 N -0.32 -8.71 12.70 -47.38 -0.60 -9.32 16 20 C -0.36 -16.60 9.40 22.68 0.21 -16.39 16 21 C 0.13 6.71 11.17 84.79 0.95 7.66 16 22 N -0.55 -32.27 7.89 -189.37 -1.49 -33.76 16 23 H 0.28 14.11 8.29 -92.71 -0.77 13.34 16 24 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 25 H 0.39 13.97 8.49 -92.71 -0.79 13.18 16 26 H 0.09 2.38 7.99 -2.39 -0.02 2.36 16 27 H 0.06 1.90 7.99 -2.39 -0.02 1.88 16 28 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 29 H 0.23 0.71 8.06 -2.91 -0.02 0.68 16 30 H 0.12 4.78 6.87 -2.91 -0.02 4.76 16 31 H 0.14 6.14 8.06 -2.91 -0.02 6.12 16 Total: -1.00 -73.94 277.67 0.86 -73.08 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: -1.52 Total: 28.50 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 4.58 Total: -20.49 kcal Atomic # 7 Polarization: -118.82 SS G_CDS: -4.23 Total: -123.05 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -73.94 0.86 -73.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309520476.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.585 kcal (2) G-P(sol) polarization free energy of solvation -73.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds