Wall clock time and date at job start Mon Mar 30 2020 03:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34952 * 126.12748 * 2 1 4 4 H 0.96994 * 126.03701 * 359.97438 * 3 2 1 5 5 N 1.40089 * 107.92250 * 180.24173 * 3 2 1 6 6 C 1.30835 * 108.20431 * 359.75879 * 5 3 2 7 7 C 1.35315 * 126.12772 * 179.83011 * 2 1 3 8 8 S 1.76203 * 126.03910 * 0.02562 * 7 2 1 9 9 O 1.42104 * 106.39881 * 48.26229 * 8 7 2 10 10 O 1.42093 * 106.40245 * 181.17845 * 8 7 2 11 11 N 1.65596 * 107.21914 * 294.72385 * 8 7 2 12 12 C 1.46494 * 120.00071 * 90.00051 * 11 8 7 13 13 C 1.36934 * 119.99963 * 269.99487 * 11 8 7 14 14 H 1.08010 * 119.99745 * 23.12897 * 13 11 8 15 15 C 1.38814 * 120.00501 * 203.13032 * 13 11 8 16 16 N 1.31623 * 119.99420 * 14.48781 * 15 13 11 17 17 Si 1.86795 * 120.00378 * 194.48827 * 15 13 11 18 18 H 1.48505 * 109.46885 * 89.99509 * 17 15 13 19 19 H 1.48489 * 109.47330 * 209.99935 * 17 15 13 20 20 H 1.48504 * 109.47063 * 330.00189 * 17 15 13 21 21 H 1.08998 * 109.47063 * 270.17761 * 1 2 3 22 22 H 1.09000 * 109.46698 * 30.17590 * 1 2 3 23 23 H 1.08997 * 109.46788 * 150.17366 * 1 2 3 24 24 H 1.08005 * 125.89314 * 180.02562 * 6 5 3 25 25 H 1.09000 * 109.47459 * 95.28277 * 12 11 8 26 26 H 1.09008 * 109.47301 * 215.28022 * 12 11 8 27 27 H 1.09000 * 109.47352 * 335.27724 * 12 11 8 28 28 H 0.97001 * 119.99468 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3027 1.0900 0.0000 4 1 2.0056 2.0133 -0.0004 5 7 3.6334 0.6524 -0.0056 6 6 3.6334 -0.6560 -0.0036 7 6 2.3048 -1.0929 0.0032 8 16 1.7652 -2.7703 0.0076 9 8 0.7788 -2.8770 -1.0097 10 8 2.9397 -3.5696 0.0382 11 7 0.9848 -3.0305 1.4448 12 6 -0.4572 -2.7941 1.5485 13 6 1.6874 -3.4667 2.5362 14 1 2.7515 -3.2926 2.5983 15 6 1.0320 -4.1327 3.5628 16 7 -0.1851 -4.5970 3.3743 17 14 1.8773 -4.3699 5.2116 18 1 1.5686 -3.2178 6.0963 19 1 1.3900 -5.6228 5.8420 20 1 3.3456 -4.4572 5.0070 21 1 -0.3633 0.0032 1.0276 22 1 -0.3633 0.8884 -0.5166 23 1 -0.3633 -0.8915 -0.5111 24 1 4.5084 -1.2892 -0.0064 25 1 -0.9913 -3.7314 1.3926 26 1 -0.6911 -2.4032 2.5388 27 1 -0.7624 -2.0717 0.7914 28 1 -0.6429 -5.0627 4.0916 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049637.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:44 Heat of formation + Delta-G solvation = 10.434210 kcal Electronic energy + Delta-G solvation = -16478.941224 eV Core-core repulsion = 13659.377146 eV Total energy + Delta-G solvation = -2819.564077 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 245.062 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.06373 -36.17997 -35.40299 -34.73100 -32.57595 -31.18458 -30.93960 -27.18605 -26.07370 -23.36756 -21.77650 -21.24822 -18.34006 -17.48613 -16.96625 -16.33453 -15.42514 -14.97654 -14.44033 -14.27333 -14.16886 -13.35652 -13.06888 -12.81342 -12.43428 -12.30122 -11.74146 -11.28266 -11.12820 -11.02383 -10.92852 -10.86711 -10.50311 -10.26811 -10.17112 -9.93783 -9.53452 -9.08740 -8.83316 -7.83492 -6.06867 -3.76999 1.54615 1.81332 2.61926 2.90281 3.27846 3.35022 3.39230 4.20235 4.53832 4.64112 4.82245 4.90951 5.03526 5.21534 5.43535 5.51016 5.81373 5.96428 6.07810 6.30672 6.61227 6.90717 7.22450 7.24943 7.56283 7.60798 7.74612 8.56681 9.11591 9.49107 10.97672 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.027603 B = 0.009599 C = 0.009090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.148716 B = 2916.162730 C = 3079.615564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.206 3.794 3 N -0.473 5.473 4 H 0.435 0.565 5 N -0.304 5.304 6 C 0.137 3.863 7 C -0.802 4.802 8 S 2.705 3.295 9 O -0.990 6.990 10 O -0.969 6.969 11 N -0.856 5.856 12 C 0.129 3.871 13 C -0.311 4.311 14 H 0.096 0.904 15 C 0.038 3.962 16 N -0.887 5.887 17 Si 0.913 3.087 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.270 1.270 21 H 0.101 0.899 22 H 0.081 0.919 23 H 0.114 0.886 24 H 0.197 0.803 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.027 0.973 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.505 9.792 -3.864 10.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.072 3.928 3 N -0.179 5.179 4 H 0.279 0.721 5 N -0.124 5.124 6 C -0.052 4.052 7 C -0.897 4.897 8 S 2.792 3.208 9 O -0.980 6.980 10 O -0.959 6.959 11 N -0.691 5.691 12 C -0.017 4.017 13 C -0.441 4.441 14 H 0.114 0.886 15 C -0.166 4.166 16 N -0.528 5.528 17 Si 0.741 3.259 18 H -0.209 1.209 19 H -0.211 1.211 20 H -0.195 1.195 21 H 0.119 0.881 22 H 0.100 0.900 23 H 0.132 0.868 24 H 0.213 0.787 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.269 10.217 -4.461 11.151 hybrid contribution -0.148 0.403 1.331 1.398 sum 0.120 10.620 -3.130 11.072 Atomic orbital electron populations 1.21205 0.86438 1.06057 1.05258 1.20874 0.94440 0.86368 0.91147 1.46695 1.04585 1.08245 1.58333 0.72066 1.77285 0.95819 1.13304 1.25980 1.23506 0.96372 0.91669 0.93635 1.32127 1.01007 1.25387 1.31134 1.01294 0.73248 0.73182 0.73063 1.93454 1.60489 1.86473 1.57600 1.93451 1.49957 1.65613 1.86877 1.52599 1.14432 1.77107 1.24964 1.21269 0.81102 0.99858 0.99491 1.19102 0.93479 1.35125 0.96364 0.88591 1.25095 0.96339 0.95637 0.99532 1.70076 1.13159 1.37080 1.32438 0.86146 0.79678 0.77472 0.82612 1.20852 1.21138 1.19509 0.88080 0.90039 0.86811 0.78653 0.92010 0.92321 0.95420 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.92 36.01 0.32 -1.33 15 2 C 0.21 3.24 7.21 -82.26 -0.59 2.64 15 3 N -0.47 -6.66 7.36 33.48 0.25 -6.41 15 4 H 0.44 4.24 8.96 -182.61 -1.64 2.60 15 5 N -0.30 -5.08 12.70 30.62 0.39 -4.70 15 6 C 0.14 2.44 11.70 -17.37 -0.20 2.24 15 7 C -0.80 -15.09 6.14 -40.02 -0.25 -15.34 15 8 S 2.71 60.15 5.41 -107.50 -0.58 59.56 15 9 O -0.99 -22.52 15.54 -57.17 -0.89 -23.41 15 10 O -0.97 -24.07 16.86 -57.17 -0.96 -25.04 15 11 N -0.86 -20.63 3.30 -66.69 -0.22 -20.85 15 12 C 0.13 2.84 8.52 59.84 0.51 3.35 15 13 C -0.31 -8.19 9.15 -15.06 -0.14 -8.33 15 14 H 0.10 2.50 7.69 -52.48 -0.40 2.10 15 15 C 0.04 1.00 5.07 -17.43 -0.09 0.92 15 16 N -0.89 -23.99 10.80 55.49 0.60 -23.39 15 17 Si 0.91 20.65 29.58 -169.99 -5.03 15.62 15 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 15 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 21 H 0.10 1.17 7.79 -51.93 -0.40 0.77 15 22 H 0.08 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.11 1.62 5.08 -51.93 -0.26 1.35 15 24 H 0.20 3.07 8.06 -52.48 -0.42 2.64 15 25 H 0.06 1.49 7.32 -51.93 -0.38 1.11 15 26 H 0.06 1.31 7.40 -51.92 -0.38 0.93 15 27 H 0.03 0.50 4.18 -51.93 -0.22 0.28 15 28 H 0.26 6.75 8.31 -40.82 -0.34 6.41 15 LS Contribution 252.52 15.07 3.81 3.81 Total: -1.00 -32.99 252.52 -6.75 -39.74 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -3.67 Total: 0.91 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -0.44 Total: -15.84 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 1.01 Total: -55.35 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -1.85 Total: -48.44 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Atomic # 16 Polarization: 60.15 SS G_CDS: -0.58 Total: 59.56 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.99 -6.75 -39.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049637.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.171 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds