Wall clock time and date at job start Mon Mar 30 2020 03:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31658 * 1 3 3 Si 1.86801 * 120.00315 * 2 1 4 4 H 1.48500 * 109.46649 * 269.99628 * 3 2 1 5 5 H 1.48504 * 109.47023 * 29.99325 * 3 2 1 6 6 H 1.48496 * 109.47529 * 149.99821 * 3 2 1 7 7 C 1.38639 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99832 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00107 * 180.02562 * 7 2 1 10 10 C 1.76201 * 99.99989 * 180.02562 * 9 7 2 11 11 N 1.30154 * 125.46452 * 180.02562 * 10 9 7 12 12 C 1.31579 * 116.99025 * 179.97438 * 11 10 9 13 13 C 1.50698 * 122.08165 * 179.97438 * 12 11 10 14 14 C 1.50710 * 109.47243 * 305.02697 * 13 12 11 15 15 O 1.20828 * 119.99655 * 359.97438 * 14 13 12 16 16 O 1.34226 * 120.00115 * 180.02562 * 14 13 12 17 17 C 1.33557 * 115.83491 * 0.02562 * 12 11 10 18 18 S 1.76165 * 125.46829 * 359.95602 * 10 9 7 19 19 H 0.97003 * 119.99641 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.46940 * 65.02172 * 13 12 11 21 21 H 1.08998 * 109.47514 * 185.02688 * 13 12 11 22 22 H 0.96694 * 117.00039 * 180.02562 * 16 14 13 23 23 H 1.08003 * 125.87726 * 180.02562 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3166 0.0000 0.0000 3 14 2.2507 1.6177 0.0000 4 1 2.4982 2.0462 -1.4001 5 1 1.4481 2.6527 0.6999 6 1 3.5482 1.4402 0.7000 7 6 2.0098 -1.2007 0.0005 8 1 1.4697 -2.1359 0.0005 9 16 3.7717 -1.2007 0.0012 10 6 4.0776 -2.9360 0.0009 11 7 5.2527 -3.4956 0.0018 12 6 5.2877 -4.8110 0.0019 13 6 6.5854 -5.5771 0.0022 14 6 7.4329 -5.1304 -1.1612 15 8 7.0246 -4.2777 -1.9137 16 8 8.6406 -5.6805 -1.3620 17 6 4.1015 -5.4247 0.0007 18 16 2.8421 -4.1917 0.0013 19 1 -0.4850 0.8401 -0.0004 20 1 7.1187 -5.3880 0.9339 21 1 6.3779 -6.6434 -0.0877 22 1 9.1476 -5.3614 -2.1211 23 1 3.9415 -6.4928 0.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070199638.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:36 Heat of formation + Delta-G solvation = -57.680674 kcal Electronic energy + Delta-G solvation = -12748.200285 eV Core-core repulsion = 10200.309550 eV Total energy + Delta-G solvation = -2547.890735 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 244.997 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.20548 -38.55719 -35.90743 -32.86970 -31.88398 -28.13359 -26.21024 -24.45220 -22.04240 -19.36124 -17.95070 -17.78571 -17.29721 -16.26212 -15.95418 -15.38230 -15.06100 -13.84118 -13.80832 -13.22969 -12.84168 -12.69675 -12.52513 -11.75154 -11.38424 -11.32369 -11.31979 -10.77057 -10.39029 -10.12777 -9.59173 -9.50221 -9.03200 -8.61462 -8.46889 -7.04067 -6.65735 -4.43431 1.28275 1.98362 2.36346 2.40576 2.54613 2.97069 3.07780 3.17861 3.21297 3.61416 3.96686 4.40152 4.70143 4.75431 5.11699 5.42254 5.52284 5.65014 6.10427 6.56867 6.63862 7.56444 8.04839 8.12968 8.36530 8.73248 10.41699 Molecular weight = 245.00amu Principal moments of inertia in cm(-1) A = 0.039888 B = 0.006622 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.802656 B = 4227.122281 C = 4782.980487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.108 3.892 3 Si 0.850 3.150 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.234 1.234 7 C -0.556 4.556 8 H 0.109 0.891 9 S 0.102 5.898 10 C 0.079 3.921 11 N -0.482 5.482 12 C 0.088 3.912 13 C -0.030 4.030 14 C 0.475 3.525 15 O -0.486 6.486 16 O -0.526 6.526 17 C -0.300 4.300 18 S 0.092 5.908 19 H 0.279 0.721 20 H 0.117 0.883 21 H 0.116 0.884 22 H 0.407 0.593 23 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.489 -9.092 0.334 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.105 4.105 3 Si 0.673 3.327 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.158 1.158 7 C -0.705 4.705 8 H 0.126 0.874 9 S 0.341 5.659 10 C -0.304 4.304 11 N -0.202 5.202 12 C -0.049 4.049 13 C -0.071 4.071 14 C 0.315 3.685 15 O -0.371 6.371 16 O -0.339 6.339 17 C -0.446 4.446 18 S 0.344 5.656 19 H 0.090 0.910 20 H 0.135 0.865 21 H 0.134 0.866 22 H 0.265 0.735 23 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 9.960 -7.460 0.461 12.453 hybrid contribution 0.306 -0.669 -0.563 0.927 sum 10.266 -8.129 -0.102 13.096 Atomic orbital electron populations 1.69924 1.05864 1.28648 1.43877 1.24675 0.94661 0.98926 0.92272 0.86851 0.81873 0.83274 0.80669 1.18307 1.18699 1.15835 1.22683 0.88072 0.98872 1.60850 0.87373 1.82925 1.09248 0.90555 1.83214 1.29858 0.91985 1.04790 1.03764 1.66360 1.23521 1.08732 1.21613 1.19237 0.93348 0.89106 1.03241 1.19739 0.90780 1.00350 0.96201 1.23274 0.79747 0.79256 0.86243 1.90802 1.71533 1.29254 1.45504 1.84508 1.31086 1.65482 1.52780 1.26353 0.95740 1.03821 1.18729 1.85274 1.11608 0.97154 1.71614 0.91041 0.86546 0.86631 0.73495 0.81758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.58 13.97 55.48 0.78 -22.81 14 2 C 0.11 2.88 5.50 -17.48 -0.10 2.78 14 3 Si 0.85 19.19 27.73 -169.99 -4.71 14.48 14 4 H -0.26 -5.77 7.11 56.52 0.40 -5.37 14 5 H -0.26 -5.69 7.11 56.52 0.40 -5.29 14 6 H -0.23 -5.12 6.73 56.52 0.38 -4.74 14 7 C -0.56 -14.94 9.80 30.88 0.30 -14.64 14 8 H 0.11 3.05 6.16 -52.49 -0.32 2.73 14 9 S 0.10 2.49 19.86 -107.50 -2.13 0.36 14 10 C 0.08 1.84 7.81 52.05 0.41 2.24 14 11 N -0.48 -10.53 9.67 -9.65 -0.09 -10.62 14 12 C 0.09 1.58 5.61 -84.34 -0.47 1.11 14 13 C -0.03 -0.39 6.28 -29.03 -0.18 -0.57 14 14 C 0.47 6.82 8.29 36.01 0.30 7.12 14 15 O -0.49 -9.34 16.18 -18.75 -0.30 -9.64 14 16 O -0.53 -5.49 13.42 -39.25 -0.53 -6.02 14 17 C -0.30 -5.12 11.01 29.09 0.32 -4.80 14 18 S 0.09 1.90 21.17 -107.50 -2.28 -0.38 14 19 H 0.28 7.10 8.31 -40.82 -0.34 6.76 14 20 H 0.12 1.28 8.14 -51.93 -0.42 0.85 14 21 H 0.12 1.06 8.01 -51.93 -0.42 0.64 14 22 H 0.41 2.66 9.10 45.56 0.41 3.07 14 23 H 0.16 2.14 8.06 -52.48 -0.42 1.72 14 LS Contribution 245.04 15.07 3.69 3.69 Total: -1.00 -31.99 245.04 -5.33 -37.33 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -0.33 Total: 0.38 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 0.58 Total: -6.76 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.68 Total: -33.43 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.83 Total: -15.66 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.48 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -4.41 Total: -0.02 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.99 -5.33 -37.33 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070199638.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.356 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds