Wall clock time and date at job start Mon Mar 30 2020 03:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30844 * 1 3 3 Si 1.86797 * 120.00187 * 2 1 4 4 H 1.48502 * 109.47026 * 89.99581 * 3 2 1 5 5 H 1.48500 * 109.47334 * 209.99654 * 3 2 1 6 6 H 1.48499 * 109.47068 * 329.99403 * 3 2 1 7 7 C 1.39942 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99776 * 17.87968 * 7 2 1 9 9 C 1.41285 * 120.00074 * 197.87929 * 7 2 1 10 10 C 1.40725 * 120.26795 * 28.51107 * 9 7 2 11 11 C 1.36541 * 119.89747 * 179.79028 * 10 9 7 12 12 C 1.38714 * 120.45458 * 0.47034 * 11 10 9 13 13 S 1.76202 * 119.73263 * 179.75874 * 12 11 10 14 14 N 1.65595 * 107.22169 * 270.02439 * 13 12 11 15 15 O 1.42096 * 106.40006 * 23.56902 * 13 12 11 16 16 O 1.42103 * 106.40138 * 156.48156 * 13 12 11 17 17 C 1.38490 * 120.54060 * 359.78682 * 12 11 10 18 18 C 1.38020 * 120.08696 * 359.97403 * 17 12 11 19 19 F 1.35109 * 120.22196 * 179.97438 * 18 17 12 20 20 H 0.97001 * 120.00021 * 175.44750 * 1 2 3 21 21 H 1.08003 * 120.04920 * 0.02562 * 10 9 7 22 22 H 1.07999 * 119.77665 * 180.21113 * 11 10 9 23 23 H 0.97003 * 120.00167 * 149.99869 * 14 13 12 24 24 H 0.97002 * 120.00067 * 330.00239 * 14 13 12 25 25 H 1.08001 * 119.95715 * 180.02562 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4899 2.0464 1.4001 5 1 3.5401 1.4401 -0.7000 6 1 1.4400 2.6526 -0.7002 7 6 2.0081 -1.2120 0.0005 8 1 1.5071 -2.1248 -0.2862 9 6 3.3698 -1.2414 0.3762 10 6 3.8769 -0.2898 1.2805 11 6 5.1931 -0.3279 1.6416 12 6 6.0388 -1.2935 1.1156 13 16 7.7356 -1.3211 1.5900 14 7 8.5597 -0.3643 0.5189 15 8 7.8105 -0.6693 2.8504 16 8 8.1910 -2.6498 1.3739 17 6 5.5606 -2.2356 0.2203 18 6 4.2329 -2.2208 -0.1564 19 9 3.7636 -3.1383 -1.0301 20 1 -0.4850 -0.8374 -0.0667 21 1 3.2250 0.4671 1.6911 22 1 5.5794 0.4013 2.3383 23 1 9.3584 0.1066 0.8041 24 1 8.2438 -0.2745 -0.3939 25 1 6.2273 -2.9834 -0.1831 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070601947.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:38 Heat of formation + Delta-G solvation = -143.754423 kcal Electronic energy + Delta-G solvation = -15516.541147 eV Core-core repulsion = 12534.537892 eV Total energy + Delta-G solvation = -2982.003254 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 245.031 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.46497 -39.61609 -38.05080 -36.74995 -36.07358 -33.89955 -32.68167 -31.37559 -27.39831 -24.02565 -22.85691 -20.69352 -20.27364 -19.34751 -18.19791 -17.54560 -17.36169 -16.83425 -16.38692 -16.21226 -15.99349 -15.70519 -15.15266 -14.64230 -13.99446 -13.43583 -13.25176 -13.08580 -13.05121 -12.98227 -12.72272 -12.49498 -12.09432 -11.72756 -11.58571 -11.20092 -11.01729 -10.18734 -9.73746 -9.59124 -7.00376 -0.31407 0.09261 0.52773 1.31540 1.47358 1.72578 2.03792 2.18599 2.51666 2.83538 3.10252 3.57846 3.82941 4.07060 4.21107 4.54743 4.75173 4.94434 5.12437 5.21255 5.30518 5.39877 5.52101 5.67654 5.98676 6.24873 6.40062 6.49979 7.64040 Molecular weight = 245.03amu Principal moments of inertia in cm(-1) A = 0.033585 B = 0.008413 C = 0.007265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.509904 B = 3327.246339 C = 3853.098474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.015 3.985 3 Si 1.096 2.904 4 H -0.241 1.241 5 H -0.252 1.252 6 H -0.272 1.272 7 C -0.503 4.503 8 H 0.057 0.943 9 C 0.082 3.918 10 C -0.254 4.254 11 C 0.015 3.985 12 C -0.774 4.774 13 S 2.746 3.254 14 N -1.234 6.234 15 O -1.000 7.000 16 O -1.007 7.007 17 C -0.014 4.014 18 C -0.064 4.064 19 F -0.165 7.165 20 H 0.287 0.713 21 H 0.130 0.870 22 H 0.152 0.848 23 H 0.428 0.572 24 H 0.427 0.573 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.389 4.730 -0.376 12.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.204 4.204 3 Si 0.913 3.087 4 H -0.166 1.166 5 H -0.175 1.175 6 H -0.199 1.199 7 C -0.530 4.530 8 H 0.075 0.925 9 C 0.077 3.923 10 C -0.274 4.274 11 C -0.004 4.004 12 C -0.865 4.865 13 S 2.836 3.164 14 N -0.912 5.912 15 O -0.990 6.990 16 O -0.997 6.997 17 C -0.035 4.035 18 C -0.085 4.085 19 F -0.144 7.144 20 H 0.099 0.901 21 H 0.148 0.852 22 H 0.169 0.831 23 H 0.260 0.740 24 H 0.257 0.743 25 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.298 5.675 0.482 12.652 hybrid contribution -1.246 -2.172 -1.070 2.723 sum 10.051 3.503 -0.588 10.660 Atomic orbital electron populations 1.70589 1.08567 1.33496 1.29147 1.28731 0.95694 1.07044 0.88975 0.83393 0.75271 0.69686 0.80323 1.16576 1.17543 1.19851 1.20931 0.95774 0.97216 1.39091 0.92462 1.18178 0.92718 0.91355 0.90011 1.20993 0.97434 1.04643 1.04307 1.20451 0.92450 0.94045 0.93481 1.29678 1.24297 1.11412 1.21090 0.99773 0.72110 0.72447 0.72100 1.52793 1.42540 1.68951 1.26940 1.93498 1.87148 1.76295 1.42011 1.93517 1.80744 1.39303 1.86101 1.20530 0.93355 0.96043 0.93525 1.18124 0.93683 0.96618 1.00031 1.91293 1.89654 1.65420 1.68065 0.90134 0.85247 0.83062 0.73966 0.74322 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.93 13.66 21.83 0.30 -39.63 15 2 C 0.01 0.71 5.42 85.25 0.46 1.17 15 3 Si 1.10 42.08 24.90 68.60 1.71 43.78 15 4 H -0.24 -8.20 6.43 99.48 0.64 -7.57 15 5 H -0.25 -9.32 7.03 99.48 0.70 -8.62 15 6 H -0.27 -9.98 7.11 99.48 0.71 -9.27 15 7 C -0.50 -26.25 9.14 23.43 0.21 -26.04 15 8 H 0.06 3.23 7.96 -2.91 -0.02 3.21 15 9 C 0.08 3.97 5.15 -21.25 -0.11 3.87 15 10 C -0.25 -10.84 7.23 22.48 0.16 -10.67 15 11 C 0.02 0.56 9.44 21.99 0.21 0.77 15 12 C -0.77 -27.67 5.99 22.44 0.13 -27.53 15 13 S 2.75 79.93 6.27 -56.49 -0.35 79.57 15 14 N -1.23 -22.94 9.52 37.02 0.35 -22.59 15 15 O -1.00 -33.40 17.26 -128.00 -2.21 -35.61 15 16 O -1.01 -35.28 17.26 -128.00 -2.21 -37.49 15 17 C -0.01 -0.56 9.48 22.28 0.21 -0.35 15 18 C -0.06 -3.00 7.31 22.89 0.17 -2.83 15 19 F -0.17 -8.01 16.77 44.97 0.75 -7.26 15 20 H 0.29 14.27 8.73 -92.71 -0.81 13.46 15 21 H 0.13 5.20 4.37 -2.91 -0.01 5.19 15 22 H 0.15 4.64 7.59 -2.91 -0.02 4.62 15 23 H 0.43 5.69 8.96 -96.74 -0.87 4.83 15 24 H 0.43 6.43 8.96 -96.74 -0.87 5.56 15 25 H 0.14 5.07 7.60 -2.91 -0.02 5.05 15 Total: -1.00 -63.60 239.54 -0.79 -64.39 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -0.58 Total: 16.45 kcal Atomic # 6 Polarization: -63.08 SS G_CDS: 1.45 Total: -61.63 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 0.65 Total: -62.22 kcal Atomic # 8 Polarization: -68.68 SS G_CDS: -4.42 Total: -73.10 kcal Atomic # 9 Polarization: -8.01 SS G_CDS: 0.75 Total: -7.26 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.71 Total: 43.78 kcal Atomic # 16 Polarization: 79.93 SS G_CDS: -0.35 Total: 79.57 kcal Total: -63.60 -0.79 -64.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070601947.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.364 kcal (2) G-P(sol) polarization free energy of solvation -63.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds