Wall clock time and date at job start Mon Mar 30 2020 03:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00430 * 2 1 4 4 H 1.48501 * 109.47245 * 240.00163 * 3 2 1 5 5 H 1.48503 * 109.46860 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47416 * 119.99904 * 3 2 1 7 7 C 1.37887 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99549 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99717 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47623 * 60.00037 * 9 7 2 11 11 N 1.46901 * 109.47195 * 299.99648 * 9 7 2 12 12 C 1.50712 * 109.46728 * 180.02562 * 9 7 2 13 13 C 1.34500 * 125.77654 * 260.32587 * 12 9 7 14 14 C 1.41395 * 106.84702 * 180.14064 * 13 12 9 15 15 C 1.34626 * 106.83185 * 359.60034 * 14 13 12 16 16 Br 1.89098 * 125.79674 * 180.21941 * 15 14 13 17 17 O 1.34309 * 108.40372 * 0.24634 * 15 14 13 18 18 H 0.97004 * 119.99536 * 359.97438 * 1 2 3 19 19 H 1.00903 * 110.99985 * 176.05095 * 11 9 7 20 20 H 1.00903 * 111.00076 * 300.00581 * 11 9 7 21 21 H 1.07997 * 126.57807 * 0.02562 * 13 12 9 22 22 H 1.08002 * 126.58661 * 179.87383 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6239 -2.5567 -0.8903 11 7 0.4069 -2.5772 1.1993 12 6 2.2303 -3.6447 -0.0005 13 6 2.6019 -4.3615 -1.0762 14 6 3.5271 -5.3302 -0.6235 15 6 3.6723 -5.1413 0.7015 16 35 4.7944 -6.1452 1.8455 17 8 2.8843 -4.1190 1.0729 18 1 -0.4850 0.8401 0.0004 19 1 -0.1571 -3.4138 1.1908 20 1 0.9653 -2.5259 2.0382 21 1 2.2580 -4.2248 -2.0908 22 1 4.0253 -6.0754 -1.2258 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084395621.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:26 Heat of formation + Delta-G solvation = 19.351646 kcal Electronic energy + Delta-G solvation = -10631.902769 eV Core-core repulsion = 8428.128143 eV Total energy + Delta-G solvation = -2203.774626 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 244.979 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.01081 -34.71011 -32.65198 -31.80343 -31.17517 -27.93516 -25.81389 -22.27245 -21.32056 -19.65571 -16.81283 -16.44805 -15.43353 -14.73137 -14.25719 -13.84738 -12.70146 -12.53502 -12.36318 -12.17615 -11.41140 -11.10099 -10.86424 -10.79171 -10.43662 -10.07278 -9.53537 -9.30972 -8.53861 -7.80350 -7.31580 -6.00036 -4.16728 1.24849 2.08506 3.10040 3.31682 3.35975 3.39975 3.98509 4.41525 5.25428 5.39102 5.59986 6.07627 6.14183 6.31051 6.49393 6.89365 7.07760 7.60790 7.78730 7.96016 8.45686 8.84489 8.96181 9.52545 11.04071 Molecular weight = 244.98amu Principal moments of inertia in cm(-1) A = 0.047167 B = 0.006672 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.495468 B = 4195.447859 C = 4375.555530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.086 3.914 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.057 0.943 9 C 0.293 3.707 10 H 0.075 0.925 11 N -0.808 5.808 12 C 0.043 3.957 13 C -0.248 4.248 14 C -0.148 4.148 15 C -0.068 4.068 16 Br 0.022 6.978 17 O -0.159 6.159 18 H 0.260 0.740 19 H 0.303 0.697 20 H 0.326 0.674 21 H 0.150 0.850 22 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.288 -11.924 1.723 14.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.121 4.121 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.075 0.925 9 C 0.182 3.818 10 H 0.092 0.908 11 N -0.333 5.333 12 C -0.013 4.013 13 C -0.269 4.269 14 C -0.170 4.170 15 C -0.195 4.195 16 Br 0.106 6.894 17 O -0.056 6.056 18 H 0.070 0.930 19 H 0.113 0.887 20 H 0.138 0.862 21 H 0.167 0.833 22 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.138 -11.380 2.195 13.612 hybrid contribution 0.960 0.080 -0.198 0.984 sum 8.099 -11.300 1.997 14.045 Atomic orbital electron populations 1.70076 1.05719 1.26349 1.45764 1.24917 0.94736 0.98730 0.93767 0.86682 0.79673 0.82968 0.78736 1.20173 1.21121 1.20172 1.20735 0.92475 0.89008 1.55710 0.92518 1.18268 0.85200 0.85966 0.92321 0.90763 1.59050 1.27794 1.42003 1.04441 1.25779 0.95221 0.96951 0.83317 1.21575 1.04707 1.00078 1.00509 1.21595 1.01350 1.01678 0.92353 1.23505 1.04167 0.97978 0.93833 1.96676 1.60421 1.66154 1.66151 1.84092 1.45467 1.38782 1.37234 0.93017 0.88696 0.86155 0.83268 0.83453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.90 12.77 55.43 0.71 -23.20 14 2 C 0.09 2.36 5.39 -17.82 -0.10 2.26 14 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 14 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 14 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 14 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 14 7 C -0.54 -14.71 8.71 -34.44 -0.30 -15.01 14 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 14 9 C 0.29 7.15 3.07 -70.01 -0.21 6.94 14 10 H 0.07 1.90 8.13 -51.93 -0.42 1.48 14 11 N -0.81 -18.85 8.52 -6.65 -0.06 -18.91 14 12 C 0.04 0.94 6.07 -35.62 -0.22 0.72 14 13 C -0.25 -4.80 10.80 -39.70 -0.43 -5.23 14 14 C -0.15 -2.55 10.86 -39.66 -0.43 -2.98 14 15 C -0.07 -1.23 7.80 29.45 0.23 -1.00 14 16 Br 0.02 0.32 34.09 -68.01 -2.32 -2.00 14 17 O -0.16 -3.38 10.53 5.56 0.06 -3.33 14 18 H 0.26 7.03 8.31 -40.82 -0.34 6.69 14 19 H 0.30 6.25 9.06 -39.29 -0.36 5.89 14 20 H 0.33 7.52 8.88 -39.29 -0.35 7.17 14 21 H 0.15 2.61 8.06 -52.49 -0.42 2.18 14 22 H 0.15 2.07 8.06 -52.49 -0.42 1.64 14 LS Contribution 227.72 15.07 3.43 3.43 Total: -1.00 -28.28 227.72 -6.17 -34.45 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -1.51 Total: 7.80 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -1.46 Total: -14.30 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.65 Total: -42.10 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: 0.06 Total: -3.33 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 35 Polarization: 0.32 SS G_CDS: -2.32 Total: -2.00 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.28 -6.17 -34.45 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084395621.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.801 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds