Wall clock time and date at job start Mon Mar 30 2020 03:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00430 * 2 1 4 4 H 1.48501 * 109.47245 * 240.00163 * 3 2 1 5 5 H 1.48503 * 109.46860 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47416 * 119.99904 * 3 2 1 7 7 C 1.37887 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99549 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99717 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47623 * 60.00037 * 9 7 2 11 11 N 1.46901 * 109.47195 * 299.99648 * 9 7 2 12 12 C 1.50712 * 109.46728 * 180.02562 * 9 7 2 13 13 C 1.34500 * 125.77654 * 260.32587 * 12 9 7 14 14 C 1.41395 * 106.84702 * 180.14064 * 13 12 9 15 15 C 1.34626 * 106.83185 * 359.60034 * 14 13 12 16 16 Br 1.89098 * 125.79674 * 180.21941 * 15 14 13 17 17 O 1.34309 * 108.40372 * 0.24634 * 15 14 13 18 18 H 0.97004 * 119.99536 * 359.97438 * 1 2 3 19 19 H 1.00903 * 110.99985 * 176.05095 * 11 9 7 20 20 H 1.00903 * 111.00076 * 300.00581 * 11 9 7 21 21 H 1.07997 * 126.57807 * 0.02562 * 13 12 9 22 22 H 1.08002 * 126.58661 * 179.87383 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6239 -2.5567 -0.8903 11 7 0.4069 -2.5772 1.1993 12 6 2.2303 -3.6447 -0.0005 13 6 2.6019 -4.3615 -1.0762 14 6 3.5271 -5.3302 -0.6235 15 6 3.6723 -5.1413 0.7015 16 35 4.7944 -6.1452 1.8455 17 8 2.8843 -4.1190 1.0729 18 1 -0.4850 0.8401 0.0004 19 1 -0.1571 -3.4138 1.1908 20 1 0.9653 -2.5259 2.0382 21 1 2.2580 -4.2248 -2.0908 22 1 4.0253 -6.0754 -1.2258 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084395621.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:26 Heat of formation + Delta-G solvation = 0.150066 kcal Electronic energy + Delta-G solvation = -10632.735412 eV Core-core repulsion = 8428.128143 eV Total energy + Delta-G solvation = -2204.607269 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 244.979 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -43.53243 -36.59723 -34.12721 -33.67896 -32.68014 -29.54430 -27.75938 -24.09326 -22.81276 -21.23465 -18.72156 -18.08578 -17.05045 -16.61784 -16.13227 -15.49065 -14.51548 -14.00550 -13.90638 -13.79356 -13.30146 -12.77406 -12.70233 -12.31432 -12.05167 -11.65087 -11.44400 -10.84808 -10.61264 -9.39101 -9.08207 -8.06251 -6.29682 -0.10811 0.59133 1.44001 1.45087 1.52185 1.61574 2.41324 2.47731 3.18698 4.02424 4.07642 4.31805 4.60824 4.87031 4.95332 5.10516 5.49666 5.67110 5.93575 6.07289 6.51505 6.91622 7.10404 7.42928 8.96838 Molecular weight = 244.98amu Principal moments of inertia in cm(-1) A = 0.047167 B = 0.006672 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.495468 B = 4195.447859 C = 4375.555530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.042 3.958 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.557 4.557 8 H 0.044 0.956 9 C 0.297 3.703 10 H 0.054 0.946 11 N -0.816 5.816 12 C 0.008 3.992 13 C -0.241 4.241 14 C -0.142 4.142 15 C -0.078 4.078 16 Br 0.061 6.939 17 O -0.178 6.178 18 H 0.261 0.739 19 H 0.317 0.683 20 H 0.326 0.674 21 H 0.164 0.836 22 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.509 -12.662 1.602 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.163 4.163 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.595 4.595 8 H 0.063 0.937 9 C 0.186 3.814 10 H 0.072 0.928 11 N -0.342 5.342 12 C -0.047 4.047 13 C -0.261 4.261 14 C -0.163 4.163 15 C -0.205 4.205 16 Br 0.144 6.856 17 O -0.076 6.076 18 H 0.070 0.930 19 H 0.128 0.872 20 H 0.138 0.862 21 H 0.181 0.819 22 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 8.362 -12.130 2.065 14.877 hybrid contribution 0.654 0.172 -0.126 0.688 sum 9.016 -11.957 1.939 15.101 Atomic orbital electron populations 1.70178 1.06911 1.27075 1.46692 1.25621 0.95518 1.01746 0.93421 0.85731 0.78526 0.79289 0.78681 1.19566 1.20443 1.20191 1.20995 0.92120 0.90777 1.55646 0.93750 1.17836 0.85537 0.86272 0.91744 0.92793 1.58907 1.28065 1.43108 1.04108 1.25173 0.96927 0.98008 0.84558 1.21884 1.04098 0.99593 1.00509 1.21976 1.00504 1.01579 0.92275 1.24230 1.03659 0.97169 0.95407 1.96711 1.58878 1.64714 1.65253 1.84037 1.46223 1.39944 1.37363 0.93002 0.87180 0.86215 0.81876 0.79808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.84 12.77 21.45 0.27 -49.57 14 2 C 0.04 2.30 5.39 84.66 0.46 2.76 14 3 Si 0.95 43.27 29.54 68.60 2.03 45.29 14 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 14 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 14 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 14 7 C -0.56 -30.68 8.71 25.60 0.22 -30.46 14 8 H 0.04 2.49 7.74 -2.91 -0.02 2.46 14 9 C 0.30 14.74 3.07 43.42 0.13 14.87 14 10 H 0.05 2.85 8.13 -2.39 -0.02 2.83 14 11 N -0.82 -38.64 8.52 -174.94 -1.49 -40.13 14 12 C 0.01 0.37 6.07 24.83 0.15 0.52 14 13 C -0.24 -8.98 10.80 22.19 0.24 -8.74 14 14 C -0.14 -4.53 10.86 22.22 0.24 -4.29 14 15 C -0.08 -2.70 7.80 66.99 0.52 -2.17 14 16 Br 0.06 1.60 34.09 -20.37 -0.69 0.90 14 17 O -0.18 -7.47 10.53 -3.01 -0.03 -7.50 14 18 H 0.26 14.17 8.31 -92.71 -0.77 13.40 14 19 H 0.32 13.24 9.06 -89.69 -0.81 12.42 14 20 H 0.33 15.26 8.88 -89.69 -0.80 14.47 14 21 H 0.16 5.47 8.06 -2.91 -0.02 5.45 14 22 H 0.18 4.40 8.06 -2.91 -0.02 4.38 14 Total: -1.00 -59.39 227.72 1.70 -57.68 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -0.35 Total: 20.83 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 1.97 Total: -27.51 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -1.22 Total: -89.70 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.03 Total: -7.50 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 35 Polarization: 1.60 SS G_CDS: -0.69 Total: 0.90 kcal Total: -59.39 1.70 -57.68 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084395621.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.834 kcal (2) G-P(sol) polarization free energy of solvation -59.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds