Wall clock time and date at job start Mon Mar 30 2020 03:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00118 * 2 1 4 4 H 1.48494 * 109.47243 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47063 * 299.99923 * 3 2 1 6 6 H 1.48504 * 109.47411 * 59.99883 * 3 2 1 7 7 C 1.37876 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00348 * 180.02562 * 7 2 1 9 9 S 1.76207 * 119.99777 * 359.97438 * 7 2 1 10 10 O 1.42094 * 103.00143 * 286.87380 * 9 7 2 11 11 C 1.76199 * 102.99847 * 180.02562 * 9 7 2 12 12 C 1.38125 * 120.02694 * 95.02227 * 11 9 7 13 13 C 1.38245 * 120.09170 * 179.97438 * 12 11 9 14 14 C 1.38430 * 120.13183 * 0.02562 * 13 12 11 15 15 Cl 1.73599 * 119.97439 * 179.97438 * 14 13 12 16 16 C 1.38197 * 120.04983 * 359.97438 * 14 13 12 17 17 C 1.38905 * 120.02126 * 275.00389 * 11 9 7 18 18 N 1.39670 * 120.07133 * 359.74488 * 17 11 9 19 19 H 0.97004 * 119.99925 * 359.97438 * 1 2 3 20 20 H 1.08002 * 119.95752 * 0.02562 * 12 11 9 21 21 H 1.08001 * 119.93206 * 180.02562 * 13 12 11 22 22 H 1.07997 * 120.03977 * 179.97438 * 16 14 13 23 23 H 0.97004 * 119.99876 * 359.97438 * 18 17 11 24 24 H 0.96999 * 120.00054 * 180.02562 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0019 10 8 0.6161 -2.7950 1.3270 11 6 2.4121 -3.9217 0.0030 12 6 2.8462 -4.4686 1.1947 13 6 3.8568 -5.4119 1.1971 14 6 4.4375 -5.8112 0.0056 15 17 5.7067 -6.9956 0.0134 16 6 4.0075 -5.2677 -1.1901 17 6 2.9919 -4.3200 -1.1948 18 7 2.5510 -3.7728 -2.4018 19 1 -0.4850 0.8401 0.0004 20 1 2.3950 -4.1595 2.1260 21 1 4.1940 -5.8381 2.1304 22 1 4.4609 -5.5791 -2.1195 23 1 1.8389 -3.1142 -2.4043 24 1 2.9564 -4.0520 -3.2377 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088063184.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:17 Heat of formation + Delta-G solvation = -37.937796 kcal Electronic energy + Delta-G solvation = -13172.708908 eV Core-core repulsion = 10623.630582 eV Total energy + Delta-G solvation = -2549.078326 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 245.002 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.79010 -36.29175 -34.28741 -33.47118 -32.86417 -30.17956 -28.14196 -25.82992 -22.45156 -21.73791 -18.18649 -17.19320 -16.61061 -15.99301 -15.32574 -14.65744 -13.98346 -13.82121 -13.56393 -13.26552 -13.02508 -11.95745 -11.75035 -11.55655 -11.27907 -11.22869 -10.80807 -10.72340 -10.51408 -10.29980 -10.03014 -9.11021 -8.55397 -8.38012 -7.28674 -7.04652 -6.37844 -4.87921 1.55812 2.01451 2.38094 3.07155 3.16704 3.22047 3.67757 4.10132 4.21641 4.32136 4.77007 5.28728 5.43159 5.53458 5.74254 6.02603 6.14636 6.34783 6.42041 6.72439 6.98092 7.19326 7.44800 7.82312 8.15093 8.20367 9.04460 10.40595 Molecular weight = 245.00amu Principal moments of inertia in cm(-1) A = 0.036294 B = 0.006826 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.284019 B = 4101.078388 C = 4219.413234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.120 3.880 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.819 4.819 8 H 0.080 0.920 9 S 1.404 4.596 10 O -0.909 6.909 11 C -0.512 4.512 12 C -0.002 4.002 13 C -0.192 4.192 14 C 0.026 3.974 15 Cl -0.091 7.091 16 C -0.215 4.215 17 C 0.290 3.710 18 N -0.866 5.866 19 H 0.281 0.719 20 H 0.133 0.867 21 H 0.121 0.879 22 H 0.125 0.875 23 H 0.408 0.592 24 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.003 -7.863 -7.225 11.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.093 4.093 3 Si 0.732 3.268 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.959 4.959 8 H 0.099 0.901 9 S 1.601 4.399 10 O -0.904 6.904 11 C -0.608 4.608 12 C -0.021 4.021 13 C -0.214 4.214 14 C -0.002 4.002 15 Cl -0.063 7.063 16 C -0.239 4.239 17 C 0.181 3.819 18 N -0.405 5.405 19 H 0.091 0.909 20 H 0.151 0.849 21 H 0.139 0.861 22 H 0.143 0.857 23 H 0.239 0.761 24 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.988 -8.092 -7.177 11.528 hybrid contribution 2.220 1.262 1.466 2.944 sum 6.208 -6.830 -5.711 10.854 Atomic orbital electron populations 1.69850 1.06411 1.29405 1.44269 1.24750 0.94512 0.99886 0.90125 0.86347 0.80590 0.81661 0.78237 1.19169 1.19881 1.20254 1.27534 1.02206 1.05546 1.60633 0.90128 1.67480 0.83627 0.82738 1.06085 1.92824 1.71414 1.85689 1.40426 1.28733 1.19710 1.18190 0.94129 1.20863 0.91724 0.91375 0.98182 1.20828 1.01212 1.03126 0.96208 1.20563 0.91546 0.93023 0.95040 1.98324 1.51612 1.57336 1.99002 1.20316 1.02979 1.03720 0.96878 1.17010 0.89800 0.89003 0.86072 1.42589 1.43952 1.48987 1.05000 0.90877 0.84911 0.86146 0.85704 0.76114 0.77536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.42 13.19 55.43 0.73 -22.69 14 2 C 0.12 3.17 5.46 -17.82 -0.10 3.07 14 3 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 14 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 14 5 H -0.27 -5.76 7.11 56.52 0.40 -5.36 14 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 14 7 C -0.82 -21.66 9.34 30.60 0.29 -21.37 14 8 H 0.08 2.16 7.81 -52.49 -0.41 1.75 14 9 S 1.40 33.08 11.90 -107.50 -1.28 31.80 14 10 O -0.91 -26.91 16.38 -35.23 -0.58 -27.49 14 11 C -0.51 -10.74 5.62 -39.38 -0.22 -10.96 14 12 C 0.00 -0.03 9.45 -39.62 -0.37 -0.41 14 13 C -0.19 -3.50 9.83 -39.51 -0.39 -3.89 14 14 C 0.03 0.43 6.32 -39.53 -0.25 0.18 14 15 Cl -0.09 -1.31 28.95 -51.86 -1.50 -2.81 14 16 C -0.21 -3.46 9.68 -39.35 -0.38 -3.84 14 17 C 0.29 5.02 6.74 -83.79 -0.56 4.46 14 18 N -0.87 -11.67 9.02 32.41 0.29 -11.38 14 19 H 0.28 7.00 8.31 -40.82 -0.34 6.66 14 20 H 0.13 3.03 7.22 -52.49 -0.38 2.65 14 21 H 0.12 1.95 8.06 -52.49 -0.42 1.53 14 22 H 0.13 1.66 8.06 -52.49 -0.42 1.23 14 23 H 0.41 5.41 7.34 -40.82 -0.30 5.11 14 24 H 0.40 3.91 8.84 -40.82 -0.36 3.55 14 LS Contribution 248.39 15.07 3.74 3.74 Total: -1.00 -33.61 248.39 -7.03 -40.65 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -1.43 Total: 5.60 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: -1.99 Total: -32.76 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 1.02 Total: -34.06 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.58 Total: -27.49 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 33.08 SS G_CDS: -1.28 Total: 31.80 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.50 Total: -2.81 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.61 -7.03 -40.65 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088063184.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.708 kcal (2) G-P(sol) polarization free energy of solvation -33.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds