Wall clock time and date at job start Mon Mar 30 2020 03:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99821 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00341 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99962 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99608 * 180.27726 * 7 2 1 9 9 S 1.76199 * 120.00184 * 0.02562 * 7 2 1 10 10 O 1.42096 * 106.40327 * 293.53679 * 9 7 2 11 11 O 1.42099 * 106.40136 * 66.46077 * 9 7 2 12 12 C 1.76206 * 107.21647 * 179.97438 * 9 7 2 13 13 C 1.38135 * 120.01067 * 114.72842 * 12 9 7 14 14 C 1.38228 * 120.09898 * 179.72345 * 13 12 9 15 15 C 1.38543 * 120.12006 * 0.54799 * 14 13 12 16 16 F 1.35096 * 119.98267 * 179.75146 * 15 14 13 17 17 C 1.38302 * 120.02352 * 359.72307 * 15 14 13 18 18 C 1.38883 * 119.90152 * 0.02562 * 17 15 14 19 19 N 1.39672 * 120.06294 * 180.02562 * 18 17 15 20 20 H 0.97005 * 120.00032 * 359.97438 * 1 2 3 21 21 H 1.08003 * 119.94790 * 359.97438 * 13 12 9 22 22 H 1.07994 * 119.93903 * 180.28090 * 14 13 12 23 23 H 1.08004 * 120.04482 * 180.02562 * 17 15 14 24 24 H 0.96998 * 120.00644 * 179.97438 * 19 18 17 25 25 H 0.97000 * 119.99738 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 0.0040 9 16 1.1235 -2.7200 -0.0019 10 8 0.4509 -2.7962 1.2475 11 8 0.4518 -2.7944 -1.2519 12 6 2.3203 -4.0132 -0.0031 13 6 2.4223 -4.8611 1.0827 14 6 3.3567 -5.8798 1.0813 15 6 4.2015 -6.0468 -0.0040 16 9 5.1171 -7.0402 -0.0002 17 6 4.1075 -5.1973 -1.0913 18 6 3.1656 -4.1767 -1.0931 19 7 3.0673 -3.3172 -2.1897 20 1 -0.4850 0.8401 0.0004 21 1 1.7683 -4.7304 1.9322 22 1 3.4312 -6.5440 1.9295 23 1 4.7657 -5.3274 -1.9377 24 1 2.4089 -2.6049 -2.1902 25 1 3.6576 -3.4325 -2.9507 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088064491.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:08 Heat of formation + Delta-G solvation = -114.643149 kcal Electronic energy + Delta-G solvation = -15641.804768 eV Core-core repulsion = 12661.063874 eV Total energy + Delta-G solvation = -2980.740895 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 245.031 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.81092 -38.83241 -35.53901 -34.05517 -33.98347 -33.18455 -30.39366 -28.39261 -26.26103 -22.86887 -22.16845 -18.83599 -17.84926 -17.34040 -16.97122 -16.27271 -15.46675 -15.18506 -15.00027 -14.78371 -14.05597 -13.72966 -13.62646 -12.85315 -12.71143 -12.66930 -12.05980 -11.31576 -11.27816 -11.10203 -10.66424 -10.36425 -10.34511 -10.26759 -9.68651 -9.34589 -8.95061 -8.69735 -7.50269 -6.80959 -5.45813 1.21493 1.75831 2.08633 3.00475 3.08662 3.15533 3.78698 3.97047 4.00513 4.52769 4.59755 4.98749 5.24166 5.33814 5.49057 5.79643 5.91342 6.00474 6.21395 6.32527 6.50810 6.84346 7.06458 7.20517 7.63275 7.84661 8.04609 8.76513 10.12996 Molecular weight = 245.03amu Principal moments of inertia in cm(-1) A = 0.035134 B = 0.008214 C = 0.007709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.763274 B = 3408.190275 C = 3631.396321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.133 3.867 3 Si 0.923 3.077 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.262 1.262 7 C -1.007 5.007 8 H 0.106 0.894 9 S 2.611 3.389 10 O -0.986 6.986 11 O -0.987 6.987 12 C -0.736 4.736 13 C 0.045 3.955 14 C -0.242 4.242 15 C 0.177 3.823 16 F -0.141 7.141 17 C -0.263 4.263 18 C 0.335 3.665 19 N -0.857 5.857 20 H 0.293 0.707 21 H 0.149 0.851 22 H 0.134 0.866 23 H 0.134 0.866 24 H 0.420 0.580 25 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.353 -5.578 -1.769 9.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.085 4.085 3 Si 0.747 3.253 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.186 1.186 7 C -1.140 5.140 8 H 0.124 0.876 9 S 2.792 3.208 10 O -0.983 6.983 11 O -0.984 6.984 12 C -0.823 4.823 13 C 0.026 3.974 14 C -0.264 4.264 15 C 0.157 3.843 16 F -0.120 7.120 17 C -0.287 4.287 18 C 0.222 3.778 19 N -0.396 5.396 20 H 0.103 0.897 21 H 0.167 0.833 22 H 0.152 0.848 23 H 0.152 0.848 24 H 0.256 0.744 25 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.317 -5.702 -1.784 8.695 hybrid contribution 1.546 0.793 -0.298 1.762 sum 7.863 -4.909 -2.082 9.501 Atomic orbital electron populations 1.69898 1.06754 1.30982 1.39142 1.24768 0.94516 1.00773 0.88491 0.86109 0.80213 0.79754 0.79233 1.19130 1.19864 1.18561 1.30202 1.06040 1.10164 1.67629 0.87576 1.00827 0.72847 0.73731 0.73421 1.93316 1.72461 1.87704 1.44801 1.93330 1.72386 1.87923 1.44771 1.30966 1.24436 1.25251 1.01660 1.20632 0.92755 0.88865 0.95171 1.20894 1.01462 1.04282 0.99748 1.17494 0.86943 0.85088 0.94790 1.91469 1.64558 1.59178 1.96790 1.20409 1.06255 1.00920 1.01145 1.16832 0.88698 0.86548 0.85673 1.43168 1.42920 1.35344 1.18145 0.89662 0.83293 0.84850 0.84831 0.74369 0.77188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.29 13.19 55.43 0.73 -22.56 15 2 C 0.13 3.49 5.46 -17.82 -0.10 3.39 15 3 Si 0.92 19.44 29.54 -169.99 -5.02 14.42 15 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 15 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 15 7 C -1.01 -26.01 8.83 30.60 0.27 -25.74 15 8 H 0.11 2.52 7.81 -52.48 -0.41 2.11 15 9 S 2.61 66.71 4.05 -107.50 -0.43 66.27 15 10 O -0.99 -27.70 16.85 -57.17 -0.96 -28.66 15 11 O -0.99 -26.86 16.16 -57.17 -0.92 -27.78 15 12 C -0.74 -15.51 5.76 -39.37 -0.23 -15.74 15 13 C 0.04 0.84 9.54 -39.62 -0.38 0.46 15 14 C -0.24 -3.93 10.02 -39.47 -0.40 -4.32 15 15 C 0.18 2.86 7.30 -39.45 -0.29 2.57 15 16 F -0.14 -2.12 17.27 2.25 0.04 -2.08 15 17 C -0.26 -4.25 9.87 -39.32 -0.39 -4.64 15 18 C 0.33 6.25 6.71 -83.80 -0.56 5.69 15 19 N -0.86 -14.61 8.90 32.40 0.29 -14.32 15 20 H 0.29 7.29 8.31 -40.82 -0.34 6.96 15 21 H 0.15 2.64 7.33 -52.48 -0.38 2.26 15 22 H 0.13 1.76 8.06 -52.49 -0.42 1.34 15 23 H 0.13 1.75 8.06 -52.48 -0.42 1.33 15 24 H 0.42 8.16 5.56 -40.82 -0.23 7.94 15 25 H 0.40 5.05 8.84 -40.82 -0.36 4.69 15 LS Contribution 244.74 15.07 3.69 3.69 Total: -1.00 -31.81 244.74 -6.03 -37.84 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -1.36 Total: 11.49 kcal Atomic # 6 Polarization: -36.26 SS G_CDS: -2.07 Total: -38.32 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 1.02 Total: -36.88 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -1.89 Total: -56.44 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Atomic # 16 Polarization: 66.71 SS G_CDS: -0.43 Total: 66.27 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.81 -6.03 -37.84 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088064491.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.803 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds