Wall clock time and date at job start Mon Mar 30 2020 03:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99846 * 2 1 4 4 H 1.48501 * 109.46966 * 269.99990 * 3 2 1 5 5 H 1.48498 * 109.47151 * 30.00009 * 3 2 1 6 6 H 1.48495 * 109.47337 * 150.00069 * 3 2 1 7 7 C 1.37876 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00094 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99755 * 179.97438 * 7 2 1 10 10 O 1.42097 * 103.00177 * 286.87381 * 9 7 2 11 11 C 1.76202 * 102.99843 * 180.02562 * 9 7 2 12 12 C 1.38134 * 119.96641 * 94.98103 * 11 9 7 13 13 C 1.38875 * 119.93389 * 180.02562 * 12 11 9 14 14 N 1.39739 * 120.06059 * 180.02562 * 13 12 11 15 15 C 1.38918 * 119.87600 * 359.76267 * 13 12 11 16 16 C 1.38082 * 119.94220 * 0.51414 * 15 13 12 17 17 C 1.38360 * 119.96700 * 274.99950 * 11 9 7 18 18 Cl 1.73599 * 119.94142 * 0.02562 * 17 11 9 19 19 H 0.97004 * 120.00099 * 359.97438 * 1 2 3 20 20 H 1.07998 * 120.03051 * 359.97438 * 12 11 9 21 21 H 0.96998 * 119.99978 * 359.97438 * 14 13 12 22 22 H 0.97002 * 120.00407 * 179.97438 * 14 13 12 23 23 H 1.08004 * 120.03087 * 180.23037 * 15 13 12 24 24 H 1.08002 * 119.97475 * 179.74839 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7665 -1.1940 -0.0001 10 8 4.0857 -0.7930 -1.3255 11 6 4.1629 -2.9108 0.0001 12 6 4.4189 -3.5600 -1.1920 13 6 4.7307 -4.9133 -1.1911 14 7 4.9907 -5.5725 -2.3955 15 6 4.7891 -5.6092 0.0098 16 6 4.5267 -4.9565 1.1980 17 6 4.2171 -3.6075 1.1943 18 17 3.8936 -2.7886 2.6905 19 1 -0.4850 0.8401 0.0004 20 1 4.3758 -3.0159 -2.1239 21 1 4.9531 -5.0850 -3.2332 22 1 5.2088 -6.5177 -2.3939 23 1 5.0350 -6.6608 0.0137 24 1 4.5679 -5.4979 2.1316 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088088844.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:29 Heat of formation + Delta-G solvation = -53.227191 kcal Electronic energy + Delta-G solvation = -13260.178469 eV Core-core repulsion = 10710.437145 eV Total energy + Delta-G solvation = -2549.741324 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 245.002 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.24913 -37.41581 -36.12985 -35.14936 -34.91705 -32.01343 -29.35780 -28.13095 -24.18810 -23.12956 -20.23926 -18.76475 -17.92376 -17.79524 -17.27811 -16.67228 -15.58303 -15.42822 -14.99353 -14.79150 -14.72089 -14.19215 -13.39661 -13.30113 -13.03235 -12.96420 -12.79392 -12.34807 -11.90944 -11.77824 -11.17035 -11.15051 -10.75284 -10.15333 -9.12934 -8.67567 -8.45664 -7.00904 0.06753 0.42055 1.07297 1.22410 1.31016 1.32974 1.78852 2.06923 2.57616 2.62332 2.92977 3.03923 3.62454 3.93652 4.14592 4.49202 4.58086 4.82216 5.15233 5.19857 5.30140 5.59685 5.69754 6.18673 6.44211 6.80143 6.94917 8.47850 Molecular weight = 245.00amu Principal moments of inertia in cm(-1) A = 0.028065 B = 0.009762 C = 0.008302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.446571 B = 2867.565613 C = 3371.995900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.081 3.919 3 Si 0.871 3.129 4 H -0.279 1.279 5 H -0.227 1.227 6 H -0.198 1.198 7 C -0.828 4.828 8 H 0.053 0.947 9 S 1.396 4.604 10 O -0.969 6.969 11 C -0.401 4.401 12 C -0.155 4.155 13 C 0.202 3.798 14 N -0.864 5.864 15 C -0.160 4.160 16 C -0.073 4.073 17 C -0.040 4.040 18 Cl -0.061 7.061 19 H 0.283 0.717 20 H 0.103 0.897 21 H 0.402 0.598 22 H 0.414 0.586 23 H 0.171 0.829 24 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.546 -9.508 5.205 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.129 4.129 3 Si 0.690 3.310 4 H -0.204 1.204 5 H -0.149 1.149 6 H -0.120 1.120 7 C -0.967 4.967 8 H 0.072 0.928 9 S 1.599 4.401 10 O -0.964 6.964 11 C -0.498 4.498 12 C -0.180 4.180 13 C 0.095 3.905 14 N -0.405 5.405 15 C -0.183 4.183 16 C -0.092 4.092 17 C -0.071 4.071 18 Cl -0.033 7.033 19 H 0.093 0.907 20 H 0.121 0.879 21 H 0.231 0.769 22 H 0.245 0.755 23 H 0.189 0.811 24 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 11.987 -8.577 5.346 15.679 hybrid contribution -1.457 -0.520 -2.371 2.831 sum 10.530 -9.097 2.975 14.230 Atomic orbital electron populations 1.70077 1.08235 1.29798 1.44364 1.25516 0.95416 1.02428 0.89577 0.86705 0.82880 0.80767 0.80690 1.20431 1.14924 1.11979 1.27602 1.10046 0.98073 1.61010 0.92814 1.67383 0.87622 0.81940 1.03177 1.92712 1.83864 1.76399 1.43417 1.27622 1.06066 1.20391 0.95745 1.20414 1.06148 0.94269 0.97124 1.18024 0.93164 0.90527 0.88802 1.42374 1.79880 1.13430 1.04813 1.21006 1.06359 1.01456 0.89448 1.21253 0.96658 0.91168 1.00161 1.20318 1.06936 0.93977 0.85827 1.98335 1.94197 1.79310 1.31410 0.90736 0.87939 0.76946 0.75497 0.81119 0.81304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.43 13.96 21.45 0.30 -54.13 14 2 C 0.08 4.75 5.47 84.65 0.46 5.22 14 3 Si 0.87 41.23 27.12 68.60 1.86 43.09 14 4 H -0.28 -14.18 7.11 99.48 0.71 -13.47 14 5 H -0.23 -9.39 7.11 99.48 0.71 -8.68 14 6 H -0.20 -7.91 6.73 99.48 0.67 -7.24 14 7 C -0.83 -49.23 9.88 67.73 0.67 -48.56 14 8 H 0.05 3.54 8.06 -2.91 -0.02 3.51 14 9 S 1.40 69.34 10.57 -56.49 -0.60 68.74 14 10 O -0.97 -56.98 15.57 -148.98 -2.32 -59.30 14 11 C -0.40 -17.55 5.61 22.27 0.12 -17.43 14 12 C -0.16 -6.55 9.31 22.40 0.21 -6.34 14 13 C 0.20 6.31 6.76 38.20 0.26 6.56 14 14 N -0.86 -19.45 9.09 -51.35 -0.47 -19.92 14 15 C -0.16 -4.06 9.90 22.40 0.22 -3.84 14 16 C -0.07 -2.01 9.82 22.27 0.22 -1.79 14 17 C -0.04 -1.46 6.32 22.34 0.14 -1.31 14 18 Cl -0.06 -2.02 27.79 -2.72 -0.08 -2.10 14 19 H 0.28 15.63 8.31 -92.70 -0.77 14.86 14 20 H 0.10 4.85 7.22 -2.91 -0.02 4.83 14 21 H 0.40 8.83 8.84 -92.71 -0.82 8.01 14 22 H 0.41 6.14 8.84 -92.71 -0.82 5.32 14 23 H 0.17 2.74 8.06 -2.91 -0.02 2.71 14 24 H 0.17 3.33 8.06 -2.91 -0.02 3.31 14 Total: -1.00 -78.52 245.48 0.59 -77.94 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -0.42 Total: 13.17 kcal Atomic # 6 Polarization: -69.80 SS G_CDS: 2.31 Total: -67.49 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -0.17 Total: -74.05 kcal Atomic # 8 Polarization: -56.98 SS G_CDS: -2.32 Total: -59.30 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.86 Total: 43.09 kcal Atomic # 16 Polarization: 69.34 SS G_CDS: -0.60 Total: 68.74 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.08 Total: -2.10 kcal Total: -78.52 0.59 -77.94 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088088844.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.711 kcal (2) G-P(sol) polarization free energy of solvation -78.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds