Wall clock time and date at job start Mon Mar 30 2020 03:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00151 * 2 1 4 4 H 1.48492 * 109.47265 * 269.99821 * 3 2 1 5 5 H 1.48503 * 109.46738 * 30.00025 * 3 2 1 6 6 H 1.48500 * 109.47181 * 149.99772 * 3 2 1 7 7 C 1.37878 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99934 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00092 * 179.97438 * 7 2 1 10 10 O 1.42103 * 102.99905 * 73.13324 * 9 7 2 11 11 C 1.76205 * 103.00004 * 180.02562 * 9 7 2 12 12 C 1.38287 * 119.91904 * 269.97479 * 11 9 7 13 13 C 1.38117 * 120.09327 * 180.02562 * 12 11 9 14 14 C 1.38885 * 119.93480 * 0.02562 * 13 12 11 15 15 N 1.39752 * 120.07451 * 179.97438 * 14 13 12 16 16 C 1.38980 * 119.84752 * 359.97438 * 14 13 12 17 17 Cl 1.73599 * 120.04890 * 179.97438 * 16 14 13 18 18 C 1.38215 * 119.90596 * 0.02562 * 16 14 13 19 19 H 0.96995 * 119.99921 * 0.02562 * 1 2 3 20 20 H 1.07998 * 119.95895 * 0.02562 * 12 11 9 21 21 H 1.08003 * 120.03332 * 179.97438 * 13 12 11 22 22 H 0.97004 * 119.99747 * 180.02562 * 15 14 13 23 23 H 0.97000 * 120.00462 * 0.02562 * 15 14 13 24 24 H 1.07997 * 119.97072 * 179.72506 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7665 -1.1941 -0.0001 10 8 4.0867 -0.7914 1.3245 11 6 4.1629 -2.9109 0.0001 12 6 4.3190 -3.5826 1.1987 13 6 4.6303 -4.9283 1.2031 14 6 4.7871 -5.6073 0.0018 15 7 5.1025 -6.9687 0.0028 16 6 4.6295 -4.9297 -1.2014 17 17 4.8250 -5.7731 -2.7061 18 6 4.3181 -3.5831 -1.1983 19 1 -0.4850 0.8400 -0.0004 20 1 4.1975 -3.0543 2.1328 21 1 4.7524 -5.4518 2.1399 22 1 5.2121 -7.4418 -0.8370 23 1 5.2118 -7.4407 0.8431 24 1 4.1999 -3.0545 -2.1326 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088089034.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:33 Heat of formation + Delta-G solvation = -54.229561 kcal Electronic energy + Delta-G solvation = -13063.332580 eV Core-core repulsion = 10513.547790 eV Total energy + Delta-G solvation = -2549.784790 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 245.002 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.31503 -37.34934 -36.02938 -35.53366 -34.84535 -31.68817 -29.63422 -28.04112 -23.93416 -23.33994 -20.15595 -18.70436 -18.01928 -17.84433 -17.46511 -16.30702 -15.57685 -15.38838 -14.94591 -14.79688 -14.65012 -14.32658 -13.73848 -13.20190 -12.75746 -12.66456 -12.57374 -12.33233 -11.95029 -11.88032 -11.76429 -10.99078 -10.58981 -9.79697 -9.15499 -8.62811 -8.55891 -6.94827 0.21118 0.31129 1.14086 1.22913 1.28415 1.47819 1.93030 2.16919 2.56228 2.74112 2.80309 3.15776 3.74421 3.84764 4.20676 4.43267 4.60431 4.90484 4.93932 5.08493 5.47802 5.64970 5.72719 6.24983 6.32174 6.83423 6.88310 8.54132 Molecular weight = 245.00amu Principal moments of inertia in cm(-1) A = 0.037822 B = 0.007067 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.137808 B = 3960.996895 C = 4222.925486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.074 3.926 3 Si 0.866 3.134 4 H -0.195 1.195 5 H -0.260 1.260 6 H -0.232 1.232 7 C -0.843 4.843 8 H 0.047 0.953 9 S 1.419 4.581 10 O -0.971 6.971 11 C -0.497 4.497 12 C -0.027 4.027 13 C -0.208 4.208 14 C 0.251 3.749 15 N -0.853 5.853 16 C -0.140 4.140 17 Cl -0.058 7.058 18 C 0.007 3.993 19 H 0.280 0.720 20 H 0.103 0.897 21 H 0.150 0.850 22 H 0.408 0.592 23 H 0.414 0.586 24 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.041 -10.055 -6.848 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.135 4.135 3 Si 0.683 3.317 4 H -0.117 1.117 5 H -0.184 1.184 6 H -0.155 1.155 7 C -0.982 4.982 8 H 0.066 0.934 9 S 1.621 4.379 10 O -0.966 6.966 11 C -0.596 4.596 12 C -0.048 4.048 13 C -0.232 4.232 14 C 0.141 3.859 15 N -0.394 5.394 16 C -0.173 4.173 17 Cl -0.029 7.029 18 C -0.013 4.013 19 H 0.089 0.911 20 H 0.121 0.879 21 H 0.167 0.833 22 H 0.240 0.760 23 H 0.244 0.756 24 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 12.531 -9.290 -6.966 17.084 hybrid contribution -1.508 -1.128 2.066 2.795 sum 11.023 -10.418 -4.900 15.939 Atomic orbital electron populations 1.70123 1.08647 1.29691 1.45010 1.25676 0.95369 1.03030 0.89410 0.86812 0.81657 0.79399 0.83841 1.11686 1.18363 1.15527 1.28023 1.11629 0.97711 1.60807 0.93426 1.66609 0.85900 0.81550 1.03821 1.92766 1.83592 1.76835 1.43451 1.27701 1.14630 1.20680 0.96580 1.20931 0.91920 0.94343 0.97563 1.20739 1.10988 0.94274 0.97164 1.17543 0.90648 0.85918 0.91741 1.42518 1.78700 1.05571 1.12594 1.20491 1.16766 0.93918 0.86086 1.98308 1.96470 1.77388 1.30749 1.20825 0.90872 0.91646 0.98003 0.91054 0.87898 0.83254 0.76047 0.75551 0.81566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.78 13.96 21.45 0.30 -54.48 14 2 C 0.07 4.27 5.47 84.66 0.46 4.74 14 3 Si 0.87 39.14 27.42 68.60 1.88 41.02 14 4 H -0.20 -7.11 7.11 99.48 0.71 -6.41 14 5 H -0.26 -11.54 7.11 99.48 0.71 -10.84 14 6 H -0.23 -10.83 5.95 99.48 0.59 -10.23 14 7 C -0.84 -48.75 9.88 67.73 0.67 -48.08 14 8 H 0.05 3.07 8.06 -2.91 -0.02 3.05 14 9 S 1.42 65.40 11.86 -56.49 -0.67 64.73 14 10 O -0.97 -54.95 15.02 -148.98 -2.24 -57.19 14 11 C -0.50 -20.46 5.60 22.29 0.12 -20.33 14 12 C -0.03 -1.13 9.44 22.25 0.21 -0.92 14 13 C -0.21 -6.66 9.90 22.40 0.22 -6.44 14 14 C 0.25 7.04 6.75 38.21 0.26 7.30 14 15 N -0.85 -16.15 9.05 -51.29 -0.46 -16.61 14 16 C -0.14 -4.15 6.34 22.44 0.14 -4.01 14 17 Cl -0.06 -1.35 27.60 -2.72 -0.08 -1.42 14 18 C 0.01 0.22 9.53 22.27 0.21 0.44 14 19 H 0.28 15.47 8.31 -92.71 -0.77 14.70 14 20 H 0.10 4.77 7.30 -2.91 -0.02 4.75 14 21 H 0.15 3.85 8.06 -2.91 -0.02 3.82 14 22 H 0.41 6.62 7.51 -92.71 -0.70 5.92 14 23 H 0.41 5.70 8.84 -92.71 -0.82 4.88 14 24 H 0.17 4.48 8.06 -2.91 -0.02 4.46 14 Total: -1.00 -77.83 244.09 0.66 -77.17 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -0.37 Total: 14.10 kcal Atomic # 6 Polarization: -69.62 SS G_CDS: 2.30 Total: -67.32 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -0.16 Total: -71.09 kcal Atomic # 8 Polarization: -54.95 SS G_CDS: -2.24 Total: -57.19 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 1.88 Total: 41.02 kcal Atomic # 16 Polarization: 65.40 SS G_CDS: -0.67 Total: 64.73 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.42 kcal Total: -77.83 0.66 -77.17 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088089034.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.939 kcal (2) G-P(sol) polarization free energy of solvation -77.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds