Wall clock time and date at job start Mon Mar 30 2020 04:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31053 * 1 3 3 Si 1.86807 * 119.99529 * 2 1 4 4 H 1.48501 * 109.46768 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46771 * 299.99573 * 3 2 1 6 6 H 1.48497 * 109.47126 * 59.99965 * 3 2 1 7 7 C 1.39736 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99716 * 180.02562 * 7 2 1 9 9 C 1.40894 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.38889 * 126.93086 * 359.97438 * 9 7 2 11 11 N 1.35641 * 109.28593 * 180.02562 * 10 9 7 12 12 C 1.46498 * 124.69365 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46935 * 264.95134 * 12 11 10 14 14 O 1.20824 * 119.99916 * 0.02562 * 13 12 11 15 15 O 1.34229 * 120.00092 * 179.97438 * 13 12 11 16 16 C 1.38148 * 110.61728 * 359.97438 * 11 10 9 17 17 C 1.39124 * 132.81082 * 180.02562 * 16 11 10 18 18 C 1.37860 * 119.97204 * 180.02562 * 17 16 11 19 19 C 1.38672 * 120.62761 * 359.97438 * 18 17 16 20 20 C 1.37885 * 120.24980 * 0.02562 * 19 18 17 21 21 C 1.39192 * 119.68939 * 0.27755 * 20 19 18 22 22 H 0.96994 * 120.00534 * 0.02562 * 1 2 3 23 23 H 1.07997 * 125.35954 * 0.02562 * 10 9 7 24 24 H 1.08999 * 109.47459 * 24.95229 * 12 11 10 25 25 H 1.09001 * 109.46960 * 144.95723 * 12 11 10 26 26 H 0.96703 * 116.99764 * 180.02562 * 15 13 12 27 27 H 1.08002 * 120.01297 * 0.02562 * 17 16 11 28 28 H 1.08000 * 119.68860 * 179.97438 * 18 17 16 29 29 H 1.07998 * 119.88061 * 179.97438 * 19 18 17 30 30 H 1.08002 * 120.15165 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2444 1.6179 0.0000 4 1 3.7045 1.3465 0.0006 5 1 1.8856 2.3964 -1.2126 6 1 1.8856 2.3965 1.2125 7 6 2.0093 -1.2101 -0.0005 8 1 3.0893 -1.2100 -0.0001 9 6 1.3048 -2.4303 -0.0005 10 6 -0.0739 -2.5980 0.0005 11 7 -0.3641 -3.9230 0.0007 12 6 -1.7191 -4.4798 0.0011 13 6 -2.1357 -4.7863 1.4166 14 8 -1.3787 -4.5621 2.3311 15 8 -3.3483 -5.3074 1.6614 16 6 0.7949 -4.6748 -0.0008 17 6 1.0327 -6.0456 -0.0016 18 6 2.3271 -6.5200 -0.0025 19 6 3.4011 -5.6428 -0.0031 20 6 3.1856 -4.2809 -0.0022 21 6 1.8835 -3.7889 0.0051 22 1 -0.4850 0.8399 -0.0004 23 1 -0.8006 -1.7991 0.0010 24 1 -2.4095 -3.7562 -0.4323 25 1 -1.7355 -5.3962 -0.5889 26 1 -3.5707 -5.4866 2.5853 27 1 0.2036 -6.7377 -0.0016 28 1 2.5064 -7.5850 -0.0028 29 1 4.4102 -6.0277 -0.0033 30 1 4.0232 -3.5991 -0.0022 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113845873.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:16 Heat of formation + Delta-G solvation = -53.785503 kcal Electronic energy + Delta-G solvation = -17113.770585 eV Core-core repulsion = 14259.518124 eV Total energy + Delta-G solvation = -2854.252461 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.87391 -40.81551 -37.59440 -37.03759 -35.65619 -33.24055 -31.18949 -29.47657 -29.05730 -26.27876 -23.55536 -22.78901 -21.77083 -21.01701 -19.19515 -18.79101 -17.79436 -17.40261 -17.00958 -16.70931 -16.03091 -15.95363 -14.90157 -14.69408 -14.53121 -14.35417 -13.90474 -13.48055 -13.01939 -12.97624 -12.95510 -12.58155 -12.47107 -12.23543 -11.96665 -11.66751 -11.61644 -11.31946 -11.19718 -10.11217 -8.70173 -8.46694 -8.40554 -5.98485 0.56062 0.92365 1.13994 1.36359 1.40661 1.55156 1.83221 2.27380 2.34818 2.52554 3.14597 3.65186 3.93288 4.03213 4.22250 4.30795 4.38496 4.45862 4.68551 4.82406 5.01491 5.19313 5.31870 5.44223 5.55044 5.68658 5.86408 5.94021 6.00577 6.23104 6.56669 6.74798 6.91964 7.06614 7.17674 7.25728 8.58353 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.009008 C = 0.006437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.001152 B = 3107.517386 C = 4348.541820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.010 3.990 3 Si 0.988 3.012 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.452 4.452 8 H 0.063 0.937 9 C -0.025 4.025 10 C -0.100 4.100 11 N -0.473 5.473 12 C 0.123 3.877 13 C 0.462 3.538 14 O -0.545 6.545 15 O -0.503 6.503 16 C 0.084 3.916 17 C -0.155 4.155 18 C -0.106 4.106 19 C -0.175 4.175 20 C -0.086 4.086 21 C -0.162 4.162 22 H 0.279 0.721 23 H 0.178 0.822 24 H 0.145 0.855 25 H 0.151 0.849 26 H 0.426 0.574 27 H 0.130 0.870 28 H 0.153 0.847 29 H 0.142 0.858 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 -9.486 -0.831 10.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.485 4.485 8 H 0.082 0.918 9 C -0.031 4.031 10 C -0.222 4.222 11 N -0.159 5.159 12 C -0.001 4.001 13 C 0.304 3.696 14 O -0.435 6.435 15 O -0.316 6.316 16 C -0.023 4.023 17 C -0.176 4.176 18 C -0.125 4.125 19 C -0.195 4.195 20 C -0.104 4.104 21 C -0.168 4.168 22 H 0.089 0.911 23 H 0.194 0.806 24 H 0.162 0.838 25 H 0.168 0.832 26 H 0.288 0.712 27 H 0.148 0.852 28 H 0.171 0.829 29 H 0.160 0.840 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.604 -9.197 -0.984 10.332 hybrid contribution 0.097 1.006 0.899 1.352 sum -4.507 -8.192 -0.085 9.350 Atomic orbital electron populations 1.69516 1.08273 1.28815 1.42313 1.26496 0.95798 1.03716 0.93639 0.85041 0.78861 0.76633 0.78419 1.18791 1.19161 1.19780 1.18992 0.93809 0.90476 1.45228 0.91830 1.18542 0.91861 0.90630 1.02031 1.23031 0.97439 0.82497 1.19210 1.43138 1.02842 1.05339 1.64623 1.21227 0.83938 1.04481 0.90434 1.24460 0.79116 0.72612 0.93417 1.90784 1.54567 1.50120 1.48005 1.84470 1.33609 1.75193 1.38318 1.18589 0.86097 0.93260 1.04383 1.20206 0.98493 0.90326 1.08551 1.20993 0.90936 1.00307 1.00241 1.20997 0.99907 0.91794 1.06766 1.20626 0.94332 0.96161 0.99318 1.19850 0.93805 0.94336 1.08800 0.91072 0.80552 0.83784 0.83184 0.71218 0.85207 0.82907 0.84022 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.84 10.33 21.80 0.23 -46.61 16 2 C 0.01 0.56 5.49 85.17 0.47 1.03 16 3 Si 0.99 41.75 29.56 68.60 2.03 43.78 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.45 -26.36 9.42 23.28 0.22 -26.14 16 8 H 0.06 3.62 7.84 -2.91 -0.02 3.59 16 9 C -0.03 -1.48 6.10 -19.98 -0.12 -1.60 16 10 C -0.10 -5.41 10.30 84.26 0.87 -4.54 16 11 N -0.47 -21.31 2.24 -516.71 -1.16 -22.47 16 12 C 0.12 3.88 6.53 85.63 0.56 4.44 16 13 C 0.46 14.94 8.40 71.24 0.60 15.54 16 14 O -0.55 -23.74 17.18 21.97 0.38 -23.36 16 15 O -0.50 -11.01 13.42 -51.41 -0.69 -11.70 16 16 C 0.08 3.88 6.77 38.87 0.26 4.15 16 17 C -0.15 -5.74 9.95 22.39 0.22 -5.51 16 18 C -0.11 -3.51 10.01 22.28 0.22 -3.29 16 19 C -0.17 -6.30 10.04 22.29 0.22 -6.08 16 20 C -0.09 -3.86 10.09 22.42 0.23 -3.64 16 21 C -0.16 -8.44 6.33 -20.04 -0.13 -8.57 16 22 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 23 H 0.18 9.90 5.68 -2.91 -0.02 9.89 16 24 H 0.14 3.90 8.11 -2.39 -0.02 3.88 16 25 H 0.15 3.52 8.14 -2.39 -0.02 3.50 16 26 H 0.43 5.86 9.10 -74.06 -0.67 5.18 16 27 H 0.13 3.89 8.06 -2.91 -0.02 3.86 16 28 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 29 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 30 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -74.91 272.88 4.91 -70.00 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.51 Total: 24.58 kcal Atomic # 6 Polarization: -37.84 SS G_CDS: 3.62 Total: -34.22 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: -0.93 Total: -69.08 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.31 Total: -35.06 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -74.91 4.91 -70.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113845873.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.218 kcal (2) G-P(sol) polarization free energy of solvation -74.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds