Wall clock time and date at job start Mon Mar 30 2020 03:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.39769 * 125.83522 * 124.71484 * 3 2 1 5 5 C 1.36174 * 107.80979 * 179.83394 * 4 3 2 6 6 N 1.39209 * 126.21918 * 180.16006 * 5 4 3 7 7 S 1.65605 * 119.99965 * 225.29026 * 6 5 4 8 8 O 1.42103 * 106.40044 * 178.54217 * 7 6 5 9 9 O 1.42094 * 106.40286 * 311.46253 * 7 6 5 10 10 C 1.76196 * 107.21352 * 65.00251 * 7 6 5 11 11 H 1.07993 * 120.00647 * 359.97438 * 10 7 6 12 12 C 1.37884 * 119.99816 * 179.97438 * 10 7 6 13 13 N 1.31520 * 119.99804 * 0.02562 * 12 10 7 14 14 Si 1.86796 * 120.00237 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.46967 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.47199 * 120.00011 * 14 12 10 17 17 H 1.48502 * 109.47529 * 240.00261 * 14 12 10 18 18 N 1.35243 * 107.55822 * 0.42745 * 5 4 3 19 19 H 0.97006 * 126.04236 * 179.75351 * 18 5 4 20 20 N 1.30836 * 125.83731 * 305.03140 * 3 2 1 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 24 24 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 25 25 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 26 26 H 1.07997 * 126.09751 * 359.97438 * 4 3 2 27 27 H 0.97001 * 120.00473 * 45.29205 * 6 5 4 28 28 H 0.96999 * 119.99860 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9135 1.9772 0.9314 5 6 3.1219 3.2770 0.5829 6 7 3.9386 4.1865 1.2490 7 16 3.3939 5.7206 1.5528 8 8 4.4310 6.3808 2.2655 9 8 2.8606 6.2068 0.3288 10 6 2.0358 5.5807 2.6666 11 1 1.7180 4.6078 3.0113 12 6 1.3788 6.7135 3.0983 13 7 1.7655 7.8983 2.6782 14 14 -0.0615 6.5653 4.2785 15 1 -0.2956 5.1337 4.5964 16 1 0.2448 7.3057 5.5287 17 1 -1.2783 7.1385 3.6492 18 7 2.3864 3.5254 -0.5245 19 1 2.3342 4.3709 -0.9973 20 7 1.7137 2.3460 -0.8685 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.3528 1.4666 1.7756 27 1 4.8268 3.9217 1.5353 28 1 1.3035 8.6952 2.9822 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129352722.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:49 Heat of formation + Delta-G solvation = -32.625268 kcal Electronic energy + Delta-G solvation = -15875.606663 eV Core-core repulsion = 13054.175386 eV Total energy + Delta-G solvation = -2821.431277 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 245.062 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.85784 -35.63667 -34.97386 -34.32227 -33.39398 -33.15473 -29.72317 -28.15345 -26.29413 -23.94616 -20.93692 -19.79883 -19.05392 -18.25171 -17.21635 -16.50433 -15.43188 -15.02545 -14.61539 -14.13800 -13.85468 -13.81395 -13.52536 -13.16384 -12.21672 -12.14095 -11.48624 -11.35470 -11.31692 -11.30295 -10.94233 -10.68432 -10.65238 -10.59997 -10.52440 -9.98490 -9.38418 -9.06727 -8.77832 -7.94447 -6.85568 -5.49213 1.79307 2.34381 2.99303 3.04878 3.07822 3.15628 3.26903 3.95413 4.38781 4.50934 4.92508 5.11880 5.41624 5.45260 5.57502 5.79677 5.92027 5.94491 6.06700 6.16703 6.24562 6.37175 6.49637 7.00804 7.18601 7.36930 7.78813 7.83786 8.14715 8.74398 10.08973 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.024502 B = 0.008702 C = 0.007104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.487406 B = 3217.053010 C = 3940.236317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.039 4.039 3 C 0.081 3.919 4 C -0.292 4.292 5 C 0.345 3.655 6 N -1.051 6.051 7 S 2.698 3.302 8 O -0.988 6.988 9 O -1.001 7.001 10 C -1.012 5.012 11 H 0.108 0.892 12 C 0.133 3.867 13 N -0.844 5.844 14 Si 0.925 3.075 15 H -0.260 1.260 16 H -0.269 1.269 17 H -0.270 1.270 18 N -0.470 5.470 19 H 0.448 0.552 20 N -0.289 5.289 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.148 0.852 27 H 0.424 0.576 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 -11.856 -1.918 12.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 C -0.085 4.085 4 C -0.326 4.326 5 C 0.120 3.880 6 N -0.800 5.800 7 S 2.799 3.201 8 O -0.978 6.978 9 O -0.990 6.990 10 C -1.146 5.146 11 H 0.126 0.874 12 C -0.085 4.085 13 N -0.473 5.473 14 Si 0.749 3.251 15 H -0.184 1.184 16 H -0.194 1.194 17 H -0.195 1.195 18 N -0.186 5.186 19 H 0.296 0.704 20 N -0.115 5.115 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.166 0.834 27 H 0.260 0.740 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.477 -10.483 -3.392 11.028 hybrid contribution -0.153 0.022 1.661 1.669 sum -0.630 -10.461 -1.730 10.622 Atomic orbital electron populations 1.21726 0.94626 1.01338 1.02865 1.19917 0.96162 0.88880 1.02834 1.22006 0.96648 0.96192 0.93686 1.20898 1.10818 0.94230 1.06636 1.17465 0.92322 0.91145 0.87110 1.53646 1.24953 1.32551 1.68889 1.01180 0.75235 0.68777 0.74866 1.93416 1.60079 1.70030 1.74265 1.93331 1.80706 1.76572 1.48432 1.30363 1.36206 1.01102 1.46953 0.87401 1.24770 0.96738 0.93209 0.93829 1.69886 1.39105 0.99021 1.39295 0.86040 0.79844 0.79705 0.79535 1.18388 1.19407 1.19472 1.46871 1.37565 1.12878 1.21267 0.70381 1.77229 1.20275 0.90693 1.23317 0.92560 0.92428 0.92033 0.90533 0.90139 0.83438 0.74025 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.87 37.16 0.37 -1.30 15 2 C -0.04 -0.45 6.51 -27.88 -0.18 -0.63 15 3 C 0.08 1.31 6.48 -82.44 -0.53 0.77 15 4 C -0.29 -4.90 10.76 -39.75 -0.43 -5.33 15 5 C 0.35 6.64 7.49 -153.41 -1.15 5.49 15 6 N -1.05 -20.41 5.88 31.10 0.18 -20.22 15 7 S 2.70 68.19 4.99 -107.50 -0.54 67.65 15 8 O -0.99 -27.46 18.02 -57.17 -1.03 -28.49 15 9 O -1.00 -27.08 16.15 -57.17 -0.92 -28.00 15 10 C -1.01 -27.22 9.68 30.60 0.30 -26.92 15 11 H 0.11 2.73 7.81 -52.49 -0.41 2.32 15 12 C 0.13 3.63 5.46 -17.81 -0.10 3.53 15 13 N -0.84 -24.03 13.19 55.43 0.73 -23.30 15 14 Si 0.93 20.34 29.54 -169.99 -5.02 15.32 15 15 H -0.26 -5.57 7.11 56.52 0.40 -5.17 15 16 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 17 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 18 N -0.47 -9.29 7.12 31.10 0.22 -9.07 15 19 H 0.45 8.93 7.49 -182.62 -1.37 7.56 15 20 N -0.29 -5.33 12.65 33.65 0.43 -4.90 15 21 H 0.06 0.49 8.14 -51.93 -0.42 0.07 15 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.08 0.78 8.12 -51.93 -0.42 0.36 15 26 H 0.15 2.06 8.06 -52.49 -0.42 1.64 15 27 H 0.42 6.70 8.95 -34.47 -0.31 6.39 15 28 H 0.29 7.47 8.31 -40.82 -0.34 7.13 15 LS Contribution 266.41 15.07 4.01 4.01 Total: -1.00 -33.28 266.41 -7.42 -40.70 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -3.76 Total: 10.69 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -1.73 Total: -24.39 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 1.56 Total: -57.50 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -1.95 Total: -56.49 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 68.19 SS G_CDS: -0.54 Total: 67.65 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.28 -7.42 -40.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129352722.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.076 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds