Wall clock time and date at job start Mon Mar 30 2020 03:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.39769 * 125.83522 * 124.71484 * 3 2 1 5 5 C 1.36174 * 107.80979 * 179.83394 * 4 3 2 6 6 N 1.39209 * 126.21918 * 180.16006 * 5 4 3 7 7 S 1.65605 * 119.99965 * 225.29026 * 6 5 4 8 8 O 1.42103 * 106.40044 * 178.54217 * 7 6 5 9 9 O 1.42094 * 106.40286 * 311.46253 * 7 6 5 10 10 C 1.76196 * 107.21352 * 65.00251 * 7 6 5 11 11 H 1.07993 * 120.00647 * 359.97438 * 10 7 6 12 12 C 1.37884 * 119.99816 * 179.97438 * 10 7 6 13 13 N 1.31520 * 119.99804 * 0.02562 * 12 10 7 14 14 Si 1.86796 * 120.00237 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.46967 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.47199 * 120.00011 * 14 12 10 17 17 H 1.48502 * 109.47529 * 240.00261 * 14 12 10 18 18 N 1.35243 * 107.55822 * 0.42745 * 5 4 3 19 19 H 0.97006 * 126.04236 * 179.75351 * 18 5 4 20 20 N 1.30836 * 125.83731 * 305.03140 * 3 2 1 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 24 24 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 25 25 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 26 26 H 1.07997 * 126.09751 * 359.97438 * 4 3 2 27 27 H 0.97001 * 120.00473 * 45.29205 * 6 5 4 28 28 H 0.96999 * 119.99860 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9135 1.9772 0.9314 5 6 3.1219 3.2770 0.5829 6 7 3.9386 4.1865 1.2490 7 16 3.3939 5.7206 1.5528 8 8 4.4310 6.3808 2.2655 9 8 2.8606 6.2068 0.3288 10 6 2.0358 5.5807 2.6666 11 1 1.7180 4.6078 3.0113 12 6 1.3788 6.7135 3.0983 13 7 1.7655 7.8983 2.6782 14 14 -0.0615 6.5653 4.2785 15 1 -0.2956 5.1337 4.5964 16 1 0.2448 7.3057 5.5287 17 1 -1.2783 7.1385 3.6492 18 7 2.3864 3.5254 -0.5245 19 1 2.3342 4.3709 -0.9973 20 7 1.7137 2.3460 -0.8685 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.3528 1.4666 1.7756 27 1 4.8268 3.9217 1.5353 28 1 1.3035 8.6952 2.9822 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129352722.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:48 Heat of formation + Delta-G solvation = -58.942531 kcal Electronic energy + Delta-G solvation = -15876.747865 eV Core-core repulsion = 13054.175386 eV Total energy + Delta-G solvation = -2822.572479 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 245.062 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.24536 -37.69076 -36.48367 -36.37755 -35.27164 -34.51259 -30.96726 -29.59178 -28.36849 -24.98617 -22.39572 -21.48060 -20.66212 -19.82037 -18.91553 -18.46247 -17.21811 -16.70250 -16.11539 -15.82111 -15.67292 -14.86183 -14.75924 -14.51479 -14.10046 -13.45754 -13.18708 -13.08820 -13.02426 -12.75680 -12.70842 -12.35502 -12.34764 -12.23300 -11.87353 -11.33581 -11.33192 -11.05495 -10.16845 -9.39992 -8.85423 -7.59920 -0.09971 0.90354 1.29234 1.30721 1.48734 1.70915 1.85505 2.14877 2.48844 2.68373 3.44118 3.71225 4.03837 4.18136 4.44956 4.52547 4.61872 4.73710 4.82048 5.09831 5.17100 5.19376 5.31234 5.47870 5.74475 5.80639 5.92032 6.32617 6.68818 6.75595 8.11004 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.024502 B = 0.008702 C = 0.007104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.487406 B = 3217.053010 C = 3940.236317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.038 4.038 3 C 0.084 3.916 4 C -0.279 4.279 5 C 0.314 3.686 6 N -1.034 6.034 7 S 2.711 3.289 8 O -1.021 7.021 9 O -1.028 7.028 10 C -1.033 5.033 11 H 0.118 0.882 12 C 0.075 3.925 13 N -0.888 5.888 14 Si 0.989 3.011 15 H -0.250 1.250 16 H -0.254 1.254 17 H -0.260 1.260 18 N -0.490 5.490 19 H 0.441 0.559 20 N -0.308 5.308 21 H 0.085 0.915 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.180 0.820 27 H 0.440 0.560 28 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 -14.246 -0.873 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 C -0.083 4.083 4 C -0.313 4.313 5 C 0.090 3.910 6 N -0.789 5.789 7 S 2.813 3.187 8 O -1.011 7.011 9 O -1.017 7.017 10 C -1.168 5.168 11 H 0.136 0.864 12 C -0.139 4.139 13 N -0.519 5.519 14 Si 0.807 3.193 15 H -0.173 1.173 16 H -0.178 1.178 17 H -0.184 1.184 18 N -0.205 5.205 19 H 0.287 0.713 20 N -0.134 5.134 21 H 0.104 0.896 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.113 0.887 25 H 0.127 0.873 26 H 0.197 0.803 27 H 0.279 0.721 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.316 -12.883 -2.348 13.161 hybrid contribution 0.151 0.640 1.266 1.427 sum -1.165 -12.243 -1.082 12.346 Atomic orbital electron populations 1.21720 0.94411 1.02870 1.01422 1.20172 0.96244 0.86146 1.05160 1.22829 0.95480 0.97672 0.92318 1.21374 1.09764 0.93101 1.07020 1.17827 0.93481 0.91991 0.87737 1.52867 1.25820 1.31141 1.69045 1.00474 0.74532 0.69566 0.74091 1.93363 1.60871 1.72013 1.74882 1.93292 1.81098 1.78092 1.49204 1.30724 1.36877 1.01779 1.47386 0.86395 1.25957 0.99711 0.92705 0.95548 1.69956 1.40876 1.00115 1.40929 0.85101 0.76167 0.80444 0.77546 1.17277 1.17801 1.18441 1.46989 1.38400 1.13162 1.21920 0.71254 1.77240 1.20751 0.90852 1.24530 0.89567 0.93689 0.93673 0.88651 0.87313 0.80309 0.72068 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.87 71.98 0.71 -2.17 15 2 C -0.04 -0.75 6.51 29.85 0.19 -0.56 15 3 C 0.08 2.50 6.48 43.08 0.28 2.78 15 4 C -0.28 -8.67 10.76 22.16 0.24 -8.43 15 5 C 0.31 11.80 7.49 131.43 0.98 12.79 15 6 N -1.03 -39.87 5.88 -55.50 -0.33 -40.20 15 7 S 2.71 139.20 4.99 -56.49 -0.28 138.92 15 8 O -1.02 -57.92 18.02 -128.00 -2.31 -60.23 15 9 O -1.03 -57.22 16.15 -128.00 -2.07 -59.28 15 10 C -1.03 -55.60 9.68 67.74 0.66 -54.95 15 11 H 0.12 5.89 7.81 -2.91 -0.02 5.87 15 12 C 0.07 4.06 5.46 84.66 0.46 4.52 15 13 N -0.89 -51.22 13.19 21.45 0.28 -50.94 15 14 Si 0.99 40.68 29.54 68.60 2.03 42.71 15 15 H -0.25 -9.72 7.11 99.48 0.71 -9.02 15 16 H -0.25 -9.74 7.11 99.48 0.71 -9.03 15 17 H -0.26 -10.19 7.11 99.48 0.71 -9.48 15 18 N -0.49 -19.43 7.12 -55.51 -0.40 -19.82 15 19 H 0.44 18.17 7.49 -213.34 -1.60 16.57 15 20 N -0.31 -11.10 12.65 -47.44 -0.60 -11.70 15 21 H 0.09 1.18 8.14 -2.39 -0.02 1.17 15 22 H 0.04 0.99 8.14 -2.39 -0.02 0.97 15 23 H 0.04 1.03 8.14 -2.38 -0.02 1.01 15 24 H 0.10 1.57 8.14 -2.39 -0.02 1.55 15 25 H 0.11 1.56 8.12 -2.39 -0.02 1.54 15 26 H 0.18 4.29 8.06 -2.91 -0.02 4.27 15 27 H 0.44 13.61 8.95 -96.74 -0.87 12.75 15 28 H 0.30 15.57 8.31 -92.71 -0.77 14.80 15 Total: -1.00 -72.21 266.41 -1.40 -73.61 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -1.26 Total: 32.95 kcal Atomic # 6 Polarization: -49.54 SS G_CDS: 3.52 Total: -46.01 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -1.04 Total: -122.66 kcal Atomic # 8 Polarization: -115.13 SS G_CDS: -4.37 Total: -119.51 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: 139.20 SS G_CDS: -0.28 Total: 138.92 kcal Total: -72.21 -1.40 -73.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129352722.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.667 kcal (2) G-P(sol) polarization free energy of solvation -72.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds