Wall clock time and date at job start Mon Mar 30 2020 04:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 N 1.34554 * 126.40232 * 115.34746 * 3 2 1 5 5 C 1.30408 * 109.54938 * 179.97438 * 4 3 2 6 6 N 1.34849 * 109.74042 * 0.02562 * 5 4 3 7 7 C 1.46498 * 126.27150 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47005 * 264.97310 * 7 6 5 9 9 O 1.21291 * 119.99998 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99852 * 180.02562 * 8 7 6 11 11 C 1.37098 * 119.99824 * 180.02562 * 10 8 7 12 12 H 1.07996 * 120.00382 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99535 * 179.97438 * 11 10 8 14 14 N 1.31414 * 120.00436 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99566 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47289 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47258 * 120.00238 * 15 13 11 18 18 H 1.48507 * 109.47088 * 239.99897 * 15 13 11 19 19 C 1.37447 * 107.45897 * 359.97438 * 6 5 4 20 20 C 1.43194 * 126.97025 * 179.97438 * 19 6 5 21 21 N 3.89100 * 113.04525 * 295.35946 * 2 1 3 22 22 H 1.07997 * 125.13655 * 179.97438 * 5 4 3 23 23 H 1.09005 * 109.46784 * 24.97328 * 7 6 5 24 24 H 1.09002 * 109.46981 * 144.96738 * 7 6 5 25 25 H 0.96996 * 119.99828 * 359.97438 * 10 8 7 26 26 H 0.96999 * 119.99592 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3664 0.4646 -0.9787 5 6 4.6145 0.3038 -0.6368 6 7 4.6827 -0.2729 0.5802 7 6 5.9061 -0.6165 1.3092 8 6 6.2590 -2.0579 1.0468 9 8 5.5573 -2.7320 0.3227 10 7 7.3538 -2.5983 1.6178 11 6 7.6751 -3.9095 1.3787 12 1 7.0508 -4.5095 0.7333 13 6 8.8040 -4.4664 1.9669 14 7 9.5640 -3.7363 2.7520 15 14 9.2415 -6.2532 1.6418 16 1 8.2329 -6.8519 0.7311 17 1 10.5841 -6.3273 1.0116 18 1 9.2550 -7.0009 2.9248 19 6 3.3941 -0.4782 1.0121 20 6 2.9847 -1.0664 2.2518 21 7 2.6592 -1.5335 3.2355 22 1 5.4653 0.5887 -1.2380 23 1 6.7214 0.0242 0.9730 24 1 5.7458 -0.4702 2.3773 25 1 7.9147 -2.0594 2.1972 26 1 10.3519 -4.1253 3.1628 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156253780.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:33 Heat of formation + Delta-G solvation = 92.235141 kcal Electronic energy + Delta-G solvation = -16087.621484 eV Core-core repulsion = 13168.453361 eV Total energy + Delta-G solvation = -2919.168123 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.065 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.48327 -38.53744 -36.67009 -36.50736 -34.57068 -33.88424 -31.60639 -30.63275 -28.38941 -25.09375 -24.09873 -22.51730 -20.50117 -19.03736 -18.18386 -17.74544 -16.88435 -15.75508 -15.39135 -14.96978 -14.70362 -14.44760 -13.98522 -13.47414 -13.39732 -13.27007 -13.14763 -12.98222 -12.71765 -12.61387 -12.19110 -11.79730 -11.26986 -10.56308 -10.52182 -10.45973 -10.23248 -9.83416 -8.90117 -8.68306 -8.31356 -6.71177 -4.13366 0.70474 1.92903 2.23172 2.46471 2.71354 2.95953 3.03737 3.13400 3.19788 3.41127 3.55104 3.63295 3.66609 3.94817 4.46102 4.61855 4.70482 4.91626 5.05450 5.09665 5.69412 5.78670 5.86368 6.64671 7.27252 7.29069 7.37491 7.50738 7.69825 8.20994 8.85348 9.13207 9.60453 10.45016 Molecular weight = 245.07amu Principal moments of inertia in cm(-1) A = 0.037018 B = 0.005206 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.216523 B = 5376.782617 C = 5546.207390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C 0.301 3.699 3 C 0.128 3.872 4 N -0.456 5.456 5 C 0.248 3.752 6 N -0.397 5.397 7 C 0.081 3.919 8 C 0.408 3.592 9 O -0.577 6.577 10 N -0.541 5.541 11 C -0.305 4.305 12 H 0.108 0.892 13 C 0.029 3.971 14 N -0.891 5.891 15 Si 0.933 3.067 16 H -0.266 1.266 17 H -0.278 1.278 18 H -0.279 1.279 19 C 0.110 3.890 20 C 0.277 3.723 21 N -0.374 5.374 22 H 0.228 0.772 23 H 0.129 0.871 24 H 0.112 0.888 25 H 0.395 0.605 26 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.524 9.475 -2.454 9.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.076 5.076 2 C -0.016 4.016 3 C -0.010 4.010 4 N -0.173 5.173 5 C -0.036 4.036 6 N -0.074 5.074 7 C -0.045 4.045 8 C 0.192 3.808 9 O -0.462 6.462 10 N -0.177 5.177 11 C -0.435 4.435 12 H 0.125 0.875 13 C -0.174 4.174 14 N -0.531 5.531 15 Si 0.759 3.241 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.205 1.205 19 C -0.015 4.015 20 C -0.040 4.040 21 N -0.051 5.051 22 H 0.245 0.755 23 H 0.147 0.853 24 H 0.130 0.870 25 H 0.229 0.771 26 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.104 8.568 -1.994 9.707 hybrid contribution 1.779 -0.807 0.586 2.040 sum -2.325 7.761 -1.408 8.223 Atomic orbital electron populations 1.81251 1.10985 1.08486 1.06900 1.23766 0.90319 0.93591 0.93911 1.15562 0.86163 1.06969 0.92287 1.70319 1.00151 1.21480 1.25349 1.25099 0.96651 0.97612 0.84273 1.44888 1.04964 1.41562 1.16021 1.22047 0.84717 0.99340 0.98392 1.19628 0.85459 0.87926 0.87773 1.90644 1.52284 1.61825 1.41466 1.41786 1.21920 1.12297 1.41650 1.19793 1.09011 0.86340 1.28307 0.87455 1.25343 0.95670 1.00709 0.95712 1.69598 1.15924 1.37312 1.30242 0.85743 0.78634 0.81212 0.78505 1.18982 1.20403 1.20469 1.15912 0.84961 1.08583 0.92023 1.23825 0.95337 0.93577 0.91280 1.81323 1.05768 1.07956 1.10016 0.75536 0.85345 0.86976 0.77104 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.35 18.54 41.84 0.78 -5.57 15 2 C 0.30 4.44 15.65 -22.47 -0.35 4.09 15 3 C 0.13 1.79 6.94 -84.41 -0.59 1.20 15 4 N -0.46 -5.93 11.24 -11.99 -0.13 -6.06 15 5 C 0.25 2.66 12.47 -90.63 -1.13 1.53 15 6 N -0.40 -5.00 2.24 -116.58 -0.26 -5.26 15 7 C 0.08 0.99 6.40 -5.20 -0.03 0.96 15 8 C 0.41 7.89 7.85 -10.98 -0.09 7.80 15 9 O -0.58 -13.66 16.01 5.55 0.09 -13.57 15 10 N -0.54 -11.67 5.29 -10.96 -0.06 -11.73 15 11 C -0.31 -7.65 9.68 -14.93 -0.14 -7.79 15 12 H 0.11 2.88 7.16 -52.49 -0.38 2.50 15 13 C 0.03 0.71 5.50 -17.47 -0.10 0.62 15 14 N -0.89 -21.90 13.05 55.50 0.72 -21.18 15 15 Si 0.93 19.46 29.55 -169.99 -5.02 14.44 15 16 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 17 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15 19 C 0.11 1.57 6.84 -83.09 -0.57 1.00 15 20 C 0.28 4.35 15.19 -22.46 -0.34 4.01 15 21 N -0.37 -6.45 18.54 41.86 0.78 -5.68 15 22 H 0.23 1.38 8.06 -52.49 -0.42 0.96 15 23 H 0.13 1.01 8.13 -51.93 -0.42 0.59 15 24 H 0.11 1.21 8.00 -51.93 -0.42 0.79 15 25 H 0.40 7.91 7.90 -40.82 -0.32 7.59 15 26 H 0.28 6.43 8.31 -40.82 -0.34 6.09 15 LS Contribution 269.86 15.07 4.07 4.07 Total: -1.00 -31.04 269.86 -3.48 -34.52 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -1.09 Total: 2.62 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: -3.34 Total: 13.40 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 1.82 Total: -55.47 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.04 -3.48 -34.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156253780.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.754 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds