Wall clock time and date at job start Mon Mar 30 2020 04:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 N 1.34554 * 126.40232 * 115.34746 * 3 2 1 5 5 C 1.30408 * 109.54938 * 179.97438 * 4 3 2 6 6 N 1.34849 * 109.74042 * 0.02562 * 5 4 3 7 7 C 1.46498 * 126.27150 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47005 * 264.97310 * 7 6 5 9 9 O 1.21291 * 119.99998 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99852 * 180.02562 * 8 7 6 11 11 C 1.37098 * 119.99824 * 180.02562 * 10 8 7 12 12 H 1.07996 * 120.00382 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99535 * 179.97438 * 11 10 8 14 14 N 1.31414 * 120.00436 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99566 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47289 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47258 * 120.00238 * 15 13 11 18 18 H 1.48507 * 109.47088 * 239.99897 * 15 13 11 19 19 C 1.37447 * 107.45897 * 359.97438 * 6 5 4 20 20 C 1.43194 * 126.97025 * 179.97438 * 19 6 5 21 21 N 3.89100 * 113.04525 * 295.35946 * 2 1 3 22 22 H 1.07997 * 125.13655 * 179.97438 * 5 4 3 23 23 H 1.09005 * 109.46784 * 24.97328 * 7 6 5 24 24 H 1.09002 * 109.46981 * 144.96738 * 7 6 5 25 25 H 0.96996 * 119.99828 * 359.97438 * 10 8 7 26 26 H 0.96999 * 119.99592 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3664 0.4646 -0.9787 5 6 4.6145 0.3038 -0.6368 6 7 4.6827 -0.2729 0.5802 7 6 5.9061 -0.6165 1.3092 8 6 6.2590 -2.0579 1.0468 9 8 5.5573 -2.7320 0.3227 10 7 7.3538 -2.5983 1.6178 11 6 7.6751 -3.9095 1.3787 12 1 7.0508 -4.5095 0.7333 13 6 8.8040 -4.4664 1.9669 14 7 9.5640 -3.7363 2.7520 15 14 9.2415 -6.2532 1.6418 16 1 8.2329 -6.8519 0.7311 17 1 10.5841 -6.3273 1.0116 18 1 9.2550 -7.0009 2.9248 19 6 3.3941 -0.4782 1.0121 20 6 2.9847 -1.0664 2.2518 21 7 2.6592 -1.5335 3.2355 22 1 5.4653 0.5887 -1.2380 23 1 6.7214 0.0242 0.9730 24 1 5.7458 -0.4702 2.3773 25 1 7.9147 -2.0594 2.1972 26 1 10.3519 -4.1253 3.1628 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156253780.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:33 Heat of formation + Delta-G solvation = 71.653320 kcal Electronic energy + Delta-G solvation = -16088.513979 eV Core-core repulsion = 13168.453361 eV Total energy + Delta-G solvation = -2920.060618 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.065 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.49966 -40.12534 -37.91134 -37.74458 -36.16827 -35.14674 -33.35899 -31.69880 -29.60627 -26.72942 -25.28877 -23.49063 -21.92315 -20.42686 -19.73670 -18.83438 -18.27098 -16.98103 -16.74811 -16.26774 -16.00499 -15.76280 -15.57578 -14.76101 -14.64945 -14.63121 -14.33245 -14.22040 -14.02259 -13.81848 -13.54926 -13.37374 -12.90594 -12.45243 -12.14932 -11.58049 -11.52937 -11.37469 -10.39300 -10.08430 -9.81852 -8.52699 -6.00674 -0.42662 0.84922 1.23559 1.30028 1.33168 1.43402 1.53146 1.56667 1.86625 1.90003 2.25790 2.43253 2.50059 2.57170 3.07985 3.14609 3.75389 3.84176 4.00427 4.17663 4.27721 4.72189 4.84306 5.39050 5.72348 5.92557 6.07495 6.21505 6.48939 6.52239 7.06221 7.44083 7.97908 8.63384 Molecular weight = 245.07amu Principal moments of inertia in cm(-1) A = 0.037018 B = 0.005206 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.216523 B = 5376.782617 C = 5546.207390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.311 3.689 3 C 0.131 3.869 4 N -0.473 5.473 5 C 0.274 3.726 6 N -0.402 5.402 7 C 0.094 3.906 8 C 0.415 3.585 9 O -0.622 6.622 10 N -0.556 5.556 11 C -0.332 4.332 12 H 0.079 0.921 13 C -0.003 4.003 14 N -0.909 5.909 15 Si 0.984 3.016 16 H -0.276 1.276 17 H -0.268 1.268 18 H -0.276 1.276 19 C 0.093 3.907 20 C 0.290 3.710 21 N -0.411 5.411 22 H 0.278 0.722 23 H 0.188 0.812 24 H 0.133 0.867 25 H 0.403 0.597 26 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.336 10.876 -3.062 11.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.005 4.005 3 C -0.007 4.007 4 N -0.191 5.191 5 C -0.010 4.010 6 N -0.079 5.079 7 C -0.031 4.031 8 C 0.201 3.799 9 O -0.509 6.509 10 N -0.192 5.192 11 C -0.461 4.461 12 H 0.097 0.903 13 C -0.205 4.205 14 N -0.550 5.550 15 Si 0.809 3.191 16 H -0.200 1.200 17 H -0.193 1.193 18 H -0.201 1.201 19 C -0.032 4.032 20 C -0.026 4.026 21 N -0.089 5.089 22 H 0.293 0.707 23 H 0.205 0.795 24 H 0.151 0.849 25 H 0.238 0.762 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.918 9.993 -2.591 10.727 hybrid contribution 1.339 -1.172 0.672 1.902 sum -1.578 8.821 -1.918 9.164 Atomic orbital electron populations 1.81254 1.11764 1.09377 1.07771 1.23941 0.90575 0.92878 0.93144 1.15542 0.85727 1.06844 0.92585 1.70375 1.01078 1.22390 1.25218 1.26194 0.97152 0.94484 0.83128 1.45016 1.04254 1.41943 1.16727 1.22115 0.86162 0.94731 1.00076 1.20809 0.83399 0.90503 0.85144 1.90628 1.53254 1.64165 1.42864 1.41793 1.23220 1.11455 1.42745 1.19614 1.09405 0.88145 1.28963 0.90329 1.25907 0.95448 1.03574 0.95553 1.69629 1.16260 1.38282 1.30785 0.84990 0.78337 0.77664 0.78145 1.20048 1.19332 1.20144 1.15870 0.86097 1.09603 0.91614 1.24075 0.94472 0.92763 0.91287 1.81328 1.06846 1.09403 1.11285 0.70655 0.79489 0.84905 0.76227 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -13.39 18.54 19.01 0.35 -13.03 15 2 C 0.31 8.97 15.65 88.33 1.38 10.35 15 3 C 0.13 3.44 6.94 40.19 0.28 3.72 15 4 N -0.47 -10.93 11.24 -191.84 -2.16 -13.08 15 5 C 0.27 4.67 12.47 180.35 2.25 6.92 15 6 N -0.40 -8.69 2.24 -522.75 -1.17 -9.86 15 7 C 0.09 1.91 6.40 85.63 0.55 2.46 15 8 C 0.42 15.29 7.85 87.66 0.69 15.98 15 9 O -0.62 -29.01 16.01 -3.06 -0.05 -29.06 15 10 N -0.56 -23.45 5.29 -306.98 -1.62 -25.07 15 11 C -0.33 -16.74 9.68 84.04 0.81 -15.93 15 12 H 0.08 4.35 7.16 -2.91 -0.02 4.33 15 13 C 0.00 -0.16 5.50 84.93 0.47 0.30 15 14 N -0.91 -44.11 13.05 21.66 0.28 -43.83 15 15 Si 0.98 39.84 29.55 68.60 2.03 41.87 15 16 H -0.28 -11.47 7.11 99.48 0.71 -10.76 15 17 H -0.27 -10.35 7.11 99.48 0.71 -9.64 15 18 H -0.28 -10.95 7.11 99.48 0.71 -10.24 15 19 C 0.09 2.47 6.84 39.72 0.27 2.74 15 20 C 0.29 8.92 15.19 88.32 1.34 10.26 15 21 N -0.41 -14.19 18.54 19.01 0.35 -13.84 15 22 H 0.28 1.61 8.06 -2.91 -0.02 1.58 15 23 H 0.19 1.75 8.13 -2.38 -0.02 1.73 15 24 H 0.13 2.32 8.00 -2.39 -0.02 2.30 15 25 H 0.40 15.55 7.90 -92.71 -0.73 14.81 15 26 H 0.28 12.79 8.31 -92.71 -0.77 12.02 15 Total: -1.00 -69.56 269.86 6.59 -62.97 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 0.54 Total: 6.13 kcal Atomic # 6 Polarization: 28.77 SS G_CDS: 8.04 Total: 36.81 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -3.97 Total: -118.72 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.05 Total: -29.06 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -69.56 6.59 -62.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156253780.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.625 kcal (2) G-P(sol) polarization free energy of solvation -69.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds