Wall clock time and date at job start Mon Mar 30 2020 04:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31065 * 1 3 3 Si 1.86798 * 120.00204 * 2 1 4 4 H 1.48501 * 109.47124 * 240.00032 * 3 2 1 5 5 H 1.48504 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47327 * 120.00177 * 3 2 1 7 7 C 1.39751 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00113 * 163.72193 * 7 2 1 9 9 C 1.40951 * 119.99750 * 343.72856 * 7 2 1 10 10 C 1.39283 * 125.81562 * 148.02175 * 9 7 2 11 11 N 1.35763 * 126.94755 * 359.92228 * 10 9 7 12 12 C 1.39565 * 120.00263 * 174.19993 * 11 10 9 13 13 C 1.38985 * 120.08046 * 321.15503 * 12 11 10 14 14 C 1.38088 * 119.91689 * 179.78925 * 13 12 11 15 15 C 1.38301 * 120.07918 * 0.48564 * 14 13 12 16 16 C 1.38316 * 120.16421 * 359.74348 * 15 14 13 17 17 C 1.38072 * 120.07881 * 0.02676 * 16 15 14 18 18 C 1.51144 * 106.10642 * 179.97438 * 10 9 7 19 19 O 1.45328 * 106.41514 * 359.77690 * 18 10 9 20 20 C 1.34391 * 108.84663 * 0.37822 * 19 18 10 21 21 O 1.21547 * 124.87177 * 179.87625 * 20 19 18 22 22 H 0.97004 * 119.99625 * 359.97438 * 1 2 3 23 23 H 0.97001 * 119.99994 * 354.20731 * 11 10 9 24 24 H 1.08003 * 120.04162 * 359.97438 * 13 12 11 25 25 H 1.08000 * 119.95607 * 180.22873 * 14 13 12 26 26 H 1.07999 * 119.92100 * 179.72536 * 15 14 13 27 27 H 1.08001 * 119.95625 * 180.02562 * 16 15 14 28 28 H 1.08008 * 120.03520 * 179.97438 * 17 16 15 29 29 H 1.09000 * 110.07252 * 119.23990 * 18 10 9 30 30 H 1.09004 * 110.06741 * 240.75769 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2447 1.6177 0.0000 4 1 3.0985 1.6963 -1.2125 5 1 1.2797 2.7465 0.0006 6 1 3.0985 1.6963 1.2124 7 6 2.0094 -1.2103 0.0005 8 1 3.0569 -1.2291 -0.2616 9 6 1.3470 -2.4063 0.3431 10 6 1.6319 -3.6707 -0.1670 11 7 2.5868 -3.9866 -1.0788 12 6 2.8295 -5.3228 -1.4008 13 6 2.7972 -6.2954 -0.4085 14 6 3.0334 -7.6170 -0.7316 15 6 3.3119 -7.9719 -2.0390 16 6 3.3496 -7.0060 -3.0283 17 6 3.1097 -5.6832 -2.7135 18 6 0.6622 -4.6197 0.4989 19 8 -0.1528 -3.8140 1.3926 20 6 0.2388 -2.5318 1.2996 21 8 -0.2503 -1.6090 1.9214 22 1 -0.4850 0.8401 0.0004 23 1 3.1006 -3.2837 -1.5065 24 1 2.5846 -6.0183 0.6135 25 1 3.0048 -8.3738 0.0384 26 1 3.5007 -9.0057 -2.2880 27 1 3.5670 -7.2869 -4.0482 28 1 3.1397 -4.9295 -3.4866 29 1 0.0356 -5.1018 -0.2515 30 1 1.2070 -5.3712 1.0705 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215987301.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:03 Heat of formation + Delta-G solvation = -29.909131 kcal Electronic energy + Delta-G solvation = -16989.268624 eV Core-core repulsion = 14136.051520 eV Total energy + Delta-G solvation = -2853.217104 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.95533 -38.83804 -36.01816 -35.30537 -33.56562 -30.90926 -30.52687 -28.21373 -27.38272 -24.69690 -22.28874 -22.06739 -20.06563 -19.55086 -17.33423 -16.78771 -16.31734 -15.81829 -15.45033 -14.92018 -14.44907 -14.15024 -13.83631 -13.29888 -13.12724 -12.64628 -12.46113 -12.26038 -12.04007 -11.35758 -11.21785 -11.16448 -10.99338 -10.83927 -10.49632 -10.17826 -9.57030 -9.20079 -8.77653 -8.63199 -8.17315 -6.95328 -6.63770 -4.19494 1.68194 1.73337 2.64425 3.06161 3.09322 3.13119 3.92484 4.08382 4.17300 4.31343 4.43530 5.13321 5.22486 5.25112 5.43143 5.51870 5.73279 5.85699 5.90026 6.03452 6.06065 6.26798 6.37203 6.76365 6.78382 6.88767 7.08642 7.20980 7.27367 7.86924 8.00451 8.40250 8.46818 8.67556 8.78713 9.14943 10.20444 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.030166 B = 0.006732 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.962939 B = 4158.383988 C = 4871.941085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.429 4.429 8 H 0.082 0.918 9 C -0.038 4.038 10 C -0.136 4.136 11 N -0.617 5.617 12 C 0.197 3.803 13 C -0.185 4.185 14 C -0.085 4.085 15 C -0.182 4.182 16 C -0.085 4.085 17 C -0.183 4.183 18 C 0.122 3.878 19 O -0.358 6.358 20 C 0.507 3.493 21 O -0.456 6.456 22 H 0.284 0.716 23 H 0.407 0.593 24 H 0.126 0.874 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.077 0.923 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.649 -9.124 -4.328 11.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.149 4.149 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.458 4.458 8 H 0.100 0.900 9 C -0.046 4.046 10 C -0.237 4.237 11 N -0.236 5.236 12 C 0.094 3.906 13 C -0.206 4.206 14 C -0.104 4.104 15 C -0.202 4.202 16 C -0.104 4.104 17 C -0.205 4.205 18 C 0.047 3.953 19 O -0.275 6.275 20 C 0.351 3.649 21 O -0.340 6.340 22 H 0.095 0.905 23 H 0.244 0.756 24 H 0.143 0.857 25 H 0.133 0.867 26 H 0.129 0.871 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.095 0.905 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.865 -8.613 -3.774 10.588 hybrid contribution 0.602 1.006 -0.287 1.207 sum 5.466 -7.607 -4.061 10.210 Atomic orbital electron populations 1.69817 1.07616 1.29957 1.31152 1.25869 0.94735 1.01303 0.92973 0.86280 0.79947 0.80261 0.79689 1.19147 1.20287 1.18904 1.18601 0.96689 0.90016 1.40517 0.90036 1.19143 0.96254 0.92757 0.96446 1.19243 1.02095 0.95927 1.06441 1.39727 1.37556 1.03364 1.43002 1.17845 0.95314 0.84978 0.92451 1.21179 1.07505 0.93093 0.98870 1.20879 0.97889 0.95374 0.96234 1.20825 1.07089 0.98824 0.93492 1.20817 0.98371 0.92569 0.98675 1.20861 1.08540 0.96596 0.94509 1.22040 0.90758 0.91406 0.91112 1.87057 1.57642 1.22207 1.60635 1.21348 0.81892 0.80127 0.81550 1.90738 1.58078 1.38005 1.47216 0.90525 0.75577 0.85678 0.86698 0.87073 0.86769 0.86439 0.90469 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.79 10.99 55.54 0.61 -20.18 16 2 C 0.07 1.87 5.11 -17.31 -0.09 1.78 16 3 Si 0.91 19.05 29.59 -169.99 -5.03 14.02 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.43 -11.02 8.98 -37.99 -0.34 -11.37 16 8 H 0.08 1.95 7.89 -52.49 -0.41 1.53 16 9 C -0.04 -0.96 5.66 -104.96 -0.59 -1.56 16 10 C -0.14 -2.98 6.89 -80.25 -0.55 -3.53 16 11 N -0.62 -11.72 5.35 -5.92 -0.03 -11.76 16 12 C 0.20 3.31 6.19 -83.78 -0.52 2.79 16 13 C -0.18 -2.89 8.40 -39.36 -0.33 -3.22 16 14 C -0.08 -1.14 10.04 -39.61 -0.40 -1.54 16 15 C -0.18 -2.31 10.04 -39.53 -0.40 -2.70 16 16 C -0.09 -1.11 10.04 -39.61 -0.40 -1.51 16 17 C -0.18 -2.71 9.97 -39.36 -0.39 -3.10 16 18 C 0.12 2.47 6.53 36.22 0.24 2.71 16 19 O -0.36 -8.60 11.14 -39.31 -0.44 -9.04 16 20 C 0.51 13.72 8.03 34.25 0.27 14.00 16 21 O -0.46 -13.52 15.67 -18.98 -0.30 -13.82 16 22 H 0.28 7.18 8.30 -40.82 -0.34 6.84 16 23 H 0.41 7.47 8.62 -40.82 -0.35 7.12 16 24 H 0.13 1.98 5.40 -52.48 -0.28 1.70 16 25 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 26 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 27 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.08 1.37 5.51 -51.93 -0.29 1.08 16 LS Contribution 266.03 15.07 4.01 4.01 Total: -1.00 -29.28 266.03 -7.26 -36.54 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -2.58 Total: 7.46 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -3.50 Total: -7.25 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.58 Total: -31.93 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.74 Total: -22.86 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.28 -7.26 -36.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215987301.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.630 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds