Wall clock time and date at job start Mon Mar 30 2020 04:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31065 * 1 3 3 Si 1.86798 * 120.00204 * 2 1 4 4 H 1.48501 * 109.47124 * 240.00032 * 3 2 1 5 5 H 1.48504 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47327 * 120.00177 * 3 2 1 7 7 C 1.39751 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00113 * 163.72193 * 7 2 1 9 9 C 1.40951 * 119.99750 * 343.72856 * 7 2 1 10 10 C 1.39283 * 125.81562 * 148.02175 * 9 7 2 11 11 N 1.35763 * 126.94755 * 359.92228 * 10 9 7 12 12 C 1.39565 * 120.00263 * 174.19993 * 11 10 9 13 13 C 1.38985 * 120.08046 * 321.15503 * 12 11 10 14 14 C 1.38088 * 119.91689 * 179.78925 * 13 12 11 15 15 C 1.38301 * 120.07918 * 0.48564 * 14 13 12 16 16 C 1.38316 * 120.16421 * 359.74348 * 15 14 13 17 17 C 1.38072 * 120.07881 * 0.02676 * 16 15 14 18 18 C 1.51144 * 106.10642 * 179.97438 * 10 9 7 19 19 O 1.45328 * 106.41514 * 359.77690 * 18 10 9 20 20 C 1.34391 * 108.84663 * 0.37822 * 19 18 10 21 21 O 1.21547 * 124.87177 * 179.87625 * 20 19 18 22 22 H 0.97004 * 119.99625 * 359.97438 * 1 2 3 23 23 H 0.97001 * 119.99994 * 354.20731 * 11 10 9 24 24 H 1.08003 * 120.04162 * 359.97438 * 13 12 11 25 25 H 1.08000 * 119.95607 * 180.22873 * 14 13 12 26 26 H 1.07999 * 119.92100 * 179.72536 * 15 14 13 27 27 H 1.08001 * 119.95625 * 180.02562 * 16 15 14 28 28 H 1.08008 * 120.03520 * 179.97438 * 17 16 15 29 29 H 1.09000 * 110.07252 * 119.23990 * 18 10 9 30 30 H 1.09004 * 110.06741 * 240.75769 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2447 1.6177 0.0000 4 1 3.0985 1.6963 -1.2125 5 1 1.2797 2.7465 0.0006 6 1 3.0985 1.6963 1.2124 7 6 2.0094 -1.2103 0.0005 8 1 3.0569 -1.2291 -0.2616 9 6 1.3470 -2.4063 0.3431 10 6 1.6319 -3.6707 -0.1670 11 7 2.5868 -3.9866 -1.0788 12 6 2.8295 -5.3228 -1.4008 13 6 2.7972 -6.2954 -0.4085 14 6 3.0334 -7.6170 -0.7316 15 6 3.3119 -7.9719 -2.0390 16 6 3.3496 -7.0060 -3.0283 17 6 3.1097 -5.6832 -2.7135 18 6 0.6622 -4.6197 0.4989 19 8 -0.1528 -3.8140 1.3926 20 6 0.2388 -2.5318 1.2996 21 8 -0.2503 -1.6090 1.9214 22 1 -0.4850 0.8401 0.0004 23 1 3.1006 -3.2837 -1.5065 24 1 2.5846 -6.0183 0.6135 25 1 3.0048 -8.3738 0.0384 26 1 3.5007 -9.0057 -2.2880 27 1 3.5670 -7.2869 -4.0482 28 1 3.1397 -4.9295 -3.4866 29 1 0.0356 -5.1018 -0.2515 30 1 1.2070 -5.3712 1.0705 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215987301.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:03 Heat of formation + Delta-G solvation = -47.424010 kcal Electronic energy + Delta-G solvation = -16990.028126 eV Core-core repulsion = 14136.051520 eV Total energy + Delta-G solvation = -2853.976606 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.76898 -40.19479 -37.93040 -36.92444 -35.28358 -32.49747 -31.76051 -29.62530 -29.09579 -26.54483 -23.53766 -23.40364 -21.85561 -21.15646 -19.10535 -18.17946 -18.05971 -17.43875 -17.02191 -16.64015 -15.96647 -15.61018 -15.34207 -14.77171 -14.45131 -14.42543 -13.95506 -13.81981 -13.68033 -13.01334 -12.91373 -12.64251 -12.40270 -12.26958 -11.93972 -11.83416 -11.22689 -10.94133 -10.73611 -9.75872 -9.65333 -8.66606 -8.33081 -6.01827 0.30735 0.59923 0.98317 1.37458 1.45275 1.50591 2.22438 2.39336 2.48920 2.65051 3.03138 3.28923 3.78913 4.01366 4.08973 4.21201 4.33529 4.39144 4.52060 4.70201 4.78391 5.02063 5.23897 5.29441 5.34102 5.63709 5.65132 5.77296 5.99982 6.10088 6.25998 6.63918 6.87328 6.92715 7.04447 7.22751 8.48363 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.030166 B = 0.006732 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.962939 B = 4158.383988 C = 4871.941085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.026 3.974 3 Si 0.979 3.021 4 H -0.250 1.250 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.468 4.468 8 H 0.085 0.915 9 C -0.104 4.104 10 C -0.057 4.057 11 N -0.625 5.625 12 C 0.162 3.838 13 C -0.190 4.190 14 C -0.088 4.088 15 C -0.163 4.163 16 C -0.088 4.088 17 C -0.180 4.180 18 C 0.112 3.888 19 O -0.365 6.365 20 C 0.495 3.505 21 O -0.501 6.501 22 H 0.279 0.721 23 H 0.410 0.590 24 H 0.121 0.879 25 H 0.144 0.856 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.125 0.875 29 H 0.103 0.897 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.617 -12.990 -6.053 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.189 4.189 3 Si 0.801 3.199 4 H -0.174 1.174 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.499 4.499 8 H 0.103 0.897 9 C -0.113 4.113 10 C -0.161 4.161 11 N -0.246 5.246 12 C 0.064 3.936 13 C -0.211 4.211 14 C -0.107 4.107 15 C -0.182 4.182 16 C -0.106 4.106 17 C -0.202 4.202 18 C 0.037 3.963 19 O -0.282 6.282 20 C 0.342 3.658 21 O -0.390 6.390 22 H 0.089 0.911 23 H 0.246 0.754 24 H 0.138 0.862 25 H 0.162 0.838 26 H 0.163 0.837 27 H 0.164 0.836 28 H 0.143 0.857 29 H 0.121 0.879 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.894 -12.596 -5.556 15.397 hybrid contribution 0.183 1.443 0.031 1.454 sum 7.077 -11.154 -5.525 14.318 Atomic orbital electron populations 1.69927 1.09208 1.30014 1.35829 1.26681 0.95286 1.04539 0.92400 0.85299 0.78516 0.76213 0.79880 1.17367 1.20376 1.19288 1.18698 0.96876 0.90813 1.43464 0.89685 1.19235 0.98488 0.94393 0.99179 1.19746 0.99333 0.95229 1.01767 1.39887 1.37209 1.04977 1.42544 1.18128 0.97866 0.83804 0.93837 1.21305 1.07395 0.94038 0.98409 1.21250 0.96893 0.94880 0.97635 1.21354 1.03521 1.00508 0.92824 1.21244 0.97223 0.91584 1.00585 1.21110 1.07181 0.98004 0.93865 1.22524 0.90795 0.91080 0.91901 1.87013 1.58347 1.21484 1.61324 1.21708 0.82352 0.80389 0.81395 1.90681 1.59926 1.39391 1.48979 0.91144 0.75353 0.86173 0.83820 0.83652 0.83626 0.85714 0.87941 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.21 10.99 21.81 0.24 -47.97 16 2 C 0.03 1.39 5.11 85.17 0.44 1.82 16 3 Si 0.98 41.28 29.59 68.60 2.03 43.31 16 4 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 5 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.47 -25.21 8.98 23.30 0.21 -25.00 16 8 H 0.09 4.24 7.89 -2.91 -0.02 4.22 16 9 C -0.10 -5.50 5.66 -20.09 -0.11 -5.61 16 10 C -0.06 -2.45 6.89 42.34 0.29 -2.15 16 11 N -0.62 -22.75 5.35 -172.64 -0.92 -23.68 16 12 C 0.16 4.92 6.19 38.27 0.24 5.15 16 13 C -0.19 -5.17 8.40 22.41 0.19 -4.98 16 14 C -0.09 -1.86 10.04 22.25 0.22 -1.64 16 15 C -0.16 -3.07 10.04 22.30 0.22 -2.85 16 16 C -0.09 -1.78 10.04 22.25 0.22 -1.56 16 17 C -0.18 -4.62 9.97 22.41 0.22 -4.39 16 18 C 0.11 4.30 6.53 71.38 0.47 4.76 16 19 O -0.36 -17.66 11.14 -53.35 -0.59 -18.25 16 20 C 0.49 28.00 8.03 70.10 0.56 28.57 16 21 O -0.50 -31.74 15.67 19.38 0.30 -31.44 16 22 H 0.28 15.30 8.30 -92.71 -0.77 14.53 16 23 H 0.41 14.73 8.62 -92.71 -0.80 13.93 16 24 H 0.12 3.35 5.40 -2.91 -0.02 3.33 16 25 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 26 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 27 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 28 H 0.12 3.00 8.06 -2.91 -0.02 2.98 16 29 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 30 H 0.12 3.72 5.51 -2.38 -0.01 3.71 16 Total: -1.00 -68.40 266.03 4.61 -63.79 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.39 Total: 22.12 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 3.17 Total: -7.89 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -0.68 Total: -71.65 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -0.29 Total: -49.69 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -68.40 4.61 -63.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215987301.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.369 kcal (2) G-P(sol) polarization free energy of solvation -68.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds