Wall clock time and date at job start Mon Mar 30 2020 04:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35559 * 116.99926 * 2 1 4 4 C 1.41641 * 120.93968 * 270.29008 * 3 2 1 5 5 C 1.40997 * 120.74288 * 359.97174 * 4 3 2 6 6 H 1.07992 * 119.99835 * 142.05258 * 5 4 3 7 7 C 1.39927 * 119.99771 * 322.05930 * 5 4 3 8 8 N 1.30907 * 119.99936 * 339.38982 * 7 5 4 9 9 Si 1.86794 * 119.99657 * 159.39518 * 7 5 4 10 10 H 1.48503 * 109.47300 * 59.99816 * 9 7 5 11 11 H 1.48501 * 109.47133 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47599 * 299.99432 * 9 7 5 13 13 C 1.41348 * 118.51399 * 180.25816 * 4 3 2 14 14 O 1.35431 * 119.85223 * 179.72028 * 13 4 3 15 15 N 1.32032 * 120.29841 * 359.44295 * 13 4 3 16 16 C 1.32172 * 122.05816 * 0.27515 * 15 13 4 17 17 C 1.38215 * 121.50888 * 0.02562 * 16 15 13 18 18 C 1.50706 * 120.24799 * 179.97438 * 17 16 15 19 19 F 1.39895 * 109.47023 * 30.00168 * 18 17 16 20 20 F 1.39896 * 109.46824 * 150.00308 * 18 17 16 21 21 H 1.08992 * 109.47028 * 300.00676 * 1 2 3 22 22 H 1.09003 * 109.46677 * 60.00327 * 1 2 3 23 23 H 1.08998 * 109.46965 * 179.97438 * 1 2 3 24 24 H 0.97001 * 119.99783 * 179.97438 * 8 7 5 25 25 H 0.96708 * 113.99599 * 267.51999 * 14 13 4 26 26 H 1.08001 * 119.24425 * 179.97438 * 16 15 13 27 27 H 1.08997 * 109.46582 * 269.99728 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 6 2.3696 1.8595 -1.2149 5 6 2.0609 1.2661 -2.4561 6 1 1.7231 1.8792 -3.2785 7 6 2.1920 -0.1170 -2.6222 8 7 2.9570 -0.8039 -1.8119 9 14 1.2756 -0.9832 -4.0003 10 1 1.7026 -0.4227 -5.3075 11 1 1.5813 -2.4359 -3.9615 12 1 -0.1852 -0.7796 -3.8279 13 6 3.0159 3.1151 -1.1551 14 8 3.3443 3.7595 -2.3001 15 7 3.2961 3.6652 0.0121 16 6 2.9954 3.0752 1.1559 17 6 2.3685 1.8438 1.1907 18 6 2.0392 1.1966 2.5113 19 9 1.8037 2.1875 3.4703 20 9 0.8955 0.4036 2.3695 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 3.0476 -1.7628 -1.9268 25 1 4.2393 3.5714 -2.6144 26 1 3.2459 3.5662 2.0847 27 1 2.8757 0.5744 2.8294 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238377608.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:47 Heat of formation + Delta-G solvation = -165.226950 kcal Electronic energy + Delta-G solvation = -18471.364009 eV Core-core repulsion = 15058.049554 eV Total energy + Delta-G solvation = -3413.314455 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.065 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.90327 -47.92110 -40.96873 -38.79453 -37.21186 -35.61346 -32.59340 -31.97741 -28.20452 -27.03902 -26.60177 -23.57441 -22.64716 -19.70281 -19.37445 -18.59905 -18.33884 -17.77963 -17.45748 -17.06225 -16.73817 -15.91126 -15.69462 -15.20478 -14.95411 -14.66848 -14.37677 -13.97239 -13.82124 -13.55680 -13.18868 -12.96863 -12.76355 -12.53255 -12.32220 -12.19021 -11.73447 -11.16726 -10.55534 -10.10162 -9.92664 -9.50430 -8.74051 -6.45027 0.25391 0.68275 1.39192 1.45543 1.49468 2.18944 2.56050 2.89878 3.05286 3.09378 3.31186 3.69009 3.80934 4.12365 4.30148 4.59524 4.61382 4.71276 4.84154 4.89579 5.16058 5.17323 5.49429 5.67434 6.13481 6.43508 6.71764 6.97031 7.13919 7.41831 8.26474 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.023689 B = 0.011612 C = 0.008394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.696086 B = 2410.722345 C = 3334.992431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.306 6.306 3 C 0.091 3.909 4 C 0.019 3.981 5 C -0.470 4.470 6 H 0.079 0.921 7 C 0.058 3.942 8 N -0.773 5.773 9 Si 0.966 3.034 10 H -0.261 1.261 11 H -0.265 1.265 12 H -0.261 1.261 13 C 0.183 3.817 14 O -0.484 6.484 15 N -0.501 5.501 16 C 0.025 3.975 17 C -0.228 4.228 18 C 0.331 3.669 19 F -0.205 7.205 20 F -0.202 7.202 21 H 0.053 0.947 22 H 0.025 0.975 23 H 0.099 0.901 24 H 0.293 0.707 25 H 0.390 0.610 26 H 0.165 0.835 27 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.786 -2.778 3.521 4.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.221 6.221 3 C 0.039 3.961 4 C 0.013 3.987 5 C -0.497 4.497 6 H 0.098 0.902 7 C -0.164 4.164 8 N -0.395 5.395 9 Si 0.787 3.213 10 H -0.185 1.185 11 H -0.189 1.189 12 H -0.185 1.185 13 C 0.002 3.998 14 O -0.290 6.290 15 N -0.219 5.219 16 C -0.133 4.133 17 C -0.232 4.232 18 C 0.277 3.723 19 F -0.186 7.186 20 F -0.183 7.183 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.117 0.883 24 H 0.104 0.896 25 H 0.247 0.753 26 H 0.182 0.818 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.780 -2.163 3.595 4.558 hybrid contribution -0.384 -0.981 -0.730 1.281 sum -2.165 -3.144 2.865 4.772 Atomic orbital electron populations 1.23096 0.80270 1.03007 0.99859 1.85948 1.18761 1.23602 1.93795 1.18614 0.99140 0.87935 0.90396 1.19035 0.93567 0.91135 0.94968 1.19302 1.40204 0.93223 0.97019 0.90250 1.26427 0.93611 0.97211 0.99120 1.69730 1.25828 1.09946 1.33992 0.85486 0.79773 0.77600 0.78480 1.18542 1.18925 1.18520 1.19390 1.02766 0.93170 0.84520 1.84586 1.37244 1.70306 1.36894 1.66646 1.20194 1.36266 0.98821 1.21565 1.04258 0.92534 0.94918 1.21684 1.08095 0.98668 0.94760 1.20194 0.86263 0.81828 0.83997 1.92939 1.95653 1.64400 1.65611 1.92909 1.54585 1.74810 1.95986 0.92868 0.95619 0.88281 0.89620 0.75338 0.81771 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.25 10.23 113.37 1.16 2.41 15 2 O -0.31 -14.04 6.32 -88.65 -0.56 -14.60 15 3 C 0.09 4.40 5.18 23.25 0.12 4.52 15 4 C 0.02 1.00 5.40 -21.00 -0.11 0.88 15 5 C -0.47 -23.89 8.47 23.36 0.20 -23.69 15 6 H 0.08 4.06 7.91 -2.91 -0.02 4.04 15 7 C 0.06 2.73 4.45 85.24 0.38 3.10 15 8 N -0.77 -37.51 11.24 21.83 0.25 -37.27 15 9 Si 0.97 35.99 29.61 68.60 2.03 38.02 15 10 H -0.26 -9.52 7.11 99.48 0.71 -8.82 15 11 H -0.27 -9.31 7.11 99.48 0.71 -8.60 15 12 H -0.26 -9.59 7.11 99.48 0.71 -8.89 15 13 C 0.18 9.21 7.80 85.43 0.67 9.88 15 14 O -0.48 -22.27 13.01 -87.27 -1.14 -23.41 15 15 N -0.50 -24.17 10.36 -307.26 -3.18 -27.36 15 16 C 0.02 1.07 10.54 84.64 0.89 1.97 15 17 C -0.23 -9.82 5.75 -19.73 -0.11 -9.93 15 18 C 0.33 11.46 5.59 71.24 0.40 11.86 15 19 F -0.20 -6.78 16.48 44.97 0.74 -6.04 15 20 F -0.20 -7.33 12.69 44.97 0.57 -6.76 15 21 H 0.05 1.97 5.99 -2.39 -0.01 1.96 15 22 H 0.03 1.03 8.14 -2.39 -0.02 1.01 15 23 H 0.10 3.27 8.14 -2.39 -0.02 3.25 15 24 H 0.29 12.99 8.30 -92.71 -0.77 12.22 15 25 H 0.39 14.46 9.06 -74.05 -0.67 13.79 15 26 H 0.17 6.02 7.58 -2.91 -0.02 5.99 15 27 H 0.15 4.10 8.14 -2.39 -0.02 4.08 15 Total: -1.00 -59.23 247.70 2.86 -56.37 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.56 Total: 20.04 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 3.59 Total: 1.00 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -2.94 Total: -64.62 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -1.70 Total: -38.01 kcal Atomic # 9 Polarization: -14.11 SS G_CDS: 1.31 Total: -12.80 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Total: -59.23 2.86 -56.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238377608.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.853 kcal (2) G-P(sol) polarization free energy of solvation -59.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds