Wall clock time and date at job start Mon Mar 30 2020 04:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35552 * 116.99982 * 2 1 4 4 C 1.41910 * 120.93613 * 270.22056 * 3 2 1 5 5 C 1.41108 * 120.64290 * 0.02980 * 4 3 2 6 6 H 1.07998 * 120.00641 * 330.47639 * 5 4 3 7 7 C 1.39884 * 119.99871 * 150.48310 * 5 4 3 8 8 N 1.30918 * 120.00003 * 161.85929 * 7 5 4 9 9 Si 1.86799 * 119.99586 * 341.85996 * 7 5 4 10 10 H 1.48500 * 109.47276 * 95.40454 * 9 7 5 11 11 H 1.48500 * 109.46885 * 215.39664 * 9 7 5 12 12 H 1.48496 * 109.47554 * 335.40062 * 9 7 5 13 13 C 1.40604 * 118.70493 * 180.25139 * 4 3 2 14 14 N 1.31495 * 120.51433 * 359.77599 * 13 4 3 15 15 C 1.32673 * 122.05914 * 359.97438 * 14 13 4 16 16 O 1.35530 * 119.36291 * 179.97438 * 15 14 13 17 17 C 1.38446 * 120.92940 * 90.00150 * 3 2 1 18 18 C 1.50704 * 120.34251 * 0.02562 * 17 3 2 19 19 F 1.39900 * 109.47414 * 59.71742 * 18 17 3 20 20 F 1.39901 * 109.46855 * 299.71468 * 18 17 3 21 21 H 1.09000 * 109.46771 * 299.99537 * 1 2 3 22 22 H 1.09001 * 109.46930 * 59.98971 * 1 2 3 23 23 H 1.08994 * 109.47018 * 180.02562 * 1 2 3 24 24 H 0.97003 * 119.99493 * 180.02562 * 8 7 5 25 25 H 1.08000 * 119.74355 * 179.75558 * 13 4 3 26 26 H 0.96697 * 114.00115 * 269.97666 * 16 15 14 27 27 H 1.09002 * 109.47119 * 179.71961 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0445 1.2078 0.0000 4 6 2.3715 1.8599 -1.2172 5 6 2.0618 1.2640 -2.4582 6 1 2.0300 0.1882 -2.5478 7 6 1.7960 2.0667 -3.5726 8 7 1.8596 1.5568 -4.7767 9 14 1.3505 3.8661 -3.3425 10 1 2.5704 4.7005 -3.4864 11 1 0.3544 4.2645 -4.3693 12 1 0.7724 4.0638 -1.9891 13 6 3.0143 3.1092 -1.1625 14 7 3.3017 3.6621 -0.0045 15 6 3.0031 3.0774 1.1484 16 8 3.3251 3.6964 2.3103 17 6 2.3676 1.8418 1.1876 18 6 2.0393 1.1961 2.5091 19 9 2.6880 -0.0402 2.5981 20 9 0.6566 1.0051 2.6040 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.6757 2.1135 -5.5494 25 1 3.2745 3.6185 -2.0787 26 1 4.2035 3.4710 2.6458 27 1 2.3735 1.8412 3.3217 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238377978.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:39 Heat of formation + Delta-G solvation = -174.679195 kcal Electronic energy + Delta-G solvation = -18314.553441 eV Core-core repulsion = 14900.829106 eV Total energy + Delta-G solvation = -3413.724335 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.065 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.93881 -47.93870 -41.29063 -39.15931 -37.63317 -35.74623 -33.10416 -32.49352 -28.39925 -27.06900 -26.91283 -23.41916 -23.21371 -20.01378 -19.79657 -18.99184 -18.32278 -17.95654 -17.48738 -17.04201 -16.94231 -16.24252 -16.06744 -15.53905 -15.11428 -14.69550 -14.56302 -14.32474 -14.09646 -13.89986 -13.40702 -13.12076 -12.80898 -12.64106 -12.57758 -12.00011 -11.90717 -11.47606 -10.81037 -10.43535 -10.31425 -9.81911 -9.13041 -6.69471 0.00912 0.26774 1.20109 1.30093 1.37509 1.96244 2.24624 2.74085 2.79522 2.91763 3.17576 3.36083 3.70193 4.03233 4.07844 4.43405 4.49642 4.54531 4.57602 4.74295 4.78742 5.03439 5.13185 5.53992 5.94047 6.11357 6.43225 6.65768 6.82350 7.20296 7.92480 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.026928 B = 0.010463 C = 0.008482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.562260 B = 2675.475133 C = 3300.390565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.335 6.335 3 C 0.062 3.938 4 C 0.000 4.000 5 C -0.428 4.428 6 H 0.073 0.927 7 C 0.057 3.943 8 N -0.807 5.807 9 Si 0.950 3.050 10 H -0.245 1.245 11 H -0.260 1.260 12 H -0.267 1.267 13 C 0.004 3.996 14 N -0.481 5.481 15 C 0.208 3.792 16 O -0.477 6.477 17 C -0.215 4.215 18 C 0.328 3.672 19 F -0.206 7.206 20 F -0.207 7.207 21 H 0.056 0.944 22 H 0.036 0.964 23 H 0.110 0.890 24 H 0.305 0.695 25 H 0.148 0.852 26 H 0.403 0.597 27 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.973 1.875 8.496 8.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.252 6.252 3 C 0.010 3.990 4 C -0.005 4.005 5 C -0.456 4.456 6 H 0.091 0.909 7 C -0.163 4.163 8 N -0.431 5.431 9 Si 0.772 3.228 10 H -0.170 1.170 11 H -0.185 1.185 12 H -0.191 1.191 13 C -0.157 4.157 14 N -0.197 5.197 15 C 0.029 3.971 16 O -0.285 6.285 17 C -0.220 4.220 18 C 0.274 3.726 19 F -0.187 7.187 20 F -0.188 7.188 21 H 0.075 0.925 22 H 0.054 0.946 23 H 0.129 0.871 24 H 0.117 0.883 25 H 0.165 0.835 26 H 0.260 0.740 27 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.078 2.649 8.221 8.704 hybrid contribution -0.299 -0.569 -0.453 0.787 sum -1.377 2.079 7.768 8.159 Atomic orbital electron populations 1.23222 0.78538 1.04062 1.00755 1.85848 1.20847 1.24318 1.94137 1.18667 1.00440 0.88720 0.91127 1.19066 0.93992 0.93589 0.93871 1.19256 1.39049 0.95918 0.91358 0.90918 1.26769 0.91557 1.04348 0.93661 1.69690 1.31967 1.41224 1.00171 0.85716 0.80333 0.77287 0.79422 1.16957 1.18500 1.19103 1.22409 1.03231 0.95951 0.94106 1.66627 1.18877 1.35614 0.98623 1.17992 1.04612 0.89142 0.85381 1.84735 1.40042 1.70423 1.33289 1.21559 1.08613 0.96434 0.95374 1.20380 0.73669 0.81692 0.96890 1.92974 1.81147 1.47325 1.97264 1.92891 1.32967 1.95872 1.97092 0.92538 0.94559 0.87137 0.88338 0.83525 0.73957 0.82344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 10.81 113.37 1.23 2.28 15 2 O -0.33 -15.19 9.09 -88.58 -0.81 -16.00 15 3 C 0.06 2.90 5.69 23.23 0.13 3.03 15 4 C 0.00 0.02 5.13 -21.09 -0.11 -0.09 15 5 C -0.43 -22.29 9.25 23.37 0.22 -22.08 15 6 H 0.07 4.14 7.95 -2.91 -0.02 4.12 15 7 C 0.06 2.77 5.41 85.23 0.46 3.23 15 8 N -0.81 -39.63 13.93 21.82 0.30 -39.33 15 9 Si 0.95 38.97 24.52 68.60 1.68 40.65 15 10 H -0.24 -9.44 6.72 99.48 0.67 -8.77 15 11 H -0.26 -9.73 7.11 99.48 0.71 -9.03 15 12 H -0.27 -11.78 6.85 99.48 0.68 -11.10 15 13 C 0.00 0.21 8.36 85.32 0.71 0.92 15 14 N -0.48 -21.73 10.36 -306.82 -3.18 -24.91 15 15 C 0.21 8.41 7.72 84.75 0.65 9.06 15 16 O -0.48 -14.98 12.30 -88.34 -1.09 -16.07 15 17 C -0.22 -8.85 5.40 -19.63 -0.11 -8.96 15 18 C 0.33 10.98 5.11 71.24 0.36 11.34 15 19 F -0.21 -7.36 17.02 44.97 0.77 -6.59 15 20 F -0.21 -7.20 14.49 44.97 0.65 -6.55 15 21 H 0.06 2.01 5.74 -2.39 -0.01 1.99 15 22 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 23 H 0.11 3.41 8.14 -2.39 -0.02 3.39 15 24 H 0.31 13.19 8.30 -92.71 -0.77 12.43 15 25 H 0.15 6.66 4.73 -2.91 -0.01 6.65 15 26 H 0.40 8.27 9.06 -74.06 -0.67 7.60 15 27 H 0.16 3.98 6.99 -2.39 -0.02 3.97 15 Total: -1.00 -59.82 244.31 2.40 -57.42 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.51 Total: 12.63 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 3.55 Total: -1.25 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -2.87 Total: -64.24 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -1.89 Total: -32.07 kcal Atomic # 9 Polarization: -14.56 SS G_CDS: 1.42 Total: -13.14 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 1.68 Total: 40.65 kcal Total: -59.82 2.40 -57.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238377978.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.257 kcal (2) G-P(sol) polarization free energy of solvation -59.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds