Wall clock time and date at job start Mon Mar 30 2020 04:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35701 * 116.99951 * 2 1 4 4 C 1.39261 * 120.24132 * 0.02562 * 3 2 1 5 5 C 1.38605 * 118.50541 * 179.97438 * 4 3 2 6 6 O 1.35607 * 120.53489 * 179.97438 * 5 4 3 7 7 C 1.41453 * 118.92366 * 359.97438 * 5 4 3 8 8 C 1.40882 * 119.81420 * 179.97438 * 7 5 4 9 9 H 1.07999 * 120.00463 * 0.02562 * 8 7 5 10 10 C 1.40012 * 119.99524 * 179.97438 * 8 7 5 11 11 N 1.30804 * 120.00247 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99636 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47522 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46781 * 120.00546 * 12 10 8 15 15 H 1.48498 * 109.46999 * 239.99878 * 12 10 8 16 16 N 1.33700 * 120.36005 * 359.97438 * 7 5 4 17 17 C 1.31272 * 121.62439 * 0.02766 * 16 7 5 18 18 C 1.50694 * 119.46891 * 179.97438 * 17 16 7 19 19 F 1.39905 * 109.47253 * 119.99224 * 18 17 16 20 20 F 1.39904 * 109.47341 * 239.99556 * 18 17 16 21 21 H 1.09001 * 109.46597 * 59.99831 * 1 2 3 22 22 H 1.08995 * 109.46854 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46846 * 299.99957 * 1 2 3 24 24 H 1.08003 * 120.74639 * 0.24863 * 4 3 2 25 25 H 0.96701 * 114.00234 * 89.99885 * 6 5 4 26 26 H 0.96998 * 120.00369 * 179.97438 * 11 10 8 27 27 H 1.09000 * 109.47039 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2915 2.3802 0.0005 5 6 1.9579 3.5956 0.0011 6 8 1.2650 4.7612 0.0011 7 6 3.3724 3.6002 0.0016 8 6 4.0689 4.8249 0.0016 9 1 3.5228 5.7567 0.0016 10 6 5.4690 4.8339 0.0026 11 7 6.1303 3.7054 0.0031 12 14 6.3924 6.4577 0.0034 13 1 5.4202 7.5801 0.0033 14 1 7.2448 6.5418 1.2165 15 1 7.2466 6.5419 -1.2085 16 7 4.0520 2.4488 0.0021 17 6 3.4392 1.2879 0.0016 18 6 4.2534 0.0198 0.0016 19 9 3.9501 -0.7291 1.1437 20 9 3.9508 -0.7287 -1.1409 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.2122 2.3423 0.0050 25 1 1.0636 5.0991 0.8845 26 1 7.1003 3.7116 0.0035 27 1 5.3144 0.2694 0.0016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238390890.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:11 Heat of formation + Delta-G solvation = -169.739027 kcal Electronic energy + Delta-G solvation = -17961.535154 eV Core-core repulsion = 14548.025042 eV Total energy + Delta-G solvation = -3413.510113 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.065 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.82709 -47.83620 -41.05713 -39.08773 -37.57531 -35.45460 -32.08615 -31.76065 -28.87482 -27.77650 -26.08191 -23.44599 -22.75051 -19.69120 -19.49385 -18.65849 -18.13695 -17.97542 -17.42943 -17.10696 -16.55200 -16.37128 -15.41343 -15.31511 -14.78507 -14.50504 -14.37700 -14.24807 -13.82282 -13.64978 -13.15680 -12.92341 -12.64482 -12.47777 -12.17213 -12.12361 -11.96544 -11.40439 -11.09755 -10.16570 -9.91415 -9.29466 -8.42869 -6.45527 0.36215 0.80499 1.43884 1.50172 1.58969 2.22516 2.62093 2.64016 2.78987 3.32437 3.45738 3.69849 3.77938 4.22806 4.27622 4.36268 4.43221 4.54616 4.69651 4.85494 5.00321 5.22404 5.31631 5.57363 6.13950 6.41137 6.59340 6.77424 7.13880 7.77166 8.37140 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.025808 B = 0.009058 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.660769 B = 3090.379542 C = 3992.687818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.333 6.333 3 C -0.024 4.024 4 C -0.158 4.158 5 C -0.018 4.018 6 O -0.490 6.490 7 C 0.182 3.818 8 C -0.443 4.443 9 H 0.097 0.903 10 C 0.023 3.977 11 N -0.754 5.754 12 Si 0.991 3.009 13 H -0.254 1.254 14 H -0.265 1.265 15 H -0.268 1.268 16 N -0.446 5.446 17 C 0.027 3.973 18 C 0.340 3.660 19 F -0.204 7.204 20 F -0.205 7.205 21 H 0.051 0.949 22 H 0.118 0.882 23 H 0.055 0.945 24 H 0.148 0.852 25 H 0.386 0.614 26 H 0.284 0.716 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.361 -1.591 1.697 4.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.247 6.247 3 C -0.074 4.074 4 C -0.183 4.183 5 C -0.068 4.068 6 O -0.299 6.299 7 C 0.055 3.945 8 C -0.474 4.474 9 H 0.115 0.885 10 C -0.199 4.199 11 N -0.377 5.377 12 Si 0.811 3.189 13 H -0.178 1.178 14 H -0.189 1.189 15 H -0.193 1.193 16 N -0.162 5.162 17 C -0.118 4.118 18 C 0.285 3.715 19 F -0.185 7.185 20 F -0.186 7.186 21 H 0.070 0.930 22 H 0.136 0.864 23 H 0.073 0.927 24 H 0.166 0.834 25 H 0.242 0.758 26 H 0.095 0.905 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.175 -1.930 1.089 3.872 hybrid contribution -0.911 0.562 0.465 1.167 sum -4.086 -1.367 1.553 4.580 Atomic orbital electron populations 1.23144 0.77778 1.04791 1.01183 1.85945 1.22364 1.25953 1.90449 1.19388 0.91939 0.85056 1.10999 1.21600 1.00288 0.91111 1.05320 1.19344 0.90281 0.85410 1.11751 1.84650 1.74687 1.36969 1.33596 1.19251 0.89023 0.92340 0.93852 1.19807 0.92273 0.92610 1.42702 0.88457 1.26988 0.98638 1.01713 0.92527 1.70153 1.09287 1.29300 1.28963 0.85017 0.78086 0.77000 0.78805 1.17778 1.18931 1.19303 1.68410 1.35966 0.95605 1.16218 1.21413 0.89030 0.95472 1.05879 1.19987 0.99785 0.81126 0.70573 1.92927 1.95430 1.78495 1.51671 1.92927 1.95453 1.78509 1.51731 0.93014 0.86371 0.92652 0.83439 0.75821 0.90488 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.82 113.37 1.11 1.85 15 2 O -0.33 -13.50 9.38 -90.21 -0.85 -14.35 15 3 C -0.02 -1.12 6.59 22.85 0.15 -0.97 15 4 C -0.16 -6.83 9.06 22.60 0.20 -6.63 15 5 C -0.02 -0.84 6.76 23.15 0.16 -0.68 15 6 O -0.49 -20.08 12.63 -89.18 -1.13 -21.21 15 7 C 0.18 9.70 6.56 40.30 0.26 9.96 15 8 C -0.44 -22.86 8.94 23.35 0.21 -22.65 15 9 H 0.10 4.74 7.31 -2.91 -0.02 4.72 15 10 C 0.02 1.13 5.50 85.28 0.47 1.60 15 11 N -0.75 -38.39 11.45 21.84 0.25 -38.14 15 12 Si 0.99 36.27 29.56 68.60 2.03 38.30 15 13 H -0.25 -9.00 7.11 99.48 0.71 -8.29 15 14 H -0.26 -9.28 7.11 99.48 0.71 -8.57 15 15 H -0.27 -9.58 7.11 99.48 0.71 -8.87 15 16 N -0.45 -24.07 7.72 -176.37 -1.36 -25.43 15 17 C 0.03 1.33 6.30 42.98 0.27 1.60 15 18 C 0.34 14.76 5.21 71.23 0.37 15.13 15 19 F -0.20 -8.67 16.95 44.97 0.76 -7.91 15 20 F -0.20 -8.81 16.95 44.97 0.76 -8.04 15 21 H 0.05 1.39 7.69 -2.39 -0.02 1.37 15 22 H 0.12 2.59 8.14 -2.39 -0.02 2.57 15 23 H 0.05 1.44 7.68 -2.39 -0.02 1.42 15 24 H 0.15 5.28 6.41 -2.91 -0.02 5.26 15 25 H 0.39 11.94 9.06 -74.06 -0.67 11.27 15 26 H 0.28 12.93 8.30 -92.71 -0.77 12.16 15 27 H 0.13 5.46 8.10 -2.39 -0.02 5.44 15 Total: -1.00 -63.32 253.38 4.24 -59.08 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.57 Total: 18.48 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 3.21 Total: -0.78 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: -1.11 Total: -63.57 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.97 Total: -35.56 kcal Atomic # 9 Polarization: -17.47 SS G_CDS: 1.52 Total: -15.95 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Total: -63.32 4.24 -59.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238390890.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.660 kcal (2) G-P(sol) polarization free energy of solvation -63.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds