Wall clock time and date at job start Mon Mar 30 2020 04:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35394 * 117.00314 * 2 1 4 4 N 1.32059 * 119.89945 * 5.32714 * 3 2 1 5 5 C 1.32500 * 121.67448 * 180.28677 * 4 3 2 6 6 O 1.35492 * 119.35441 * 179.71178 * 5 4 3 7 7 C 1.39445 * 121.28170 * 359.43436 * 5 4 3 8 8 C 1.50700 * 120.17356 * 180.25006 * 7 5 4 9 9 F 1.39904 * 109.46864 * 120.00189 * 8 7 5 10 10 F 1.39899 * 109.47665 * 240.00272 * 8 7 5 11 11 C 1.36713 * 119.65714 * 0.27773 * 7 5 4 12 12 C 1.41148 * 118.44492 * 0.02562 * 11 7 5 13 13 C 1.41020 * 120.62685 * 179.97438 * 12 11 7 14 14 H 1.08001 * 120.00444 * 152.96862 * 13 12 11 15 15 C 1.39879 * 120.00120 * 332.96917 * 13 12 11 16 16 N 1.30926 * 120.00410 * 162.90030 * 15 13 12 17 17 Si 1.86797 * 119.99830 * 342.89763 * 15 13 12 18 18 H 1.48507 * 109.47256 * 95.24628 * 17 15 13 19 19 H 1.48497 * 109.47711 * 215.24785 * 17 15 13 20 20 H 1.48504 * 109.47545 * 335.25108 * 17 15 13 21 21 H 1.09002 * 109.47206 * 184.01404 * 1 2 3 22 22 H 1.09006 * 109.46951 * 304.01211 * 1 2 3 23 23 H 1.08994 * 109.47513 * 64.01134 * 1 2 3 24 24 H 0.96696 * 113.99533 * 269.72770 * 6 5 4 25 25 H 1.09003 * 109.47275 * 0.02562 * 8 7 5 26 26 H 1.08007 * 120.77676 * 179.97438 * 11 7 5 27 27 H 0.96997 * 120.00472 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2063 0.0000 4 7 1.3270 2.3104 0.1063 5 6 1.8914 3.5092 0.1045 6 8 1.1103 4.6112 0.2103 7 6 3.2740 3.6583 0.0015 8 6 3.8900 5.0337 0.0076 9 9 4.7700 5.1457 1.0895 10 9 4.5907 5.2363 -1.1862 11 6 4.0678 2.5504 -0.1056 12 6 3.4524 1.2802 -0.1087 13 6 4.2271 0.1068 -0.2175 14 1 3.8641 -0.8206 0.2001 15 6 5.4657 0.1442 -0.8664 16 7 6.3282 -0.8244 -0.6871 17 14 5.8893 1.5760 -1.9888 18 1 6.6623 2.5900 -1.2274 19 1 6.7042 1.0866 -3.1296 20 1 4.6382 2.1901 -2.5016 21 1 -0.3634 -1.0252 0.0719 22 1 -0.3633 0.5749 0.8519 23 1 -0.3634 0.4503 -0.9237 24 1 0.8143 4.9664 -0.6389 25 1 3.1042 5.7834 0.0997 26 1 5.1407 2.6450 -0.1868 27 1 7.1869 -0.7987 -1.1373 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238394118.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:01 Heat of formation + Delta-G solvation = -175.440113 kcal Electronic energy + Delta-G solvation = -18021.135003 eV Core-core repulsion = 14607.377673 eV Total energy + Delta-G solvation = -3413.757331 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.065 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.96151 -47.95977 -41.40101 -39.25083 -37.55762 -35.72909 -33.64008 -32.38161 -28.50157 -27.34637 -26.31510 -24.16875 -22.62734 -20.12560 -19.80605 -18.83697 -18.32194 -18.10452 -17.86334 -17.35580 -16.72406 -16.33636 -15.80134 -15.24216 -14.96161 -14.91127 -14.37678 -14.33690 -14.24112 -13.86163 -13.51594 -13.03562 -12.87725 -12.68010 -12.41995 -12.10419 -11.76596 -11.76185 -11.45659 -10.55215 -10.43415 -9.47694 -9.08376 -6.57023 0.13760 0.38654 1.19590 1.27881 1.38000 1.97908 2.26880 2.36168 2.81856 2.94290 3.14697 3.29987 3.73778 3.99523 4.10275 4.27852 4.50134 4.53950 4.60119 4.77632 4.84792 5.04814 5.22326 5.47856 5.97873 6.12998 6.49952 6.56509 6.81357 7.14326 7.97689 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.014484 C = 0.008420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.265397 B = 1932.639626 C = 3324.437082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.317 6.317 3 C 0.252 3.748 4 N -0.531 5.531 5 C 0.233 3.767 6 O -0.476 6.476 7 C -0.210 4.210 8 C 0.321 3.679 9 F -0.212 7.212 10 F -0.211 7.211 11 C -0.171 4.171 12 C 0.017 3.983 13 C -0.430 4.430 14 H 0.075 0.925 15 C 0.052 3.948 16 N -0.817 5.817 17 Si 0.949 3.051 18 H -0.260 1.260 19 H -0.263 1.263 20 H -0.251 1.251 21 H 0.118 0.882 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.404 0.596 25 H 0.165 0.835 26 H 0.119 0.881 27 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 8.461 -2.579 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.224 6.224 3 C 0.067 3.933 4 N -0.264 5.264 5 C 0.058 3.942 6 O -0.284 6.284 7 C -0.214 4.214 8 C 0.267 3.733 9 F -0.193 7.193 10 F -0.193 7.193 11 C -0.195 4.195 12 C 0.012 3.988 13 C -0.459 4.459 14 H 0.093 0.907 15 C -0.166 4.166 16 N -0.442 5.442 17 Si 0.773 3.227 18 H -0.185 1.185 19 H -0.189 1.189 20 H -0.175 1.175 21 H 0.136 0.864 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.262 0.738 25 H 0.182 0.818 26 H 0.136 0.864 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.141 7.960 -1.935 10.238 hybrid contribution 1.052 0.221 -0.768 1.321 sum -5.089 8.181 -2.703 10.007 Atomic orbital electron populations 1.22951 0.76952 1.03973 1.01710 1.86169 1.23293 1.24357 1.88603 1.19776 0.88507 0.83597 1.01389 1.66302 1.42061 0.98813 1.19215 1.17645 0.85194 0.84480 1.06896 1.84732 1.69204 1.38438 1.35981 1.20665 0.94784 0.95682 1.10297 1.20550 0.85946 0.96253 0.70539 1.92957 1.72858 1.97120 1.56355 1.92954 1.82131 1.96022 1.48165 1.20596 0.98938 0.91475 1.08524 1.17803 0.89810 0.93996 0.97239 1.19268 1.00276 0.96009 1.30359 0.90704 1.26772 0.94187 0.99044 0.96624 1.69687 1.07098 1.32683 1.34688 0.85717 0.80103 0.78125 0.78793 1.18526 1.18904 1.17504 0.86401 0.93025 0.92859 0.73847 0.81845 0.86386 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.27 10.48 113.37 1.19 2.46 15 2 O -0.32 -14.15 9.80 -86.87 -0.85 -15.00 15 3 C 0.25 12.03 7.53 85.46 0.64 12.68 15 4 N -0.53 -23.17 9.16 -419.94 -3.85 -27.02 15 5 C 0.23 9.20 7.72 84.88 0.66 9.86 15 6 O -0.48 -14.33 12.29 -87.93 -1.08 -15.41 15 7 C -0.21 -8.59 5.37 -19.93 -0.11 -8.69 15 8 C 0.32 10.72 5.41 71.24 0.39 11.10 15 9 F -0.21 -7.72 17.26 44.97 0.78 -6.94 15 10 F -0.21 -7.38 17.25 44.97 0.78 -6.60 15 11 C -0.17 -8.06 6.68 22.63 0.15 -7.91 15 12 C 0.02 0.87 5.21 -21.08 -0.11 0.76 15 13 C -0.43 -23.36 9.25 23.35 0.22 -23.14 15 14 H 0.07 4.38 7.86 -2.91 -0.02 4.35 15 15 C 0.05 2.69 5.44 85.23 0.46 3.16 15 16 N -0.82 -42.36 13.93 21.82 0.30 -42.06 15 17 Si 0.95 41.31 24.42 68.60 1.68 42.99 15 18 H -0.26 -11.04 6.68 99.48 0.66 -10.38 15 19 H -0.26 -10.51 7.11 99.48 0.71 -9.80 15 20 H -0.25 -11.21 6.70 99.48 0.67 -10.54 15 21 H 0.12 2.96 8.14 -2.39 -0.02 2.94 15 22 H 0.05 1.66 7.92 -2.38 -0.02 1.64 15 23 H 0.05 1.64 8.14 -2.39 -0.02 1.62 15 24 H 0.40 7.74 9.06 -74.06 -0.67 7.07 15 25 H 0.16 3.98 6.98 -2.39 -0.02 3.96 15 26 H 0.12 5.63 4.34 -2.91 -0.01 5.62 15 27 H 0.30 13.91 8.30 -92.71 -0.77 13.14 15 Total: -1.00 -61.88 248.43 1.73 -60.15 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.49 Total: 9.63 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 3.49 Total: 0.26 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: -3.54 Total: -69.07 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.93 Total: -30.41 kcal Atomic # 9 Polarization: -15.10 SS G_CDS: 1.55 Total: -13.54 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.68 Total: 42.99 kcal Total: -61.88 1.73 -60.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238394118.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.285 kcal (2) G-P(sol) polarization free energy of solvation -61.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds