Wall clock time and date at job start Mon Mar 30 2020 04:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35765 * 116.99571 * 2 1 4 4 C 1.39243 * 120.31571 * 0.02562 * 3 2 1 5 5 N 1.31401 * 120.96435 * 180.02562 * 4 3 2 6 6 C 1.33736 * 121.68339 * 359.97438 * 5 4 3 7 7 C 1.41197 * 119.73033 * 179.72322 * 6 5 4 8 8 H 1.08000 * 119.99142 * 173.52341 * 7 6 5 9 9 C 1.39977 * 120.00444 * 353.52285 * 7 6 5 10 10 N 1.30786 * 120.00112 * 6.26024 * 9 7 6 11 11 Si 1.86801 * 120.00232 * 186.25948 * 9 7 6 12 12 H 1.48505 * 109.47116 * 94.98237 * 11 9 7 13 13 H 1.48493 * 109.47302 * 214.98478 * 11 9 7 14 14 H 1.48505 * 109.46982 * 334.98914 * 11 9 7 15 15 C 1.40633 * 120.52862 * 0.02562 * 6 5 4 16 16 C 1.50699 * 120.49984 * 179.97438 * 15 6 5 17 17 F 1.39906 * 109.46887 * 300.00238 * 16 15 6 18 18 F 1.39895 * 109.46918 * 59.99912 * 16 15 6 19 19 C 1.38409 * 119.00323 * 0.02562 * 15 6 5 20 20 O 1.35851 * 120.77441 * 179.97438 * 19 15 6 21 21 H 1.09005 * 109.46388 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47210 * 299.99737 * 1 2 3 23 23 H 1.08999 * 109.46947 * 60.00483 * 1 2 3 24 24 H 1.08007 * 119.51901 * 0.02562 * 4 3 2 25 25 H 0.97000 * 120.00123 * 180.02562 * 10 9 7 26 26 H 1.08996 * 109.47394 * 180.02562 * 16 15 6 27 27 H 0.96698 * 113.99484 * 270.01962 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2933 2.3816 0.0005 5 7 1.8764 3.5591 0.0000 6 6 3.2080 3.6835 -0.0005 7 6 3.7911 4.9694 -0.0069 8 1 4.8606 5.0778 0.0981 9 6 2.9833 6.1036 -0.1495 10 7 1.6811 5.9827 -0.1536 11 14 3.7652 7.7901 -0.3337 12 1 3.8813 8.1271 -1.7754 13 1 2.9197 8.8046 0.3452 14 1 5.1164 7.7792 0.2824 15 6 4.0319 2.5438 -0.0011 16 6 5.5323 2.6847 -0.0022 17 9 5.9340 3.3850 -1.1449 18 9 5.9358 3.3850 1.1397 19 6 3.4441 1.2908 -0.0016 20 8 4.2056 0.1658 -0.0027 21 1 -0.3632 -1.0278 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.2148 2.3219 0.0014 25 1 1.1213 6.7686 -0.2528 26 1 5.9902 1.6956 -0.0030 27 1 4.4259 -0.1591 -0.8864 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238403843.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:04 Heat of formation + Delta-G solvation = -147.844670 kcal Electronic energy + Delta-G solvation = -18057.616532 eV Core-core repulsion = 14645.055830 eV Total energy + Delta-G solvation = -3412.560702 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.065 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.95924 -45.91644 -39.38398 -37.09795 -36.44272 -33.49313 -30.92545 -29.38713 -27.32327 -25.65890 -24.66496 -21.85988 -20.70994 -18.47333 -17.28782 -16.98524 -16.47464 -16.15104 -15.30418 -15.16186 -15.06632 -14.87359 -14.24372 -13.39378 -13.05212 -12.86705 -12.65943 -12.33631 -12.10766 -11.73221 -11.52546 -11.34057 -11.26238 -10.84243 -10.60721 -10.45396 -10.28471 -9.68079 -9.32393 -8.33422 -7.91041 -7.41095 -6.65329 -4.65580 2.24746 2.55990 3.03528 3.08411 3.10081 3.86157 4.11969 4.47867 4.77907 4.89773 5.33468 5.48394 5.60479 5.63638 5.65972 5.83129 5.95592 6.14959 6.25755 6.56097 6.83334 6.97579 7.07247 7.40480 7.96627 8.09467 8.25811 8.52141 8.68281 9.73680 10.09073 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.023179 B = 0.010229 C = 0.007448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.675627 B = 2736.759111 C = 3758.582296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C -0.112 4.112 4 C 0.095 3.905 5 N -0.454 5.454 6 C 0.265 3.735 7 C -0.404 4.404 8 H 0.095 0.905 9 C 0.066 3.934 10 N -0.708 5.708 11 Si 0.913 3.087 12 H -0.266 1.266 13 H -0.274 1.274 14 H -0.257 1.257 15 C -0.342 4.342 16 C 0.342 3.658 17 F -0.209 7.209 18 F -0.207 7.207 19 C 0.180 3.820 20 O -0.496 6.496 21 H 0.084 0.916 22 H 0.044 0.956 23 H 0.043 0.957 24 H 0.133 0.867 25 H 0.277 0.723 26 H 0.098 0.902 27 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.523 -4.694 -1.703 5.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.236 6.236 3 C -0.160 4.160 4 C -0.075 4.075 5 N -0.167 5.167 6 C 0.143 3.857 7 C -0.433 4.433 8 H 0.113 0.887 9 C -0.161 4.161 10 N -0.329 5.329 11 Si 0.736 3.264 12 H -0.191 1.191 13 H -0.199 1.199 14 H -0.180 1.180 15 C -0.348 4.348 16 C 0.288 3.712 17 F -0.190 7.190 18 F -0.189 7.189 19 C 0.129 3.871 20 O -0.305 6.305 21 H 0.102 0.898 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.150 0.850 25 H 0.088 0.912 26 H 0.115 0.885 27 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -0.061 -3.859 -1.092 4.011 hybrid contribution 0.458 0.070 -0.596 0.755 sum 0.397 -3.789 -1.689 4.167 Atomic orbital electron populations 1.22757 0.80763 1.02050 1.00476 1.85856 1.19120 1.27050 1.91594 1.19901 0.91435 0.85451 1.19228 1.22952 0.99133 0.87927 0.97480 1.68775 1.10680 1.21650 1.15611 1.18143 0.86879 0.91621 0.89077 1.19849 0.95709 0.89082 1.38685 0.88671 1.26155 0.94710 1.01761 0.93455 1.70131 1.04539 1.31307 1.26906 0.86196 0.80498 0.80160 0.79499 1.19147 1.19880 1.18047 1.20888 0.94359 0.93600 1.25974 1.19586 0.91521 0.89160 0.70928 1.92939 1.91884 1.82425 1.51788 1.92930 1.91812 1.82221 1.51895 1.17363 0.85977 0.84420 0.99353 1.84725 1.71088 1.42002 1.32662 0.89758 0.93741 0.93805 0.84992 0.91182 0.88452 0.76576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 9.81 101.05 0.99 1.53 15 2 O -0.32 -6.46 10.33 -31.88 -0.33 -6.79 15 3 C -0.11 -2.54 6.75 -38.50 -0.26 -2.80 15 4 C 0.10 2.23 10.21 -17.36 -0.18 2.05 15 5 N -0.45 -12.17 7.87 -11.03 -0.09 -12.26 15 6 C 0.27 7.16 6.53 -85.01 -0.56 6.60 15 7 C -0.40 -10.79 8.15 -37.81 -0.31 -11.09 15 8 H 0.10 2.50 5.53 -52.49 -0.29 2.21 15 9 C 0.07 1.65 5.49 -17.35 -0.10 1.56 15 10 N -0.71 -18.26 11.48 55.55 0.64 -17.62 15 11 Si 0.91 18.60 29.56 -169.99 -5.03 13.57 15 12 H -0.27 -5.34 7.11 56.52 0.40 -4.93 15 13 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 14 H -0.26 -5.23 7.11 56.52 0.40 -4.83 15 15 C -0.34 -8.28 5.44 -103.66 -0.56 -8.85 15 16 C 0.34 7.36 4.91 36.01 0.18 7.53 15 17 F -0.21 -4.60 16.15 2.25 0.04 -4.56 15 18 F -0.21 -4.72 15.93 2.25 0.04 -4.69 15 19 C 0.18 4.09 6.75 -38.81 -0.26 3.83 15 20 O -0.50 -9.49 12.23 -32.15 -0.39 -9.89 15 21 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.04 0.65 7.67 -51.93 -0.40 0.25 15 23 H 0.04 0.62 7.67 -51.93 -0.40 0.22 15 24 H 0.13 2.70 6.30 -52.48 -0.33 2.37 15 25 H 0.28 6.40 8.29 -40.82 -0.34 6.07 15 26 H 0.10 1.75 7.08 -51.93 -0.37 1.39 15 27 H 0.38 5.34 9.06 45.56 0.41 5.76 15 LS Contribution 248.66 15.07 3.75 3.75 Total: -1.00 -30.66 248.66 -3.36 -34.02 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -0.93 Total: 4.10 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.05 Total: 0.36 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.55 Total: -29.88 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.72 Total: -16.68 kcal Atomic # 9 Polarization: -9.32 SS G_CDS: 0.07 Total: -9.25 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.66 -3.36 -34.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238403843.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.821 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds