Wall clock time and date at job start Mon Mar 30 2020 04:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35765 * 116.99571 * 2 1 4 4 C 1.39243 * 120.31571 * 0.02562 * 3 2 1 5 5 N 1.31401 * 120.96435 * 180.02562 * 4 3 2 6 6 C 1.33736 * 121.68339 * 359.97438 * 5 4 3 7 7 C 1.41197 * 119.73033 * 179.72322 * 6 5 4 8 8 H 1.08000 * 119.99142 * 173.52341 * 7 6 5 9 9 C 1.39977 * 120.00444 * 353.52285 * 7 6 5 10 10 N 1.30786 * 120.00112 * 6.26024 * 9 7 6 11 11 Si 1.86801 * 120.00232 * 186.25948 * 9 7 6 12 12 H 1.48505 * 109.47116 * 94.98237 * 11 9 7 13 13 H 1.48493 * 109.47302 * 214.98478 * 11 9 7 14 14 H 1.48505 * 109.46982 * 334.98914 * 11 9 7 15 15 C 1.40633 * 120.52862 * 0.02562 * 6 5 4 16 16 C 1.50699 * 120.49984 * 179.97438 * 15 6 5 17 17 F 1.39906 * 109.46887 * 300.00238 * 16 15 6 18 18 F 1.39895 * 109.46918 * 59.99912 * 16 15 6 19 19 C 1.38409 * 119.00323 * 0.02562 * 15 6 5 20 20 O 1.35851 * 120.77441 * 179.97438 * 19 15 6 21 21 H 1.09005 * 109.46388 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47210 * 299.99737 * 1 2 3 23 23 H 1.08999 * 109.46947 * 60.00483 * 1 2 3 24 24 H 1.08007 * 119.51901 * 0.02562 * 4 3 2 25 25 H 0.97000 * 120.00123 * 180.02562 * 10 9 7 26 26 H 1.08996 * 109.47394 * 180.02562 * 16 15 6 27 27 H 0.96698 * 113.99484 * 270.01962 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2933 2.3816 0.0005 5 7 1.8764 3.5591 0.0000 6 6 3.2080 3.6835 -0.0005 7 6 3.7911 4.9694 -0.0069 8 1 4.8606 5.0778 0.0981 9 6 2.9833 6.1036 -0.1495 10 7 1.6811 5.9827 -0.1536 11 14 3.7652 7.7901 -0.3337 12 1 3.8813 8.1271 -1.7754 13 1 2.9197 8.8046 0.3452 14 1 5.1164 7.7792 0.2824 15 6 4.0319 2.5438 -0.0011 16 6 5.5323 2.6847 -0.0022 17 9 5.9340 3.3850 -1.1449 18 9 5.9358 3.3850 1.1397 19 6 3.4441 1.2908 -0.0016 20 8 4.2056 0.1658 -0.0027 21 1 -0.3632 -1.0278 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.2148 2.3219 0.0014 25 1 1.1213 6.7686 -0.2528 26 1 5.9902 1.6956 -0.0030 27 1 4.4259 -0.1591 -0.8864 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238403843.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:04 Heat of formation + Delta-G solvation = -169.810360 kcal Electronic energy + Delta-G solvation = -18058.569036 eV Core-core repulsion = 14645.055830 eV Total energy + Delta-G solvation = -3413.513206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.065 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.68650 -47.65420 -41.10124 -38.69061 -38.13045 -35.32159 -32.72205 -31.13817 -28.88092 -27.27893 -26.41164 -23.65983 -22.43751 -20.21149 -19.00246 -18.63800 -18.18704 -17.88041 -17.02187 -16.85948 -16.78222 -16.41712 -15.81741 -14.97659 -14.67458 -14.56928 -14.37644 -14.08233 -13.89107 -13.44517 -13.23019 -12.94512 -12.79587 -12.47937 -12.15914 -12.09119 -11.94733 -11.37273 -11.10257 -10.14845 -9.74394 -9.19536 -8.47117 -6.56335 0.44282 0.78036 1.38160 1.47843 1.52648 2.19119 2.59869 2.66514 3.16767 3.27301 3.59629 3.67489 3.95720 4.14307 4.37627 4.42536 4.48611 4.55251 4.76039 4.82350 5.09592 5.19498 5.26339 5.64163 6.11080 6.41604 6.53362 6.75953 6.96616 7.88845 8.30433 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.023179 B = 0.010229 C = 0.007448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.675627 B = 2736.759111 C = 3758.582296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.330 6.330 3 C -0.105 4.105 4 C 0.082 3.918 5 N -0.490 5.490 6 C 0.237 3.763 7 C -0.441 4.441 8 H 0.089 0.911 9 C 0.025 3.975 10 N -0.743 5.743 11 Si 0.983 3.017 12 H -0.260 1.260 13 H -0.260 1.260 14 H -0.260 1.260 15 C -0.357 4.357 16 C 0.341 3.659 17 F -0.214 7.214 18 F -0.217 7.217 19 C 0.180 3.820 20 O -0.491 6.491 21 H 0.121 0.879 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.156 0.844 25 H 0.285 0.715 26 H 0.140 0.860 27 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 -5.571 -1.964 5.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.245 6.245 3 C -0.153 4.153 4 C -0.086 4.086 5 N -0.204 5.204 6 C 0.114 3.886 7 C -0.471 4.471 8 H 0.107 0.893 9 C -0.198 4.198 10 N -0.365 5.365 11 Si 0.803 3.197 12 H -0.184 1.184 13 H -0.185 1.185 14 H -0.183 1.183 15 C -0.364 4.364 16 C 0.288 3.712 17 F -0.195 7.195 18 F -0.199 7.199 19 C 0.128 3.872 20 O -0.303 6.303 21 H 0.139 0.861 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.173 0.827 25 H 0.096 0.904 26 H 0.157 0.843 27 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -0.020 -4.786 -1.368 4.978 hybrid contribution 0.357 0.084 -0.518 0.635 sum 0.338 -4.702 -1.886 5.077 Atomic orbital electron populations 1.23124 0.78026 1.04745 1.01055 1.85849 1.21888 1.25521 1.91245 1.20009 0.91804 0.86161 1.17332 1.23342 1.00384 0.87654 0.97183 1.68705 1.11087 1.23373 1.17220 1.18537 0.87585 0.92787 0.89711 1.20018 0.95696 0.90198 1.41143 0.89315 1.26979 0.95098 1.05103 0.92649 1.70183 1.05700 1.32730 1.27866 0.85170 0.79349 0.75515 0.79675 1.18444 1.18459 1.18328 1.21200 0.95803 0.93690 1.25660 1.19910 0.90460 0.90532 0.70325 1.92921 1.91760 1.82804 1.52052 1.92903 1.91750 1.82705 1.52522 1.17390 0.86487 0.84903 0.98439 1.84659 1.70377 1.40473 1.34820 0.86095 0.93343 0.92977 0.82716 0.90437 0.84289 0.73651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.81 113.37 1.11 1.80 15 2 O -0.33 -12.45 10.33 -78.61 -0.81 -13.26 15 3 C -0.10 -4.59 6.75 22.97 0.16 -4.44 15 4 C 0.08 3.83 10.21 85.00 0.87 4.70 15 5 N -0.49 -26.68 7.87 -188.82 -1.49 -28.17 15 6 C 0.24 13.01 6.53 40.16 0.26 13.27 15 7 C -0.44 -24.09 8.15 23.42 0.19 -23.90 15 8 H 0.09 4.77 5.53 -2.91 -0.02 4.76 15 9 C 0.02 1.27 5.49 85.27 0.47 1.74 15 10 N -0.74 -39.05 11.48 21.83 0.25 -38.79 15 11 Si 0.98 38.47 29.56 68.60 2.03 40.50 15 12 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 13 H -0.26 -9.50 7.11 99.48 0.71 -8.79 15 14 H -0.26 -10.12 7.11 99.48 0.71 -9.41 15 15 C -0.36 -17.21 5.44 -19.24 -0.10 -17.32 15 16 C 0.34 14.36 4.91 71.24 0.35 14.70 15 17 F -0.21 -9.31 16.15 44.97 0.73 -8.59 15 18 F -0.22 -9.85 15.93 44.97 0.72 -9.14 15 19 C 0.18 7.91 6.75 22.77 0.15 8.06 15 20 O -0.49 -17.42 12.23 -79.56 -0.97 -18.40 15 21 H 0.12 2.41 8.14 -2.38 -0.02 2.39 15 22 H 0.05 1.29 7.67 -2.39 -0.02 1.27 15 23 H 0.05 1.34 7.67 -2.39 -0.02 1.33 15 24 H 0.16 6.20 6.30 -2.91 -0.02 6.18 15 25 H 0.28 13.35 8.29 -92.71 -0.77 12.58 15 26 H 0.14 4.65 7.08 -2.39 -0.02 4.63 15 27 H 0.41 10.03 9.06 -74.06 -0.67 9.36 15 Total: -1.00 -66.47 248.66 4.48 -61.99 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.57 Total: 15.23 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 3.46 Total: -1.38 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: -1.24 Total: -66.96 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -1.78 Total: -31.66 kcal Atomic # 9 Polarization: -19.17 SS G_CDS: 1.44 Total: -17.72 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -66.47 4.48 -61.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238403843.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.821 kcal (2) G-P(sol) polarization free energy of solvation -66.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds