Wall clock time and date at job start Mon Mar 30 2020 04:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35451 * 117.00303 * 2 1 4 4 N 1.32021 * 119.81721 * 355.06533 * 3 2 1 5 5 C 1.32004 * 121.94477 * 180.02562 * 4 3 2 6 6 C 1.39163 * 121.33133 * 359.97438 * 5 4 3 7 7 O 1.35983 * 120.26401 * 180.02562 * 6 5 4 8 8 C 1.38408 * 119.47315 * 359.80679 * 6 5 4 9 9 C 1.50691 * 120.89161 * 180.24107 * 8 6 5 10 10 F 1.39899 * 109.47497 * 23.22756 * 9 8 6 11 11 F 1.39905 * 109.47414 * 143.23065 * 9 8 6 12 12 C 1.40970 * 118.21937 * 0.43468 * 8 6 5 13 13 C 1.41121 * 120.66473 * 179.80192 * 12 8 6 14 14 H 1.07998 * 119.99474 * 320.18522 * 13 12 8 15 15 C 1.39926 * 120.00287 * 140.18184 * 13 12 8 16 16 N 1.30863 * 119.99843 * 335.11481 * 15 13 12 17 17 Si 1.86795 * 120.00184 * 155.10967 * 15 13 12 18 18 H 1.48501 * 109.47281 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47036 * 120.00088 * 17 15 13 20 20 H 1.48496 * 109.47361 * 240.00136 * 17 15 13 21 21 H 1.09007 * 109.46680 * 300.00273 * 1 2 3 22 22 H 1.08993 * 109.47207 * 60.00125 * 1 2 3 23 23 H 1.08997 * 109.46969 * 180.02562 * 1 2 3 24 24 H 1.07998 * 119.33568 * 179.97438 * 5 4 3 25 25 H 0.96698 * 113.99650 * 89.99641 * 7 6 5 26 26 H 1.08999 * 109.47281 * 263.22299 * 9 8 6 27 27 H 0.97003 * 120.00303 * 357.02486 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2068 0.0000 4 7 1.3253 2.3099 -0.0985 5 6 1.8808 3.5073 -0.1032 6 6 3.2597 3.6658 -0.0034 7 8 3.8089 4.9098 -0.0099 8 6 4.0675 2.5473 0.1072 9 6 5.5639 2.6820 0.2226 10 9 5.8811 3.9509 0.7191 11 9 6.0543 1.7040 1.0946 12 6 3.4531 1.2785 0.1048 13 6 4.2276 0.1036 0.2105 14 1 5.1697 0.0291 -0.3122 15 6 3.7750 -0.9648 0.9927 16 7 2.9446 -0.7468 1.9803 17 14 4.3561 -2.7020 0.6270 18 1 5.2849 -2.6798 -0.5315 19 1 5.0599 -3.2488 1.8147 20 1 3.1858 -3.5584 0.3074 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.2524 4.3818 -0.1863 25 1 3.9000 5.3040 0.8683 26 1 6.0172 2.5526 -0.7602 27 1 2.6765 0.1597 2.1976 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238419153.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:04 Heat of formation + Delta-G solvation = -177.845102 kcal Electronic energy + Delta-G solvation = -18432.003508 eV Core-core repulsion = 15018.141889 eV Total energy + Delta-G solvation = -3413.861619 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.065 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.75022 -47.75600 -41.20582 -39.14300 -37.22896 -36.07341 -33.28722 -30.54676 -28.03203 -27.92839 -26.41237 -23.58513 -22.71211 -20.28692 -19.20082 -18.65734 -18.47493 -18.23463 -17.27294 -16.71759 -16.47072 -16.10115 -15.65705 -15.28287 -14.87193 -14.59959 -14.28685 -14.20526 -13.94477 -13.75507 -13.39711 -12.83186 -12.54555 -12.29021 -12.09976 -11.99152 -11.81359 -11.75092 -10.90698 -10.36824 -10.14540 -9.31833 -9.02502 -6.52093 0.38352 0.52718 1.54913 1.65732 1.81805 2.34472 2.47603 2.69830 3.03615 3.14770 3.39496 3.60710 3.81518 3.98236 4.20358 4.47040 4.49837 4.62301 4.67649 4.76715 5.05414 5.37992 5.49240 5.66069 5.83393 6.20870 6.65745 6.70972 6.94114 7.30361 8.01085 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.012551 C = 0.008385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.706273 B = 2230.387390 C = 3338.475779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.304 6.304 3 C 0.211 3.789 4 N -0.507 5.507 5 C -0.045 4.045 6 C 0.101 3.899 7 O -0.493 6.493 8 C -0.290 4.290 9 C 0.344 3.656 10 F -0.205 7.205 11 F -0.205 7.205 12 C 0.051 3.949 13 C -0.501 4.501 14 H 0.087 0.913 15 C 0.015 3.985 16 N -0.777 5.777 17 Si 1.117 2.883 18 H -0.261 1.261 19 H -0.269 1.269 20 H -0.267 1.267 21 H 0.038 0.962 22 H 0.050 0.950 23 H 0.108 0.892 24 H 0.162 0.838 25 H 0.399 0.601 26 H 0.124 0.876 27 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.034 1.659 -2.079 2.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.211 6.211 3 C 0.024 3.976 4 N -0.232 5.232 5 C -0.195 4.195 6 C 0.054 3.946 7 O -0.304 6.304 8 C -0.298 4.298 9 C 0.291 3.709 10 F -0.186 7.186 11 F -0.186 7.186 12 C 0.045 3.955 13 C -0.528 4.528 14 H 0.105 0.895 15 C -0.204 4.204 16 N -0.398 5.398 17 Si 0.935 3.065 18 H -0.185 1.185 19 H -0.194 1.194 20 H -0.192 1.192 21 H 0.056 0.944 22 H 0.069 0.931 23 H 0.126 0.874 24 H 0.179 0.821 25 H 0.257 0.743 26 H 0.141 0.859 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.110 -0.204 -2.179 2.191 hybrid contribution 0.531 2.269 0.344 2.356 sum 0.641 2.065 -1.835 2.836 Atomic orbital electron populations 1.22751 0.78468 1.03035 1.00757 1.86263 1.21868 1.24305 1.88669 1.20381 0.89809 0.84345 1.03056 1.66775 1.40902 0.98859 1.16695 1.22095 0.91555 0.93631 1.12247 1.18787 0.91411 0.84080 1.00295 1.84695 1.83311 1.27374 1.34996 1.20865 0.95573 0.93315 1.20016 1.19748 0.90129 0.70478 0.90561 1.92875 1.93826 1.41819 1.90121 1.92970 1.88901 1.63399 1.73345 1.17523 0.89780 0.93416 0.94763 1.20540 1.06799 0.98497 1.26980 0.89539 1.28192 0.92254 1.09059 0.90894 1.70491 1.22455 1.25858 1.20970 0.82985 0.77151 0.68795 0.77570 1.18492 1.19431 1.19226 0.94361 0.93121 0.87389 0.82133 0.74338 0.85932 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.75 10.40 113.37 1.18 2.93 15 2 O -0.30 -14.77 7.64 -87.48 -0.67 -15.44 15 3 C 0.21 10.65 6.51 85.46 0.56 11.21 15 4 N -0.51 -23.98 9.19 -306.50 -2.82 -26.79 15 5 C -0.04 -1.93 11.12 84.89 0.94 -0.99 15 6 C 0.10 4.32 6.63 22.53 0.15 4.47 15 7 O -0.49 -17.63 11.54 -93.36 -1.08 -18.71 15 8 C -0.29 -13.41 5.81 -19.16 -0.11 -13.52 15 9 C 0.34 14.04 5.28 71.23 0.38 14.41 15 10 F -0.21 -7.76 14.97 44.97 0.67 -7.09 15 11 F -0.20 -9.20 14.97 44.97 0.67 -8.53 15 12 C 0.05 2.62 4.93 -21.10 -0.10 2.52 15 13 C -0.50 -25.30 6.79 23.39 0.16 -25.15 15 14 H 0.09 4.24 7.37 -2.91 -0.02 4.22 15 15 C 0.02 0.75 4.25 85.25 0.36 1.12 15 16 N -0.78 -40.67 12.22 21.83 0.27 -40.40 15 17 Si 1.12 42.23 30.00 68.60 2.06 44.29 15 18 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 19 H -0.27 -9.72 7.11 99.48 0.71 -9.01 15 20 H -0.27 -9.81 7.11 99.48 0.71 -9.10 15 21 H 0.04 1.47 8.14 -2.38 -0.02 1.45 15 22 H 0.05 1.84 8.05 -2.39 -0.02 1.82 15 23 H 0.11 3.45 8.14 -2.39 -0.02 3.43 15 24 H 0.16 5.90 8.06 -2.91 -0.02 5.88 15 25 H 0.40 11.07 8.75 -74.06 -0.65 10.42 15 26 H 0.12 4.34 8.14 -2.39 -0.02 4.32 15 27 H 0.27 15.16 7.09 -92.71 -0.66 14.50 15 Total: -1.00 -59.47 247.32 3.31 -56.16 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.69 Total: 19.52 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 3.51 Total: -3.00 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -2.55 Total: -67.20 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.75 Total: -34.15 kcal Atomic # 9 Polarization: -16.96 SS G_CDS: 1.35 Total: -15.62 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.06 Total: 44.29 kcal Total: -59.47 3.31 -56.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238419153.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.684 kcal (2) G-P(sol) polarization free energy of solvation -59.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds