Wall clock time and date at job start Mon Mar 30 2020 04:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35975 * 116.99089 * 2 1 4 4 C 1.39985 * 120.35934 * 90.00623 * 3 2 1 5 5 O 1.35544 * 119.45039 * 359.97438 * 4 3 2 6 6 N 1.32439 * 121.09843 * 179.71522 * 4 3 2 7 7 C 1.31519 * 121.94712 * 0.25423 * 6 4 3 8 8 C 1.40724 * 120.57537 * 359.97438 * 7 6 4 9 9 C 1.41255 * 120.57349 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99945 * 147.60512 * 9 8 7 11 11 C 1.39872 * 119.99924 * 327.60438 * 9 8 7 12 12 N 1.30892 * 120.00156 * 348.65129 * 11 9 8 13 13 Si 1.86795 * 119.99858 * 168.64728 * 11 9 8 14 14 H 1.48496 * 109.47294 * 60.00155 * 13 11 9 15 15 H 1.48507 * 109.47231 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47506 * 299.99832 * 13 11 9 17 17 C 1.38017 * 120.35767 * 270.22534 * 3 2 1 18 18 C 1.50702 * 120.87985 * 0.02562 * 17 3 2 19 19 F 1.39899 * 109.47369 * 18.98386 * 18 17 3 20 20 F 1.39904 * 109.46972 * 138.98139 * 18 17 3 21 21 H 1.08995 * 109.47537 * 60.00470 * 1 2 3 22 22 H 1.09008 * 109.47009 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47516 * 299.99638 * 1 2 3 24 24 H 0.96704 * 113.99789 * 269.72879 * 5 4 3 25 25 H 1.07998 * 119.71714 * 180.02562 * 7 6 4 26 26 H 0.96989 * 120.00229 * 180.02562 * 12 11 9 27 27 H 1.08996 * 109.47161 * 258.98359 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2116 0.0000 4 6 2.3673 1.8420 1.2079 5 8 2.0576 1.2348 2.3795 6 7 2.9734 3.0195 1.2250 7 6 3.2964 3.6521 0.1181 8 6 3.0049 3.0900 -1.1387 9 6 3.3523 3.7692 -2.3275 10 1 3.6259 3.2088 -3.2093 11 6 3.3420 5.1674 -2.3627 12 7 2.8032 5.8429 -1.3795 13 14 4.0973 6.0708 -3.8128 14 1 3.3973 5.6754 -5.0613 15 1 3.9592 7.5354 -3.6099 16 1 5.5363 5.7199 -3.9197 17 6 2.3585 1.8353 -1.1909 18 6 2.0243 1.1918 -2.5120 19 9 1.0442 0.2123 -2.3189 20 9 1.5441 2.1640 -3.3960 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.1824 1.4631 2.7214 25 1 3.7904 4.6108 0.1740 26 1 2.7958 6.8125 -1.4040 27 1 2.9202 0.7320 -2.9292 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238440437.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:35 Heat of formation + Delta-G solvation = -151.349693 kcal Electronic energy + Delta-G solvation = -18337.110563 eV Core-core repulsion = 14924.397872 eV Total energy + Delta-G solvation = -3412.712692 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.065 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.12595 -46.11541 -39.37797 -36.95674 -36.12003 -33.85562 -31.68975 -29.19639 -26.64793 -25.76429 -24.99076 -21.66434 -21.12110 -18.07623 -17.83857 -16.89953 -16.59698 -16.17713 -15.65177 -15.35305 -15.07753 -14.71165 -14.01132 -13.69440 -13.34813 -12.84870 -12.45644 -12.37665 -12.01715 -11.64329 -11.57211 -11.39925 -11.16219 -11.08983 -10.71162 -10.47801 -10.29342 -9.65264 -9.52504 -8.53398 -8.06220 -7.58438 -7.13941 -4.77333 2.13035 2.28596 2.92991 2.95570 2.97840 3.70505 4.19908 4.44694 4.61474 4.84703 5.15056 5.26697 5.61546 5.72118 5.81757 5.86021 6.04855 6.29896 6.49080 6.62813 6.79540 6.96092 7.10278 7.55826 7.92877 7.97715 8.19417 8.39761 8.69132 9.31123 9.83162 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.010107 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.486961 B = 2769.724440 C = 3620.751195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.330 6.330 3 C 0.102 3.898 4 C 0.135 3.865 5 O -0.477 6.477 6 N -0.468 5.468 7 C 0.079 3.921 8 C 0.094 3.906 9 C -0.428 4.428 10 H 0.090 0.910 11 C 0.074 3.926 12 N -0.783 5.783 13 Si 0.922 3.078 14 H -0.261 1.261 15 H -0.275 1.275 16 H -0.260 1.260 17 C -0.269 4.269 18 C 0.338 3.662 19 F -0.208 7.208 20 F -0.195 7.195 21 H 0.052 0.948 22 H 0.083 0.917 23 H 0.031 0.969 24 H 0.362 0.638 25 H 0.159 0.841 26 H 0.291 0.709 27 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.197 -2.929 -2.434 4.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.246 6.246 3 C 0.055 3.945 4 C -0.038 4.038 5 O -0.280 6.280 6 N -0.186 5.186 7 C -0.089 4.089 8 C 0.088 3.912 9 C -0.457 4.457 10 H 0.108 0.892 11 C -0.147 4.147 12 N -0.407 5.407 13 Si 0.745 3.255 14 H -0.185 1.185 15 H -0.199 1.199 16 H -0.184 1.184 17 C -0.278 4.278 18 C 0.284 3.716 19 F -0.189 7.189 20 F -0.176 7.176 21 H 0.071 0.929 22 H 0.101 0.899 23 H 0.049 0.951 24 H 0.214 0.786 25 H 0.176 0.824 26 H 0.102 0.898 27 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.526 -2.885 -1.576 3.624 hybrid contribution -0.760 0.505 -1.290 1.580 sum -2.286 -2.379 -2.865 4.370 Atomic orbital electron populations 1.22897 0.80123 1.02091 1.00110 1.85967 1.19136 1.25094 1.94399 1.19104 0.97106 0.86379 0.91870 1.18798 1.09394 0.91791 0.83787 1.84856 1.38109 1.67549 1.37443 1.66747 1.10529 1.07237 1.34042 1.22795 1.00933 0.99553 0.85604 1.18206 0.88435 0.89148 0.95394 1.19562 1.37318 0.91390 0.97424 0.89247 1.26003 0.92734 0.97920 0.97999 1.69735 1.30153 1.09968 1.30817 0.86107 0.80515 0.78031 0.80823 1.18501 1.19930 1.18384 1.20760 1.13391 1.01299 0.92310 1.19713 0.86676 0.77802 0.87403 1.92891 1.66437 1.63863 1.95731 1.92987 1.89978 1.64640 1.70034 0.92934 0.89853 0.95064 0.78561 0.82382 0.89776 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.12 101.05 1.02 1.75 15 2 O -0.33 -7.08 8.81 -34.22 -0.30 -7.38 15 3 C 0.10 2.40 5.70 -39.01 -0.22 2.18 15 4 C 0.14 3.27 7.76 -16.64 -0.13 3.14 15 5 O -0.48 -10.31 13.33 -32.88 -0.44 -10.75 15 6 N -0.47 -11.87 10.36 -12.46 -0.13 -12.00 15 7 C 0.08 1.99 9.82 -16.75 -0.16 1.82 15 8 C 0.09 2.33 5.48 -106.67 -0.59 1.74 15 9 C -0.43 -10.17 7.33 -37.82 -0.28 -10.45 15 10 H 0.09 2.02 7.01 -52.49 -0.37 1.65 15 11 C 0.07 1.67 5.22 -17.34 -0.09 1.58 15 12 N -0.78 -18.36 11.15 55.54 0.62 -17.75 15 13 Si 0.92 16.96 29.57 -169.99 -5.03 11.93 15 14 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 15 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 16 H -0.26 -4.69 7.11 56.52 0.40 -4.29 15 17 C -0.27 -6.37 5.80 -103.56 -0.60 -6.97 15 18 C 0.34 7.01 5.16 36.01 0.19 7.20 15 19 F -0.21 -4.17 12.55 2.25 0.03 -4.14 15 20 F -0.20 -4.28 15.17 2.25 0.03 -4.24 15 21 H 0.05 0.94 6.43 -51.93 -0.33 0.60 15 22 H 0.08 1.18 8.14 -51.92 -0.42 0.76 15 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 15 24 H 0.36 6.09 9.06 45.56 0.41 6.50 15 25 H 0.16 3.95 6.53 -52.49 -0.34 3.61 15 26 H 0.29 6.18 8.30 -40.82 -0.34 5.84 15 27 H 0.10 1.78 8.14 -51.93 -0.42 1.36 15 LS Contribution 246.41 15.07 3.71 3.71 Total: -1.00 -28.06 246.41 -3.40 -31.46 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -1.03 Total: 7.15 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -0.86 Total: 2.00 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 0.49 Total: -29.74 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.74 Total: -18.13 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 0.06 Total: -8.39 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.06 -3.40 -31.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238440437.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.893 kcal (2) G-P(sol) polarization free energy of solvation -28.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds