Wall clock time and date at job start Mon Mar 30 2020 04:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35975 * 116.99089 * 2 1 4 4 C 1.39985 * 120.35934 * 90.00623 * 3 2 1 5 5 O 1.35544 * 119.45039 * 359.97438 * 4 3 2 6 6 N 1.32439 * 121.09843 * 179.71522 * 4 3 2 7 7 C 1.31519 * 121.94712 * 0.25423 * 6 4 3 8 8 C 1.40724 * 120.57537 * 359.97438 * 7 6 4 9 9 C 1.41255 * 120.57349 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99945 * 147.60512 * 9 8 7 11 11 C 1.39872 * 119.99924 * 327.60438 * 9 8 7 12 12 N 1.30892 * 120.00156 * 348.65129 * 11 9 8 13 13 Si 1.86795 * 119.99858 * 168.64728 * 11 9 8 14 14 H 1.48496 * 109.47294 * 60.00155 * 13 11 9 15 15 H 1.48507 * 109.47231 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47506 * 299.99832 * 13 11 9 17 17 C 1.38017 * 120.35767 * 270.22534 * 3 2 1 18 18 C 1.50702 * 120.87985 * 0.02562 * 17 3 2 19 19 F 1.39899 * 109.47369 * 18.98386 * 18 17 3 20 20 F 1.39904 * 109.46972 * 138.98139 * 18 17 3 21 21 H 1.08995 * 109.47537 * 60.00470 * 1 2 3 22 22 H 1.09008 * 109.47009 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47516 * 299.99638 * 1 2 3 24 24 H 0.96704 * 113.99789 * 269.72879 * 5 4 3 25 25 H 1.07998 * 119.71714 * 180.02562 * 7 6 4 26 26 H 0.96989 * 120.00229 * 180.02562 * 12 11 9 27 27 H 1.08996 * 109.47161 * 258.98359 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2116 0.0000 4 6 2.3673 1.8420 1.2079 5 8 2.0576 1.2348 2.3795 6 7 2.9734 3.0195 1.2250 7 6 3.2964 3.6521 0.1181 8 6 3.0049 3.0900 -1.1387 9 6 3.3523 3.7692 -2.3275 10 1 3.6259 3.2088 -3.2093 11 6 3.3420 5.1674 -2.3627 12 7 2.8032 5.8429 -1.3795 13 14 4.0973 6.0708 -3.8128 14 1 3.3973 5.6754 -5.0613 15 1 3.9592 7.5354 -3.6099 16 1 5.5363 5.7199 -3.9197 17 6 2.3585 1.8353 -1.1909 18 6 2.0243 1.1918 -2.5120 19 9 1.0442 0.2123 -2.3189 20 9 1.5441 2.1640 -3.3960 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.1824 1.4631 2.7214 25 1 3.7904 4.6108 0.1740 26 1 2.7958 6.8125 -1.4040 27 1 2.9202 0.7320 -2.9292 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238440437.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:34 Heat of formation + Delta-G solvation = -172.078992 kcal Electronic energy + Delta-G solvation = -18338.009453 eV Core-core repulsion = 14924.397872 eV Total energy + Delta-G solvation = -3413.611581 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.065 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.76650 -47.76548 -41.14163 -38.64899 -37.84875 -35.61872 -33.47159 -30.95176 -28.22385 -27.41900 -26.74582 -23.44882 -22.88426 -19.81751 -19.56676 -18.61704 -18.24774 -17.86301 -17.34433 -17.03557 -16.70983 -16.32786 -15.69979 -15.32502 -14.97906 -14.49648 -14.15783 -14.02360 -13.66632 -13.35867 -13.25427 -12.95594 -12.81958 -12.60053 -12.36900 -12.10337 -11.91675 -11.28717 -11.17179 -10.33714 -9.87677 -9.40476 -8.84907 -6.58951 0.33654 0.49243 1.43333 1.52052 1.55972 2.17492 2.47126 2.80022 2.96900 3.17824 3.35334 3.57208 3.92749 4.20440 4.37669 4.49819 4.51285 4.70393 4.75020 4.88855 5.04429 5.20066 5.33813 5.71084 6.14010 6.29594 6.47047 6.61713 7.01881 7.45258 8.14633 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.010107 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.486961 B = 2769.724440 C = 3620.751195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.340 6.340 3 C 0.104 3.896 4 C 0.118 3.882 5 O -0.481 6.481 6 N -0.484 5.484 7 C 0.057 3.943 8 C 0.074 3.926 9 C -0.443 4.443 10 H 0.098 0.902 11 C 0.037 3.963 12 N -0.810 5.810 13 Si 0.991 3.009 14 H -0.259 1.259 15 H -0.267 1.267 16 H -0.252 1.252 17 C -0.284 4.284 18 C 0.339 3.661 19 F -0.203 7.203 20 F -0.203 7.203 21 H 0.044 0.956 22 H 0.118 0.882 23 H 0.043 0.957 24 H 0.384 0.616 25 H 0.151 0.849 26 H 0.300 0.700 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.365 -3.258 -3.543 5.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.256 6.256 3 C 0.057 3.943 4 C -0.056 4.056 5 O -0.286 6.286 6 N -0.202 5.202 7 C -0.110 4.110 8 C 0.069 3.931 9 C -0.471 4.471 10 H 0.116 0.884 11 C -0.181 4.181 12 N -0.434 5.434 13 Si 0.811 3.189 14 H -0.183 1.183 15 H -0.191 1.191 16 H -0.176 1.176 17 C -0.292 4.292 18 C 0.286 3.714 19 F -0.185 7.185 20 F -0.184 7.184 21 H 0.062 0.938 22 H 0.136 0.864 23 H 0.062 0.938 24 H 0.239 0.761 25 H 0.168 0.832 26 H 0.111 0.889 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.715 -3.221 -2.666 4.520 hybrid contribution -0.806 0.552 -0.870 1.308 sum -2.521 -2.669 -3.536 5.097 Atomic orbital electron populations 1.23162 0.77751 1.04467 1.00319 1.85930 1.21305 1.23910 1.94417 1.19147 0.96817 0.86687 0.91626 1.18985 1.09992 0.91793 0.84811 1.84780 1.39842 1.67296 1.36692 1.66693 1.11091 1.08064 1.34392 1.22701 1.02353 0.99791 0.86143 1.18437 0.89069 0.90010 0.95624 1.19854 1.37521 0.92350 0.97367 0.88384 1.26884 0.92459 0.98196 1.00542 1.69783 1.30401 1.10773 1.32453 0.85076 0.79753 0.76960 0.77118 1.18325 1.19111 1.17608 1.21097 1.13067 1.01227 0.93823 1.19868 0.87730 0.77650 0.86170 1.92895 1.66437 1.63446 1.95682 1.92966 1.90180 1.65208 1.70069 0.93772 0.86415 0.93835 0.76148 0.83203 0.88930 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.18 10.12 113.37 1.15 2.32 15 2 O -0.34 -13.99 8.81 -79.36 -0.70 -14.69 15 3 C 0.10 4.84 5.70 22.64 0.13 4.97 15 4 C 0.12 5.69 7.76 85.02 0.66 6.35 15 5 O -0.48 -20.40 13.33 -74.57 -0.99 -21.40 15 6 N -0.48 -24.94 10.36 -306.18 -3.17 -28.11 15 7 C 0.06 2.94 9.82 85.35 0.84 3.78 15 8 C 0.07 3.70 5.48 -21.19 -0.12 3.59 15 9 C -0.44 -20.86 7.33 23.41 0.17 -20.69 15 10 H 0.10 4.32 7.01 -2.91 -0.02 4.30 15 11 C 0.04 1.66 5.22 85.23 0.44 2.10 15 12 N -0.81 -38.02 11.15 21.82 0.24 -37.78 15 13 Si 0.99 33.59 29.57 68.60 2.03 35.62 15 14 H -0.26 -8.68 7.11 99.48 0.71 -7.98 15 15 H -0.27 -8.63 7.11 99.48 0.71 -7.93 15 16 H -0.25 -8.21 7.11 99.48 0.71 -7.51 15 17 C -0.28 -13.29 5.80 -19.18 -0.11 -13.40 15 18 C 0.34 13.58 5.16 71.24 0.37 13.94 15 19 F -0.20 -7.77 12.55 44.97 0.56 -7.21 15 20 F -0.20 -8.64 15.17 44.97 0.68 -7.96 15 21 H 0.04 1.49 6.43 -2.39 -0.02 1.48 15 22 H 0.12 2.95 8.14 -2.38 -0.02 2.93 15 23 H 0.04 1.28 8.14 -2.39 -0.02 1.26 15 24 H 0.38 12.42 9.06 -74.05 -0.67 11.75 15 25 H 0.15 7.76 6.53 -2.91 -0.02 7.74 15 26 H 0.30 12.63 8.30 -92.72 -0.77 11.86 15 27 H 0.13 4.41 8.14 -2.39 -0.02 4.39 15 Total: -1.00 -59.00 246.41 2.75 -56.25 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.57 Total: 22.31 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 3.53 Total: 2.97 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -2.93 Total: -65.90 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -1.69 Total: -36.09 kcal Atomic # 9 Polarization: -16.41 SS G_CDS: 1.25 Total: -15.17 kcal Atomic # 14 Polarization: 33.59 SS G_CDS: 2.03 Total: 35.62 kcal Total: -59.00 2.75 -56.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238440437.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.831 kcal (2) G-P(sol) polarization free energy of solvation -59.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds