Wall clock time and date at job start Mon Mar 30 2020 03:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86801 * 119.99564 * 2 1 4 4 H 1.48501 * 109.46928 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47117 * 299.99695 * 3 2 1 6 6 H 1.48497 * 109.47343 * 59.99769 * 3 2 1 7 7 C 1.39967 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99965 * 179.97438 * 7 2 1 9 9 C 1.40239 * 120.00214 * 0.02562 * 7 2 1 10 10 C 1.38143 * 126.27861 * 359.97245 * 9 7 2 11 11 N 1.37155 * 108.19642 * 180.02562 * 10 9 7 12 12 N 1.40163 * 143.76954 * 180.02562 * 11 10 9 13 13 C 1.31087 * 108.46969 * 179.97438 * 12 11 10 14 14 C 1.50700 * 125.72200 * 180.02562 * 13 12 11 15 15 F 1.39908 * 109.47179 * 4.97043 * 14 13 12 16 16 F 1.39891 * 109.47652 * 124.97336 * 14 13 12 17 17 F 1.39905 * 109.47215 * 244.97851 * 14 13 12 18 18 C 1.39603 * 108.56189 * 359.81424 * 13 12 11 19 19 C 1.36295 * 108.56883 * 359.97438 * 11 10 9 20 20 N 1.38372 * 108.30745 * 359.97438 * 19 11 10 21 21 H 0.97002 * 126.25238 * 180.02562 * 20 19 11 22 22 H 0.96995 * 120.00574 * 0.02562 * 1 2 3 23 23 H 1.07994 * 125.90090 * 359.97438 * 10 9 7 24 24 H 1.07999 * 126.08233 * 180.02562 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.7029 1.3465 0.0006 5 1 1.8841 2.3965 -1.2125 6 1 1.8841 2.3965 1.2124 7 6 2.0089 -1.2121 0.0005 8 1 3.0889 -1.2121 0.0001 9 6 1.3078 -2.4267 0.0005 10 6 -0.0653 -2.5779 0.0006 11 7 -0.3485 -3.9199 0.0011 12 7 -1.3924 -4.8551 0.0012 13 6 -0.8721 -6.0583 0.0015 14 6 -1.6458 -7.3515 0.0010 15 9 -3.0129 -7.0771 -0.1140 16 9 -1.2359 -8.1399 -1.0794 17 9 -1.4072 -8.0382 1.1964 18 6 0.5190 -5.9409 -0.0026 19 6 0.8261 -4.6113 0.0009 20 7 1.8671 -3.6996 -0.0004 21 1 2.8139 -3.9102 -0.0012 22 1 -0.4851 0.8400 -0.0004 23 1 -0.7905 -1.7776 0.0010 24 1 1.2262 -6.7571 -0.0038 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259831007.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:59 Heat of formation + Delta-G solvation = -51.532830 kcal Electronic energy + Delta-G solvation = -17069.905653 eV Core-core repulsion = 13570.353792 eV Total energy + Delta-G solvation = -3499.551862 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.047 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -51.15170 -48.65901 -48.65510 -43.27227 -38.84736 -35.60252 -33.36552 -31.10022 -29.32588 -28.67762 -25.70793 -22.57959 -22.46111 -21.65014 -19.55459 -19.53822 -19.13178 -18.17545 -17.95317 -16.59945 -16.52846 -16.21723 -15.51383 -15.41152 -15.08871 -14.96490 -14.81042 -14.80856 -14.57538 -13.91952 -13.51107 -13.34776 -13.02754 -12.84101 -12.51943 -11.93206 -11.66282 -11.42319 -11.18648 -9.86982 -8.74251 -8.36485 -6.60891 0.75391 1.17262 1.39404 1.45691 1.60675 1.63228 1.80441 1.96799 2.11968 2.36454 3.00663 3.08002 3.11517 3.42721 3.95967 4.53599 4.64178 4.92259 5.00465 5.25476 5.61335 5.65809 5.88036 6.02351 6.56279 6.68628 7.02567 7.15814 8.21555 Molecular weight = 245.05amu Principal moments of inertia in cm(-1) A = 0.063943 B = 0.005370 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.782805 B = 5212.846578 C = 5476.137626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.028 3.972 3 Si 1.015 2.985 4 H -0.247 1.247 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.449 4.449 8 H 0.111 0.889 9 C 0.245 3.755 10 C -0.212 4.212 11 N -0.259 5.259 12 N -0.329 5.329 13 C -0.045 4.045 14 C 0.576 3.424 15 F -0.175 7.175 16 F -0.163 7.163 17 F -0.165 7.165 18 C -0.274 4.274 19 C 0.206 3.794 20 N -0.603 5.603 21 H 0.438 0.562 22 H 0.296 0.704 23 H 0.188 0.812 24 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.177 -4.703 -0.010 6.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.189 4.189 3 Si 0.835 3.165 4 H -0.170 1.170 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.482 4.482 8 H 0.129 0.871 9 C 0.138 3.862 10 C -0.337 4.337 11 N -0.031 5.031 12 N -0.160 5.160 13 C -0.199 4.199 14 C 0.520 3.480 15 F -0.156 7.156 16 F -0.144 7.144 17 F -0.147 7.147 18 C -0.311 4.311 19 C -0.023 4.023 20 N -0.225 5.225 21 H 0.280 0.720 22 H 0.107 0.893 23 H 0.205 0.795 24 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.723 -3.941 -0.010 4.790 hybrid contribution 0.883 -0.067 0.004 0.886 sum 3.606 -4.008 -0.006 5.392 Atomic orbital electron populations 1.69540 1.09356 1.31142 1.34527 1.26916 0.95667 1.05050 0.91221 0.84623 0.79119 0.74121 0.78660 1.16961 1.19342 1.19352 1.19093 0.95918 0.87440 1.45775 0.87075 1.18281 0.88710 0.84018 0.95203 1.23018 0.96472 0.78960 1.35249 1.46968 1.04151 1.06721 1.45262 1.77356 1.08826 0.95642 1.34183 1.21690 0.94177 0.92812 1.11211 1.16469 0.76074 0.81495 0.74003 1.93187 1.32855 1.93856 1.95748 1.93204 1.90257 1.75572 1.55413 1.93208 1.94216 1.80811 1.46449 1.19411 0.93217 0.92012 1.26441 1.19544 0.83208 0.91218 1.08374 1.41820 1.06847 1.02951 1.70857 0.71963 0.89274 0.79547 0.80692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.63 10.25 21.84 0.22 -38.41 14 2 C 0.03 1.19 5.50 85.25 0.47 1.66 14 3 Si 1.02 32.25 29.56 68.60 2.03 34.28 14 4 H -0.25 -7.26 7.11 99.48 0.71 -6.55 14 5 H -0.27 -8.42 7.11 99.48 0.71 -7.71 14 6 H -0.27 -8.43 7.11 99.48 0.71 -7.72 14 7 C -0.45 -20.07 9.45 23.18 0.22 -19.85 14 8 H 0.11 4.35 7.85 -2.91 -0.02 4.32 14 9 C 0.25 11.82 6.89 38.46 0.26 12.08 14 10 C -0.21 -11.40 10.91 83.84 0.92 -10.48 14 11 N -0.26 -13.56 4.64 -189.32 -0.88 -14.44 14 12 N -0.33 -16.64 12.46 -47.43 -0.59 -17.23 14 13 C -0.04 -1.92 6.49 43.00 0.28 -1.64 14 14 C 0.58 20.45 3.50 71.24 0.25 20.70 14 15 F -0.18 -6.42 17.13 44.97 0.77 -5.65 14 16 F -0.16 -5.24 17.29 44.97 0.78 -4.47 14 17 F -0.17 -5.41 17.30 44.97 0.78 -4.63 14 18 C -0.27 -11.12 10.76 22.19 0.24 -10.88 14 19 C 0.21 9.37 8.54 131.44 1.12 10.49 14 20 N -0.60 -25.00 6.35 -185.42 -1.18 -26.18 14 21 H 0.44 14.09 8.96 -92.71 -0.83 13.26 14 22 H 0.30 12.52 8.30 -92.71 -0.77 11.75 14 23 H 0.19 10.60 5.61 -2.91 -0.02 10.58 14 24 H 0.18 5.63 8.06 -2.91 -0.02 5.60 14 Total: -1.00 -57.25 237.12 6.15 -51.11 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.46 Total: 23.53 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 3.76 Total: 2.09 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -2.42 Total: -96.26 kcal Atomic # 9 Polarization: -17.08 SS G_CDS: 2.33 Total: -14.75 kcal Atomic # 14 Polarization: 32.25 SS G_CDS: 2.03 Total: 34.28 kcal Total: -57.25 6.15 -51.11 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259831007.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.426 kcal (2) G-P(sol) polarization free energy of solvation -57.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds