Wall clock time and date at job start Mon Mar 30 2020 04:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38666 * 125.96044 * 2 1 4 4 Cl 1.73602 * 126.04570 * 359.97438 * 3 2 1 5 5 C 1.32975 * 107.91351 * 180.02562 * 3 2 1 6 6 C 1.50708 * 126.07145 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.46608 * 4.60023 * 6 5 3 8 8 N 1.46901 * 109.47167 * 244.59782 * 6 5 3 9 9 C 1.50705 * 109.47176 * 124.59375 * 6 5 3 10 10 H 1.07997 * 119.99787 * 0.02562 * 9 6 5 11 11 C 1.37868 * 119.99820 * 180.02562 * 9 6 5 12 12 N 1.31512 * 120.00411 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99955 * 180.02562 * 11 9 6 14 14 H 1.48499 * 109.47492 * 89.99945 * 13 11 9 15 15 H 1.48504 * 109.47263 * 210.00298 * 13 11 9 16 16 H 1.48506 * 109.47215 * 330.00064 * 13 11 9 17 17 N 1.38864 * 107.86831 * 359.97438 * 5 3 2 18 18 C 1.46489 * 126.00389 * 180.02562 * 17 5 3 19 19 C 1.34746 * 125.96450 * 180.32904 * 2 1 3 20 20 O 1.21799 * 125.92483 * 0.02562 * 19 2 1 21 21 H 1.09001 * 109.46807 * 90.00037 * 1 2 3 22 22 H 1.08996 * 109.47397 * 210.00369 * 1 2 3 23 23 H 1.09002 * 109.47245 * 330.00235 * 1 2 3 24 24 H 1.00897 * 110.99807 * 180.36704 * 8 6 5 25 25 H 1.00897 * 110.99649 * 304.31686 * 8 6 5 26 26 H 0.97003 * 120.00378 * 179.97438 * 12 11 9 27 27 H 1.09003 * 109.47435 * 84.96261 * 18 17 5 28 28 H 1.09004 * 109.47132 * 324.96624 * 18 17 5 29 29 H 1.09000 * 109.47357 * 204.96474 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2793 1.1224 0.0000 4 17 1.7430 2.7735 -0.0006 5 6 3.5436 0.7104 -0.0006 6 6 4.7647 1.5938 -0.0013 7 1 4.4586 2.6367 0.0811 8 7 5.5091 1.3992 -1.2528 9 6 5.6451 1.2348 1.1679 10 1 5.3502 0.4457 1.8437 11 6 6.8270 1.9138 1.3749 12 7 7.1860 2.8750 0.5523 13 14 7.9187 1.4684 2.8238 14 1 8.8834 0.4172 2.4120 15 1 8.6614 2.6734 3.2729 16 1 7.0791 0.9604 3.9384 17 7 3.5393 -0.6782 -0.0003 18 6 4.7217 -1.5430 -0.0003 19 6 2.2564 -1.0906 -0.0063 20 8 1.8777 -2.2482 -0.0134 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 6.3362 1.9766 -1.2750 25 1 5.7431 0.4269 -1.3868 26 1 8.0174 3.3530 0.6981 27 1 5.0683 -1.6845 1.0234 28 1 5.5117 -1.0784 -0.5903 29 1 4.4649 -2.5096 -0.4338 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260076823.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:40 Heat of formation + Delta-G solvation = 11.333624 kcal Electronic energy + Delta-G solvation = -16251.973388 eV Core-core repulsion = 13430.404606 eV Total energy + Delta-G solvation = -2821.568782 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 245.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.77898 -36.76775 -36.12576 -35.31147 -33.97023 -31.33169 -30.01494 -27.27719 -25.78217 -25.46722 -22.47934 -20.57565 -19.80992 -17.08309 -16.61434 -16.12491 -15.40038 -14.85756 -14.74401 -14.25449 -13.89959 -13.65131 -13.07969 -12.63791 -12.46263 -12.11881 -12.08859 -11.91724 -11.39342 -11.07207 -10.97330 -10.75371 -10.37503 -10.29635 -10.04339 -9.73900 -9.26795 -8.76784 -7.43335 -7.02495 -6.23373 -4.41546 2.22610 2.66351 2.73104 3.14400 3.23456 3.26970 3.31644 4.15255 4.23377 4.99563 5.07725 5.46264 5.49856 5.69318 5.85107 5.86980 5.93753 6.08591 6.31846 6.54704 6.78083 7.21748 7.33247 7.59955 7.79632 7.92266 8.45622 8.71191 8.74122 8.93573 9.31105 10.74319 Molecular weight = 245.07amu Principal moments of inertia in cm(-1) A = 0.025657 B = 0.009046 C = 0.007630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.068560 B = 3094.411662 C = 3668.683511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.531 5.531 3 C 0.008 3.992 4 Cl -0.011 7.011 5 C 0.130 3.870 6 C 0.269 3.731 7 H 0.073 0.927 8 N -0.847 5.847 9 C -0.554 4.554 10 H 0.058 0.942 11 C 0.072 3.928 12 N -0.888 5.888 13 Si 0.897 3.103 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.273 1.273 17 N -0.516 5.516 18 C 0.109 3.891 19 C 0.652 3.348 20 O -0.584 6.584 21 H 0.064 0.936 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.363 0.637 25 H 0.308 0.692 26 H 0.268 0.732 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.890 -1.961 -1.245 7.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.255 5.255 3 C -0.121 4.121 4 Cl 0.017 6.983 5 C 0.022 3.978 6 C 0.158 3.842 7 H 0.090 0.910 8 N -0.380 5.380 9 C -0.594 4.594 10 H 0.076 0.924 11 C -0.132 4.132 12 N -0.526 5.526 13 Si 0.725 3.275 14 H -0.205 1.205 15 H -0.209 1.209 16 H -0.198 1.198 17 N -0.234 5.234 18 C -0.033 4.033 19 C 0.355 3.645 20 O -0.465 6.465 21 H 0.083 0.917 22 H 0.100 0.900 23 H 0.098 0.902 24 H 0.181 0.819 25 H 0.119 0.881 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.709 -2.227 -1.647 8.192 hybrid contribution 1.247 -0.251 1.548 2.004 sum -6.462 -2.478 -0.099 6.921 Atomic orbital electron populations 1.21609 0.75934 1.03723 1.02617 1.45007 1.06905 1.04834 1.68762 1.19707 0.88266 0.82037 1.22053 1.98329 1.90295 1.11880 1.97828 1.20913 0.95115 0.82501 0.99249 1.17750 0.84918 0.93054 0.88473 0.90954 1.59545 1.31113 1.10646 1.36685 1.21737 1.05206 1.20163 1.12292 0.92387 1.24964 0.97655 0.94097 0.96436 1.69714 1.23702 1.22098 1.37062 0.86503 0.80349 0.78093 0.82580 1.20476 1.20941 1.19804 1.45210 1.06498 1.06227 1.65492 1.21745 0.85073 0.93038 1.03408 1.15986 0.81073 0.84292 0.83193 1.90973 1.77400 1.15782 1.62329 0.91731 0.89979 0.90238 0.81918 0.88135 0.92145 0.91234 0.89323 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.41 10.92 59.85 0.65 2.06 15 2 N -0.53 -9.78 3.18 -125.36 -0.40 -10.18 15 3 C 0.01 0.16 7.42 -16.28 -0.12 0.04 15 4 Cl -0.01 -0.19 28.02 -51.86 -1.45 -1.65 15 5 C 0.13 2.77 5.73 -81.22 -0.47 2.30 15 6 C 0.27 6.20 2.96 -70.01 -0.21 5.99 15 7 H 0.07 1.82 7.32 -51.93 -0.38 1.44 15 8 N -0.85 -18.71 9.22 -6.64 -0.06 -18.77 15 9 C -0.55 -13.62 7.87 -34.44 -0.27 -13.89 15 10 H 0.06 1.45 7.17 -52.49 -0.38 1.08 15 11 C 0.07 1.79 5.36 -17.82 -0.10 1.70 15 12 N -0.89 -22.63 11.50 55.43 0.64 -21.99 15 13 Si 0.90 19.63 29.54 -169.99 -5.02 14.61 15 14 H -0.28 -6.03 7.11 56.52 0.40 -5.62 15 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 17 N -0.52 -10.46 3.18 -124.15 -0.40 -10.85 15 18 C 0.11 1.91 9.79 59.84 0.59 2.49 15 19 C 0.65 13.50 8.52 -86.96 -0.74 12.76 15 20 O -0.58 -13.12 17.57 5.10 0.09 -13.03 15 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.08 1.07 8.08 -51.93 -0.42 0.65 15 23 H 0.08 0.93 7.88 -51.93 -0.41 0.52 15 24 H 0.36 8.55 6.96 -39.29 -0.27 8.27 15 25 H 0.31 6.36 6.41 -39.29 -0.25 6.11 15 26 H 0.27 6.58 8.31 -40.82 -0.34 6.24 15 27 H 0.07 1.20 7.83 -51.93 -0.41 0.79 15 28 H 0.09 1.51 5.59 -51.93 -0.29 1.22 15 29 H 0.08 1.19 7.98 -51.93 -0.41 0.78 15 LS Contribution 263.77 15.07 3.97 3.97 Total: -1.00 -28.07 263.77 -6.07 -34.13 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -2.78 Total: 10.31 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: -0.66 Total: 13.45 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.22 Total: -61.79 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.45 Total: -1.65 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.07 -6.07 -34.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260076823.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.467 kcal (2) G-P(sol) polarization free energy of solvation -28.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds