Wall clock time and date at job start Mon Mar 30 2020 04:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30689 * 1 3 3 Si 1.86796 * 120.00390 * 2 1 4 4 H 1.48494 * 109.47216 * 239.99989 * 3 2 1 5 5 H 1.48505 * 109.47090 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47284 * 119.99678 * 3 2 1 7 7 C 1.40078 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00193 * 180.02562 * 7 2 1 9 9 C 1.41558 * 120.00034 * 0.02562 * 7 2 1 10 10 N 1.33690 * 119.67033 * 359.97438 * 9 7 2 11 11 N 1.28694 * 121.38736 * 180.02562 * 10 9 7 12 12 C 1.32394 * 120.62013 * 359.97438 * 11 10 9 13 13 C 1.40254 * 119.30072 * 0.02562 * 12 11 10 14 14 C 1.48309 * 120.64442 * 179.97438 * 13 12 11 15 15 C 1.39415 * 120.11062 * 5.00231 * 14 13 12 16 16 C 1.37988 * 119.92618 * 180.02562 * 15 14 13 17 17 C 1.38319 * 120.15079 * 359.97438 * 16 15 14 18 18 C 1.38527 * 120.22998 * 0.02562 * 17 16 15 19 19 F 1.35096 * 119.96314 * 180.02562 * 18 17 16 20 20 C 1.38255 * 120.07035 * 359.97438 * 18 17 16 21 21 N 1.32875 * 118.71447 * 0.25093 * 13 12 11 22 22 H 0.97005 * 119.99677 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.34932 * 180.02562 * 12 11 10 24 24 H 1.07998 * 120.03459 * 359.74146 * 15 14 13 25 25 H 1.08001 * 119.92836 * 180.02562 * 16 15 14 26 26 H 1.08001 * 119.88390 * 180.02562 * 17 16 15 27 27 H 1.08001 * 120.07686 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6176 0.0000 4 1 3.0947 1.6963 -1.2124 5 1 1.2760 2.7465 -0.0006 6 1 3.0947 1.6963 1.2125 7 6 2.0072 -1.2131 0.0005 8 1 3.0872 -1.2132 0.0010 9 6 1.2994 -2.4390 0.0005 10 7 -0.0375 -2.4313 0.0005 11 7 -0.7141 -3.5260 0.0010 12 6 -0.0994 -4.6987 0.0010 13 6 1.3025 -4.7388 0.0011 14 6 2.0216 -6.0359 0.0017 15 6 1.3100 -7.2301 -0.1030 16 6 1.9829 -8.4348 -0.1015 17 6 3.3620 -8.4602 0.0030 18 6 4.0754 -7.2774 0.1073 19 9 5.4222 -7.3084 0.2085 20 6 3.4107 -6.0651 0.1068 21 7 1.9740 -3.5922 0.0062 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6716 -5.6147 0.0010 24 1 0.2330 -7.2126 -0.1804 25 1 1.4317 -9.3600 -0.1830 26 1 3.8843 -9.4055 0.0033 27 1 3.9667 -5.1429 0.1885 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260130240.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:23 Heat of formation + Delta-G solvation = 22.574637 kcal Electronic energy + Delta-G solvation = -16158.970921 eV Core-core repulsion = 13216.862130 eV Total energy + Delta-G solvation = -2942.108791 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.066 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.90909 -41.67901 -39.75351 -36.08341 -35.31320 -33.47586 -31.72835 -30.91345 -28.74788 -26.11408 -24.89096 -23.29547 -22.83520 -20.04646 -18.90084 -18.31152 -17.41821 -17.11635 -16.79365 -16.62520 -16.37622 -15.82334 -15.79325 -14.91950 -14.52239 -14.14638 -13.56533 -13.33686 -13.20194 -13.02558 -12.80805 -12.42331 -12.10761 -12.08802 -12.01826 -11.59164 -11.44894 -10.62636 -9.86331 -9.53628 -9.50766 -8.67051 -7.02195 -0.44879 0.20962 0.53741 0.88759 1.36918 1.50593 1.53422 2.13737 2.51379 2.74942 3.04527 3.30217 3.60618 3.72788 3.85880 3.97349 4.01855 4.23153 4.38600 4.42239 4.76879 4.86168 5.03067 5.11253 5.13134 5.30126 5.35882 5.50158 5.88077 5.90976 6.25009 6.38917 6.87970 8.17616 8.53013 Molecular weight = 245.07amu Principal moments of inertia in cm(-1) A = 0.032623 B = 0.005911 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.074112 B = 4736.107883 C = 5581.902602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.017 3.983 3 Si 1.009 2.991 4 H -0.254 1.254 5 H -0.259 1.259 6 H -0.254 1.254 7 C -0.413 4.413 8 H 0.101 0.899 9 C 0.290 3.710 10 N -0.331 5.331 11 N -0.218 5.218 12 C -0.148 4.148 13 C 0.183 3.817 14 C -0.033 4.033 15 C -0.098 4.098 16 C -0.079 4.079 17 C -0.130 4.130 18 C 0.076 3.924 19 F -0.147 7.147 20 C -0.134 4.134 21 N -0.553 5.553 22 H 0.294 0.706 23 H 0.192 0.808 24 H 0.158 0.842 25 H 0.185 0.815 26 H 0.171 0.829 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.319 -12.581 -0.219 13.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.207 4.207 3 Si 0.827 3.173 4 H -0.178 1.178 5 H -0.183 1.183 6 H -0.178 1.178 7 C -0.450 4.450 8 H 0.119 0.881 9 C 0.052 3.948 10 N -0.191 5.191 11 N -0.069 5.069 12 C -0.319 4.319 13 C 0.022 3.978 14 C -0.035 4.035 15 C -0.117 4.117 16 C -0.096 4.096 17 C -0.149 4.149 18 C 0.057 3.943 19 F -0.126 7.126 20 C -0.154 4.154 21 N -0.277 5.277 22 H 0.105 0.895 23 H 0.209 0.791 24 H 0.175 0.825 25 H 0.203 0.797 26 H 0.188 0.812 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.688 -11.386 -0.207 11.970 hybrid contribution 0.952 0.272 0.053 0.992 sum 4.640 -11.113 -0.153 12.044 Atomic orbital electron populations 1.70133 1.09242 1.30998 1.25976 1.27262 0.95975 1.05152 0.92326 0.84858 0.78403 0.73553 0.80510 1.17829 1.18251 1.17840 1.19780 0.95407 0.88275 1.41513 0.88143 1.21689 0.89178 0.92331 0.91563 1.74741 1.06582 1.15841 1.21914 1.73275 1.33905 0.96814 1.02920 1.24639 0.93519 0.99669 1.14042 1.21164 0.92396 0.93010 0.91208 1.18382 0.92126 0.90768 1.02239 1.21655 1.01858 0.90424 0.97805 1.21411 0.92896 0.98744 0.96555 1.21662 0.95517 0.97139 1.00570 1.17759 0.76976 0.94709 1.04835 1.91471 1.29845 1.97388 1.93889 1.21232 0.94743 0.97732 1.01714 1.69248 1.40210 0.98673 1.19546 0.89522 0.79147 0.82494 0.79745 0.81156 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -40.12 11.45 21.84 0.25 -39.87 15 2 C 0.02 0.88 5.50 85.31 0.47 1.35 15 3 Si 1.01 37.14 29.56 68.60 2.03 39.17 15 4 H -0.25 -9.01 7.11 99.48 0.71 -8.30 15 5 H -0.26 -8.81 7.11 99.48 0.71 -8.11 15 6 H -0.25 -9.02 7.11 99.48 0.71 -8.31 15 7 C -0.41 -23.12 9.39 23.54 0.22 -22.90 15 8 H 0.10 5.30 7.85 -2.91 -0.02 5.28 15 9 C 0.29 17.16 7.43 135.03 1.00 18.16 15 10 N -0.33 -20.02 9.06 -56.37 -0.51 -20.53 15 11 N -0.22 -11.88 11.63 -55.93 -0.65 -12.53 15 12 C -0.15 -6.66 10.75 85.10 0.91 -5.75 15 13 C 0.18 8.41 6.76 42.16 0.28 8.69 15 14 C -0.03 -1.18 5.87 -20.05 -0.12 -1.30 15 15 C -0.10 -2.39 9.44 22.49 0.21 -2.17 15 16 C -0.08 -1.35 10.03 22.23 0.22 -1.12 15 17 C -0.13 -2.53 10.02 22.36 0.22 -2.30 15 18 C 0.08 2.14 7.29 22.34 0.16 2.30 15 19 F -0.15 -4.27 17.26 44.97 0.78 -3.49 15 20 C -0.13 -4.68 9.57 22.54 0.22 -4.47 15 21 N -0.55 -29.92 9.65 -182.55 -1.76 -31.68 15 22 H 0.29 14.02 8.29 -92.70 -0.77 13.26 15 23 H 0.19 6.41 6.34 -2.91 -0.02 6.39 15 24 H 0.16 3.10 6.30 -2.91 -0.02 3.08 15 25 H 0.19 1.44 8.06 -2.91 -0.02 1.42 15 26 H 0.17 2.09 8.06 -2.91 -0.02 2.07 15 27 H 0.12 4.73 7.59 -2.91 -0.02 4.71 15 Total: -1.00 -72.11 254.46 5.17 -66.94 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.22 Total: 11.49 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 3.81 Total: -9.51 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -2.67 Total: -104.60 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.78 Total: -3.49 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Total: -72.11 5.17 -66.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130240.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.515 kcal (2) G-P(sol) polarization free energy of solvation -72.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds