Wall clock time and date at job start Mon Mar 30 2020 04:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99789 * 2 1 4 4 H 1.48504 * 109.47030 * 239.99815 * 3 2 1 5 5 H 1.48504 * 109.47388 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47347 * 119.99871 * 3 2 1 7 7 C 1.37877 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99666 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99993 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.63457 * 299.60935 * 9 7 2 11 11 C 1.53251 * 109.79337 * 179.10924 * 9 7 2 12 12 N 1.46468 * 109.85949 * 178.19853 * 11 9 7 13 13 C 1.46898 * 111.00107 * 197.76979 * 12 11 9 14 14 C 1.55882 * 110.82439 * 171.16158 * 13 12 11 15 15 S 1.83088 * 82.48281 * 217.28107 * 14 13 12 16 16 C 1.55976 * 110.86230 * 57.53560 * 13 12 11 17 17 C 1.46468 * 112.55796 * 72.66126 * 12 11 9 18 18 C 1.53253 * 109.85717 * 287.34046 * 17 12 11 19 19 S 1.81897 * 108.50306 * 62.00639 * 18 17 12 20 20 H 0.97000 * 120.00420 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.40188 * 58.08349 * 11 9 7 22 22 H 1.08994 * 109.41155 * 298.32273 * 11 9 7 23 23 H 1.08998 * 110.39675 * 294.33662 * 13 12 11 24 24 H 1.08998 * 114.38060 * 103.86797 * 14 13 12 25 25 H 1.09005 * 114.38011 * 330.69084 * 14 13 12 26 26 H 1.09007 * 114.33811 * 29.29489 * 16 13 12 27 27 H 1.08993 * 114.43560 * 256.10661 * 16 13 12 28 28 H 1.08993 * 109.40936 * 47.46517 * 17 12 11 29 29 H 1.09004 * 109.40547 * 167.30268 * 17 12 11 30 30 H 1.09001 * 109.62700 * 181.71004 * 18 17 12 31 31 H 1.09000 * 109.63468 * 302.29656 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6290 -2.5621 0.8945 11 6 2.2402 -3.6695 -0.0203 12 7 1.5104 -4.9386 0.0241 13 6 2.3952 -6.0409 0.4240 14 6 1.5767 -7.3414 0.6860 15 16 2.8028 -7.5556 2.0287 16 6 3.0475 -5.7543 1.8116 17 6 0.8324 -5.2414 -1.2384 18 6 -0.3815 -4.3220 -1.4109 19 16 0.2032 -2.6010 -1.4816 20 1 -0.4851 0.8400 -0.0004 21 1 2.9011 -3.6013 0.8438 22 1 2.8339 -3.6248 -0.9332 23 1 3.1586 -6.2100 -0.3354 24 1 1.6454 -8.0841 -0.1088 25 1 0.5570 -7.1695 1.0310 26 1 2.4418 -5.1349 2.4733 27 1 4.0913 -5.4444 1.7637 28 1 1.5239 -5.0876 -2.0668 29 1 0.5008 -6.2797 -1.2315 30 1 -0.9006 -4.5708 -2.3365 31 1 -1.0572 -4.4448 -0.5644 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260988945.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:30 Heat of formation + Delta-G solvation = 8.047243 kcal Electronic energy + Delta-G solvation = -14134.441139 eV Core-core repulsion = 11861.066769 eV Total energy + Delta-G solvation = -2273.374370 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 245.060 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.67404 -35.61289 -34.54215 -32.29308 -29.82949 -28.19076 -26.42692 -23.47143 -22.48498 -21.15893 -18.89859 -17.92917 -17.21738 -16.66739 -16.49865 -16.00558 -15.39785 -14.74034 -14.58318 -14.13182 -14.07666 -13.99792 -13.64038 -13.16609 -13.00402 -12.82701 -12.69719 -12.55809 -12.42313 -11.84184 -11.80048 -11.21953 -10.63514 -10.54020 -10.09925 -9.34571 -8.82175 -8.31726 -7.85531 -6.33287 0.67020 1.07186 1.34800 1.43055 1.52102 1.59732 2.35094 2.47166 2.82035 3.27220 3.35560 3.51903 3.97191 4.06845 4.26547 4.39125 4.47321 4.52014 4.52799 4.55978 4.64632 4.76519 4.85335 4.99011 5.03777 5.34238 5.62254 5.91431 6.06512 6.17381 6.66947 7.29034 8.83085 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.032699 B = 0.007019 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.088589 B = 3988.218582 C = 4642.065568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.024 3.976 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.131 3.869 10 H 0.010 0.990 11 C 0.082 3.918 12 N -0.551 5.551 13 C 0.064 3.936 14 C -0.038 4.038 15 S -0.349 6.349 16 C -0.049 4.049 17 C 0.068 3.932 18 C -0.080 4.080 19 S -0.372 6.372 20 H 0.264 0.736 21 H 0.082 0.918 22 H 0.029 0.971 23 H 0.078 0.922 24 H 0.132 0.868 25 H 0.114 0.886 26 H 0.105 0.895 27 H 0.120 0.880 28 H 0.037 0.963 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.871 -12.287 -0.146 12.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.183 4.183 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.090 0.910 9 C 0.005 3.995 10 H 0.028 0.972 11 C -0.048 4.048 12 N -0.277 5.277 13 C -0.046 4.046 14 C -0.187 4.187 15 S -0.124 6.124 16 C -0.197 4.197 17 C -0.061 4.061 18 C -0.228 4.228 19 S -0.142 6.142 20 H 0.074 0.926 21 H 0.100 0.900 22 H 0.047 0.953 23 H 0.096 0.904 24 H 0.150 0.850 25 H 0.132 0.868 26 H 0.124 0.876 27 H 0.139 0.861 28 H 0.056 0.944 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.555 -12.405 0.185 12.906 hybrid contribution 0.446 1.126 -0.318 1.252 sum 4.001 -11.280 -0.133 11.969 Atomic orbital electron populations 1.70195 1.07406 1.27710 1.45435 1.25904 0.95677 1.03007 0.93703 0.85548 0.78416 0.78264 0.79163 1.19666 1.20954 1.18702 1.21151 0.93472 0.90268 1.51816 0.91026 1.20532 0.93452 0.95188 0.90333 0.97216 1.22116 0.94841 0.87610 1.00221 1.61573 1.31460 1.02136 1.32496 1.24322 0.93775 0.89923 0.96551 1.24975 0.99335 0.97472 0.96881 1.88490 1.53178 1.14657 1.56105 1.24946 1.05209 0.91849 0.97735 1.22127 0.94615 0.99747 0.89601 1.23375 0.99944 0.95117 1.04397 1.87694 1.68054 1.15593 1.42886 0.92631 0.89974 0.95280 0.90389 0.84978 0.86755 0.87621 0.86117 0.94431 0.87587 0.87617 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.20 12.18 21.45 0.26 -49.94 16 2 C 0.02 1.29 5.28 84.65 0.45 1.73 16 3 Si 0.96 42.24 29.54 68.60 2.03 44.26 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 7 C -0.52 -27.85 8.58 25.60 0.22 -27.63 16 8 H 0.07 3.63 7.75 -2.91 -0.02 3.60 16 9 C 0.13 6.44 2.66 29.93 0.08 6.51 16 10 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 11 C 0.08 3.14 4.55 86.47 0.39 3.53 16 12 N -0.55 -17.25 4.32 -993.45 -4.29 -21.53 16 13 C 0.06 1.56 2.54 46.94 0.12 1.68 16 14 C -0.04 -0.78 7.29 72.98 0.53 -0.25 16 15 S -0.35 -8.53 24.06 -56.49 -1.36 -9.89 16 16 C -0.05 -1.20 7.02 73.01 0.51 -0.69 16 17 C 0.07 1.99 5.31 86.47 0.46 2.45 16 18 C -0.08 -2.82 6.69 72.07 0.48 -2.34 16 19 S -0.37 -18.10 20.40 -56.49 -1.15 -19.25 16 20 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 21 H 0.08 2.95 6.52 -2.39 -0.02 2.94 16 22 H 0.03 1.15 7.91 -2.39 -0.02 1.13 16 23 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 26 H 0.11 2.87 8.13 -2.38 -0.02 2.85 16 27 H 0.12 2.61 8.14 -2.39 -0.02 2.60 16 28 H 0.04 1.14 7.91 -2.39 -0.02 1.12 16 29 H 0.11 2.30 6.77 -2.38 -0.02 2.28 16 30 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -61.46 272.04 -0.16 -61.62 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.10 Total: 9.72 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 3.24 Total: -14.99 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: -4.03 Total: -71.47 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: -26.63 SS G_CDS: -2.51 Total: -29.14 kcal Total: -61.46 -0.16 -61.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260988945.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.666 kcal (2) G-P(sol) polarization free energy of solvation -61.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds