Wall clock time and date at job start Mon Mar 30 2020 04:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99813 * 2 1 4 4 H 1.48507 * 109.47056 * 240.00047 * 3 2 1 5 5 H 1.48503 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47150 * 120.00105 * 3 2 1 7 7 C 1.37874 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99551 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00266 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47382 * 299.99941 * 9 7 2 11 11 N 1.46896 * 109.47316 * 60.00146 * 9 7 2 12 12 C 1.50708 * 109.47041 * 179.97438 * 9 7 2 13 13 C 1.34536 * 118.57346 * 100.02607 * 12 9 7 14 14 C 1.41999 * 119.59057 * 179.97438 * 13 12 9 15 15 O 1.21917 * 121.41025 * 180.02562 * 14 13 12 16 16 C 1.47571 * 117.18636 * 0.03663 * 14 13 12 17 17 C 1.39386 * 121.49522 * 179.97438 * 16 14 13 18 18 C 1.37765 * 119.53444 * 180.02562 * 17 16 14 19 19 C 1.38760 * 120.29845 * 359.97438 * 18 17 16 20 20 C 1.37838 * 120.71353 * 359.97438 * 19 18 17 21 21 C 1.38983 * 119.90094 * 0.03568 * 20 19 18 22 22 O 1.33720 * 118.57341 * 280.00003 * 12 9 7 23 23 H 0.97005 * 119.99797 * 0.02562 * 1 2 3 24 24 H 1.00907 * 111.00325 * 59.99484 * 11 9 7 25 25 H 1.00897 * 111.00348 * 183.95598 * 11 9 7 26 26 H 1.07998 * 120.20056 * 359.97438 * 13 12 9 27 27 H 1.07998 * 120.23510 * 0.02562 * 17 16 14 28 28 H 1.08001 * 119.85264 * 179.72134 * 18 17 16 29 29 H 1.07995 * 119.64355 * 180.02562 * 19 18 17 30 30 H 1.07997 * 120.04844 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2304 -3.6446 0.0005 13 6 2.4922 -4.2673 1.1640 14 6 3.4110 -5.3497 1.1887 15 8 3.6723 -5.9378 2.2242 16 6 4.0365 -5.7324 -0.0919 17 6 4.9514 -6.7811 -0.1707 18 6 5.5114 -7.1038 -1.3873 19 6 5.1676 -6.3911 -2.5273 20 6 4.2634 -5.3528 -2.4624 21 6 3.6871 -5.0110 -1.2448 22 8 2.8010 -3.9982 -1.1560 23 1 -0.4850 0.8401 -0.0004 24 1 0.9653 -2.5259 -2.0382 25 1 -0.1570 -3.4138 -1.1907 26 1 2.0064 -3.9460 2.0735 27 1 5.2195 -7.3367 0.7158 28 1 6.2243 -7.9124 -1.4535 29 1 5.6127 -6.6534 -3.4756 30 1 4.0039 -4.8052 -3.3563 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261061487.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:43 Heat of formation + Delta-G solvation = -22.749414 kcal Electronic energy + Delta-G solvation = -17019.570505 eV Core-core repulsion = 14166.663870 eV Total energy + Delta-G solvation = -2852.906635 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.48248 -38.38972 -37.80100 -34.98152 -32.26209 -31.55411 -30.59200 -30.20367 -26.45956 -24.34481 -23.97899 -22.21591 -20.98312 -19.03267 -17.91316 -16.90261 -16.46379 -15.68091 -15.32120 -15.00284 -14.70007 -14.34701 -14.09313 -13.88549 -13.62711 -13.30595 -12.69591 -12.34890 -12.25099 -12.03587 -11.58298 -11.12815 -10.93155 -10.84408 -10.20713 -9.66741 -9.39903 -9.15916 -8.88891 -8.62132 -8.03441 -7.45284 -6.09930 -4.28254 0.74771 1.08697 1.86148 2.74241 3.17669 3.26611 3.31238 3.34487 4.04151 4.33602 4.41489 4.60510 4.82223 5.12882 5.15286 5.19395 5.24321 5.51586 5.78435 5.84010 6.01785 6.05359 6.12038 6.28531 6.42912 6.56917 6.72579 6.92170 7.65446 7.69731 7.83000 8.04567 8.32295 8.71455 8.82873 9.41785 10.94121 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.029623 B = 0.006572 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.988701 B = 4259.670189 C = 4527.264742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.089 3.911 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.268 3.732 10 H 0.082 0.918 11 N -0.806 5.806 12 C 0.171 3.829 13 C -0.359 4.359 14 C 0.422 3.578 15 O -0.497 6.497 16 C -0.226 4.226 17 C -0.034 4.034 18 C -0.161 4.161 19 C -0.065 4.065 20 C -0.145 4.145 21 C 0.147 3.853 22 O -0.213 6.213 23 H 0.262 0.738 24 H 0.330 0.670 25 H 0.304 0.696 26 H 0.155 0.845 27 H 0.137 0.863 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.972 -10.341 -5.734 13.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.120 4.120 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.157 3.843 10 H 0.099 0.901 11 N -0.331 5.331 12 C 0.120 3.880 13 C -0.380 4.380 14 C 0.311 3.689 15 O -0.382 6.382 16 C -0.227 4.227 17 C -0.053 4.053 18 C -0.179 4.179 19 C -0.083 4.083 20 C -0.163 4.163 21 C 0.101 3.899 22 O -0.117 6.117 23 H 0.072 0.928 24 H 0.142 0.858 25 H 0.115 0.885 26 H 0.173 0.827 27 H 0.155 0.845 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.495 -9.703 -5.166 12.768 hybrid contribution 1.123 -0.031 -0.086 1.126 sum 7.618 -9.734 -5.252 13.430 Atomic orbital electron populations 1.70068 1.05740 1.26606 1.45051 1.24890 0.94766 0.98779 0.93535 0.86641 0.79668 0.82734 0.78817 1.20099 1.21022 1.20070 1.20640 0.92459 0.88595 1.56576 0.92340 1.18878 0.85820 0.86578 0.92980 0.90054 1.59003 1.27634 1.42120 1.04374 1.25323 0.88611 0.92220 0.81850 1.22379 1.10934 1.04760 0.99888 1.18682 0.80266 0.83103 0.86850 1.90638 1.60336 1.53748 1.33449 1.21029 1.04569 1.01413 0.95738 1.21083 0.92261 0.93592 0.98327 1.21136 1.02479 1.01874 0.92445 1.21106 0.94921 0.93354 0.98882 1.20489 0.99887 1.00334 0.95633 1.19531 0.89355 0.86728 0.94246 1.83097 1.49286 1.44464 1.34808 0.92827 0.85776 0.88525 0.82693 0.84531 0.85205 0.84719 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.98 12.77 55.43 0.71 -22.28 16 2 C 0.09 2.34 5.39 -17.82 -0.10 2.24 16 3 Si 0.89 20.43 29.54 -169.99 -5.02 15.40 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.12 8.71 -34.45 -0.30 -14.42 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.27 6.18 2.88 -70.02 -0.20 5.98 16 10 H 0.08 2.00 7.88 -51.93 -0.41 1.59 16 11 N -0.81 -17.46 8.46 -6.65 -0.06 -17.52 16 12 C 0.17 3.53 5.82 -35.61 -0.21 3.32 16 13 C -0.36 -7.34 9.54 -39.45 -0.38 -7.72 16 14 C 0.42 8.54 7.00 -34.34 -0.24 8.30 16 15 O -0.50 -10.88 17.40 4.99 0.09 -10.79 16 16 C -0.23 -3.95 5.89 -104.84 -0.62 -4.57 16 17 C -0.03 -0.50 9.67 -39.33 -0.38 -0.88 16 18 C -0.16 -1.81 10.03 -39.56 -0.40 -2.21 16 19 C -0.06 -0.69 10.01 -39.53 -0.40 -1.09 16 20 C -0.15 -1.91 10.01 -39.45 -0.39 -2.30 16 21 C 0.15 2.48 6.77 -38.48 -0.26 2.22 16 22 O -0.21 -4.04 9.01 5.67 0.05 -3.99 16 23 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 24 H 0.33 6.88 8.49 -39.29 -0.33 6.55 16 25 H 0.30 5.79 9.06 -39.29 -0.36 5.44 16 26 H 0.16 3.12 7.93 -52.49 -0.42 2.71 16 27 H 0.14 1.85 7.81 -52.49 -0.41 1.44 16 28 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 30 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 271.62 15.07 4.09 4.09 Total: -1.00 -29.53 271.62 -6.74 -36.27 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -2.73 Total: 9.93 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -3.87 Total: -11.12 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.65 Total: -39.80 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.14 Total: -14.78 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.53 -6.74 -36.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261061487.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.518 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds