Wall clock time and date at job start Mon Mar 30 2020 04:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99813 * 2 1 4 4 H 1.48507 * 109.47056 * 240.00047 * 3 2 1 5 5 H 1.48503 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47150 * 120.00105 * 3 2 1 7 7 C 1.37874 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99551 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00266 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47382 * 299.99941 * 9 7 2 11 11 N 1.46896 * 109.47316 * 60.00146 * 9 7 2 12 12 C 1.50708 * 109.47041 * 179.97438 * 9 7 2 13 13 C 1.34536 * 118.57346 * 100.02607 * 12 9 7 14 14 C 1.41999 * 119.59057 * 179.97438 * 13 12 9 15 15 O 1.21917 * 121.41025 * 180.02562 * 14 13 12 16 16 C 1.47571 * 117.18636 * 0.03663 * 14 13 12 17 17 C 1.39386 * 121.49522 * 179.97438 * 16 14 13 18 18 C 1.37765 * 119.53444 * 180.02562 * 17 16 14 19 19 C 1.38760 * 120.29845 * 359.97438 * 18 17 16 20 20 C 1.37838 * 120.71353 * 359.97438 * 19 18 17 21 21 C 1.38983 * 119.90094 * 0.03568 * 20 19 18 22 22 O 1.33720 * 118.57341 * 280.00003 * 12 9 7 23 23 H 0.97005 * 119.99797 * 0.02562 * 1 2 3 24 24 H 1.00907 * 111.00325 * 59.99484 * 11 9 7 25 25 H 1.00897 * 111.00348 * 183.95598 * 11 9 7 26 26 H 1.07998 * 120.20056 * 359.97438 * 13 12 9 27 27 H 1.07998 * 120.23510 * 0.02562 * 17 16 14 28 28 H 1.08001 * 119.85264 * 179.72134 * 18 17 16 29 29 H 1.07995 * 119.64355 * 180.02562 * 19 18 17 30 30 H 1.07997 * 120.04844 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2304 -3.6446 0.0005 13 6 2.4922 -4.2673 1.1640 14 6 3.4110 -5.3497 1.1887 15 8 3.6723 -5.9378 2.2242 16 6 4.0365 -5.7324 -0.0919 17 6 4.9514 -6.7811 -0.1707 18 6 5.5114 -7.1038 -1.3873 19 6 5.1676 -6.3911 -2.5273 20 6 4.2634 -5.3528 -2.4624 21 6 3.6871 -5.0110 -1.2448 22 8 2.8010 -3.9982 -1.1560 23 1 -0.4850 0.8401 -0.0004 24 1 0.9653 -2.5259 -2.0382 25 1 -0.1570 -3.4138 -1.1907 26 1 2.0064 -3.9460 2.0735 27 1 5.2195 -7.3367 0.7158 28 1 6.2243 -7.9124 -1.4535 29 1 5.6127 -6.6534 -3.4756 30 1 4.0039 -4.8052 -3.3563 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261061487.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:42 Heat of formation + Delta-G solvation = -42.507125 kcal Electronic energy + Delta-G solvation = -17020.427264 eV Core-core repulsion = 14166.663870 eV Total energy + Delta-G solvation = -2853.763394 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.87827 -39.82268 -39.08973 -36.72952 -34.02872 -33.15712 -31.78122 -31.51035 -28.32928 -25.96394 -25.24713 -23.45459 -22.65900 -20.30157 -19.24921 -18.74964 -17.97338 -17.19951 -16.75140 -16.52910 -16.26964 -15.88146 -15.39428 -15.21486 -15.12535 -14.84435 -14.50562 -13.72362 -13.50470 -13.42885 -13.04948 -12.78148 -12.73898 -12.19917 -12.05015 -11.54241 -10.93667 -10.64745 -10.43075 -10.16963 -9.40715 -9.18874 -8.10409 -6.34706 -0.49459 -0.13359 0.49846 1.33074 1.45249 1.45579 1.53336 1.89984 2.42359 2.75874 3.06606 3.15697 3.41276 3.67539 3.94238 4.09314 4.20046 4.24708 4.33779 4.41888 4.71694 4.85089 4.93271 5.00974 5.07130 5.28193 5.35057 5.62303 5.69528 5.85727 6.24565 6.46859 6.51197 6.88519 7.06069 7.38299 8.93137 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.029623 B = 0.006572 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.988701 B = 4259.670189 C = 4527.264742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.046 3.954 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.559 4.559 8 H 0.049 0.951 9 C 0.272 3.728 10 H 0.058 0.942 11 N -0.811 5.811 12 C 0.180 3.820 13 C -0.374 4.374 14 C 0.414 3.586 15 O -0.528 6.528 16 C -0.251 4.251 17 C -0.049 4.049 18 C -0.139 4.139 19 C -0.043 4.043 20 C -0.143 4.143 21 C 0.115 3.885 22 O -0.217 6.217 23 H 0.263 0.737 24 H 0.335 0.665 25 H 0.319 0.681 26 H 0.145 0.855 27 H 0.138 0.862 28 H 0.173 0.827 29 H 0.186 0.814 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.075 -11.441 -8.246 16.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.160 4.160 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.598 4.598 8 H 0.067 0.933 9 C 0.161 3.839 10 H 0.076 0.924 11 N -0.338 5.338 12 C 0.127 3.873 13 C -0.395 4.395 14 C 0.306 3.694 15 O -0.416 6.416 16 C -0.253 4.253 17 C -0.067 4.067 18 C -0.157 4.157 19 C -0.060 4.060 20 C -0.161 4.161 21 C 0.071 3.929 22 O -0.121 6.121 23 H 0.072 0.928 24 H 0.148 0.852 25 H 0.131 0.869 26 H 0.163 0.837 27 H 0.156 0.844 28 H 0.191 0.809 29 H 0.204 0.796 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.604 -10.814 -7.697 15.818 hybrid contribution 0.562 0.168 0.586 0.829 sum 9.166 -10.647 -7.112 15.746 Atomic orbital electron populations 1.70169 1.06903 1.27292 1.46029 1.25573 0.95509 1.01676 0.93200 0.85711 0.78525 0.79155 0.78748 1.19562 1.20441 1.20062 1.20876 0.92232 0.90152 1.56490 0.93303 1.18474 0.86116 0.86707 0.92633 0.92445 1.58834 1.27740 1.43257 1.03979 1.24686 0.88497 0.91605 0.82476 1.22417 1.11713 1.05676 0.99709 1.18961 0.79991 0.82503 0.87963 1.90598 1.61582 1.54729 1.34697 1.20925 1.06462 1.03556 0.94337 1.21290 0.92176 0.92985 1.00217 1.21663 1.01266 1.01853 0.90907 1.21739 0.92587 0.90936 1.00735 1.20945 0.99542 1.00978 0.94646 1.20006 0.90297 0.86893 0.95732 1.83017 1.49943 1.45620 1.33500 0.92828 0.85237 0.86906 0.83707 0.84449 0.80912 0.79637 0.81973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.20 12.77 21.45 0.27 -47.92 16 2 C 0.05 2.46 5.39 84.65 0.46 2.91 16 3 Si 0.95 42.11 29.54 68.60 2.03 44.14 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.56 -29.68 8.71 25.60 0.22 -29.46 16 8 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 9 C 0.27 13.00 2.88 43.42 0.13 13.12 16 10 H 0.06 3.00 7.88 -2.39 -0.02 2.98 16 11 N -0.81 -35.77 8.46 -174.96 -1.48 -37.25 16 12 C 0.18 7.69 5.82 24.84 0.14 7.83 16 13 C -0.37 -16.24 9.54 22.35 0.21 -16.03 16 14 C 0.41 17.49 7.00 25.67 0.18 17.67 16 15 O -0.53 -24.22 17.40 -5.05 -0.09 -24.31 16 16 C -0.25 -8.74 5.89 -20.01 -0.12 -8.86 16 17 C -0.05 -1.30 9.67 22.43 0.22 -1.08 16 18 C -0.14 -2.43 10.03 22.28 0.22 -2.20 16 19 C -0.04 -0.66 10.01 22.30 0.22 -0.44 16 20 C -0.14 -3.24 10.01 22.35 0.22 -3.02 16 21 C 0.12 3.78 6.77 22.98 0.16 3.93 16 22 O -0.22 -8.30 9.01 -2.61 -0.02 -8.32 16 23 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 24 H 0.33 14.05 8.49 -89.69 -0.76 13.29 16 25 H 0.32 12.35 9.06 -89.70 -0.81 11.54 16 26 H 0.15 6.36 7.93 -2.91 -0.02 6.34 16 27 H 0.14 3.58 7.81 -2.91 -0.02 3.56 16 28 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 29 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 30 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -66.41 271.62 2.59 -63.81 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -0.38 Total: 25.48 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 2.27 Total: -15.62 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -1.21 Total: -85.17 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.11 Total: -32.63 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -66.41 2.59 -63.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261061487.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.306 kcal (2) G-P(sol) polarization free energy of solvation -66.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds