Wall clock time and date at job start Mon Mar 30 2020 04:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00118 * 2 1 4 4 H 1.48500 * 109.47200 * 269.99783 * 3 2 1 5 5 H 1.48500 * 109.47192 * 30.00257 * 3 2 1 6 6 H 1.48511 * 109.47122 * 150.00095 * 3 2 1 7 7 C 1.37877 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99726 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00183 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47601 * 59.99659 * 9 7 2 11 11 N 1.46902 * 109.46882 * 299.99778 * 9 7 2 12 12 C 1.50698 * 109.47314 * 180.02562 * 9 7 2 13 13 C 1.34536 * 118.57189 * 259.97751 * 12 9 7 14 14 C 1.42005 * 119.59238 * 180.02562 * 13 12 9 15 15 O 1.21917 * 121.41191 * 180.02562 * 14 13 12 16 16 C 1.47571 * 117.18422 * 359.95317 * 14 13 12 17 17 C 1.39386 * 121.49486 * 180.02562 * 16 14 13 18 18 C 1.37765 * 119.53444 * 179.97438 * 17 16 14 19 19 C 1.38752 * 120.30058 * 359.97438 * 18 17 16 20 20 C 1.37839 * 120.71139 * 0.02562 * 19 18 17 21 21 C 1.38983 * 119.90472 * 359.95400 * 20 19 18 22 22 O 1.33719 * 118.57854 * 79.99799 * 12 9 7 23 23 H 0.97001 * 119.99856 * 359.97438 * 1 2 3 24 24 H 1.00903 * 111.00302 * 300.00252 * 11 9 7 25 25 H 1.00895 * 110.99875 * 63.95137 * 11 9 7 26 26 H 1.07996 * 120.20664 * 0.05887 * 13 12 9 27 27 H 1.07997 * 120.23505 * 359.95467 * 17 16 14 28 28 H 1.08001 * 119.85264 * 179.72134 * 18 17 16 29 29 H 1.07995 * 119.65098 * 180.02562 * 19 18 17 30 30 H 1.08006 * 120.05108 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6246 -2.5564 -0.8919 11 7 0.4060 -2.5777 1.1974 12 6 2.2302 -3.6446 -0.0015 13 6 2.4929 -4.2668 -1.1650 14 6 3.4118 -5.3492 -1.1896 15 8 3.6746 -5.9362 -2.2253 16 6 4.0364 -5.7325 0.0913 17 6 4.9512 -6.7812 0.1703 18 6 5.5103 -7.1044 1.3872 19 6 5.1667 -6.3916 2.5269 20 6 4.2633 -5.3526 2.4617 21 6 3.6880 -5.0100 1.2438 22 8 2.8000 -3.9988 1.1553 23 1 -0.4850 0.8401 0.0004 24 1 0.9637 -2.5269 2.0368 25 1 -0.3013 -1.8582 1.1891 26 1 2.0084 -3.9447 -2.0749 27 1 5.2196 -7.3367 -0.7162 28 1 6.2163 -7.9189 1.4551 29 1 5.6117 -6.6537 3.4754 30 1 4.0032 -4.8051 3.3557 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261061496.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:44 Heat of formation + Delta-G solvation = -30.779027 kcal Electronic energy + Delta-G solvation = -17019.278719 eV Core-core repulsion = 14166.023893 eV Total energy + Delta-G solvation = -2853.254825 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.39239 -38.30199 -37.72685 -35.11597 -32.34337 -31.43500 -30.51401 -30.12557 -26.44182 -24.44533 -23.90457 -22.17169 -20.95397 -18.96724 -17.83063 -16.98375 -16.42807 -15.62944 -15.25377 -15.20222 -14.70869 -14.25784 -14.03483 -13.74124 -13.55106 -13.05879 -12.78830 -12.24241 -12.07983 -11.94900 -11.56067 -11.22740 -11.06736 -10.86068 -10.28698 -10.26550 -9.22793 -9.13730 -9.00214 -8.81984 -7.98338 -7.50722 -6.35459 -4.53835 0.82342 1.16443 1.96066 2.83517 3.11930 3.19380 3.22100 3.26522 4.09588 4.18519 4.48367 4.67632 4.87133 4.90435 5.19555 5.25636 5.29156 5.53127 5.85725 5.91990 6.09995 6.18329 6.31891 6.35138 6.52253 6.63199 6.76907 7.03737 7.49289 7.63913 7.89423 8.12424 8.32777 8.60262 8.83669 9.19022 10.63545 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.029747 B = 0.006564 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.032043 B = 4264.618973 C = 4536.454066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.558 4.558 8 H 0.061 0.939 9 C 0.250 3.750 10 H 0.081 0.919 11 N -0.848 5.848 12 C 0.228 3.772 13 C -0.365 4.365 14 C 0.425 3.575 15 O -0.499 6.499 16 C -0.226 4.226 17 C -0.034 4.034 18 C -0.162 4.162 19 C -0.065 4.065 20 C -0.145 4.145 21 C 0.150 3.850 22 O -0.207 6.207 23 H 0.271 0.729 24 H 0.322 0.678 25 H 0.363 0.637 26 H 0.155 0.845 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.995 -8.413 5.828 12.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.597 4.597 8 H 0.080 0.920 9 C 0.139 3.861 10 H 0.099 0.901 11 N -0.379 5.379 12 C 0.179 3.821 13 C -0.385 4.385 14 C 0.314 3.686 15 O -0.384 6.384 16 C -0.228 4.228 17 C -0.052 4.052 18 C -0.181 4.181 19 C -0.083 4.083 20 C -0.163 4.163 21 C 0.104 3.896 22 O -0.110 6.110 23 H 0.081 0.919 24 H 0.132 0.868 25 H 0.181 0.819 26 H 0.172 0.828 27 H 0.154 0.846 28 H 0.147 0.853 29 H 0.152 0.848 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.666 -9.182 5.238 12.497 hybrid contribution 0.881 1.890 0.011 2.085 sum 7.547 -7.292 5.249 11.734 Atomic orbital electron populations 1.69714 1.05914 1.28005 1.48933 1.24977 0.95056 0.99586 0.93534 0.86346 0.79737 0.82003 0.78577 1.20160 1.20809 1.19659 1.21618 0.93901 0.90094 1.54075 0.92045 1.18494 0.87828 0.85835 0.93907 0.90109 1.59487 1.18262 1.56357 1.03842 1.23548 0.86937 0.90084 0.81570 1.22265 1.11477 1.05021 0.99769 1.18603 0.80123 0.83035 0.86851 1.90633 1.60394 1.53908 1.33467 1.21027 1.04581 1.01429 0.95774 1.21070 0.92262 0.93612 0.98305 1.21118 1.02615 1.01859 0.92465 1.21091 0.94970 0.93423 0.98829 1.20481 0.99877 1.00323 0.95617 1.19521 0.89100 0.86755 0.94236 1.83115 1.48865 1.44379 1.34627 0.91875 0.86823 0.81932 0.82777 0.84569 0.85278 0.84784 0.84088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.82 11.54 55.43 0.64 -22.18 16 2 C 0.07 1.84 5.38 -17.82 -0.10 1.74 16 3 Si 0.91 19.93 29.54 -169.99 -5.02 14.90 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.56 -14.16 8.71 -34.44 -0.30 -14.46 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.25 5.86 2.98 -70.02 -0.21 5.65 16 10 H 0.08 2.02 7.88 -51.93 -0.41 1.61 16 11 N -0.85 -18.94 9.11 -6.65 -0.06 -19.00 16 12 C 0.23 4.90 5.83 -35.62 -0.21 4.69 16 13 C -0.36 -7.70 9.54 -39.45 -0.38 -8.08 16 14 C 0.42 8.80 7.00 -34.33 -0.24 8.56 16 15 O -0.50 -11.11 17.40 4.99 0.09 -11.02 16 16 C -0.23 -4.07 5.89 -104.84 -0.62 -4.69 16 17 C -0.03 -0.51 9.67 -39.33 -0.38 -0.89 16 18 C -0.16 -1.88 10.03 -39.56 -0.40 -2.28 16 19 C -0.07 -0.72 10.01 -39.54 -0.40 -1.12 16 20 C -0.14 -1.97 10.01 -39.45 -0.39 -2.36 16 21 C 0.15 2.62 6.77 -38.48 -0.26 2.35 16 22 O -0.21 -4.10 9.01 5.68 0.05 -4.05 16 23 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 24 H 0.32 6.90 8.49 -39.29 -0.33 6.57 16 25 H 0.36 8.56 7.08 -39.29 -0.28 8.28 16 26 H 0.15 3.19 7.93 -52.49 -0.42 2.77 16 27 H 0.14 1.89 7.81 -52.49 -0.41 1.48 16 28 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 269.16 15.07 4.06 4.06 Total: -1.00 -27.72 269.16 -6.78 -34.50 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -2.66 Total: 13.67 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -3.87 Total: -10.88 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.58 Total: -41.18 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.14 Total: -15.08 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.72 -6.78 -34.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261061496.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.723 kcal (2) G-P(sol) polarization free energy of solvation -27.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds