Wall clock time and date at job start Mon Mar 30 2020 04:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00118 * 2 1 4 4 H 1.48500 * 109.47200 * 269.99783 * 3 2 1 5 5 H 1.48500 * 109.47192 * 30.00257 * 3 2 1 6 6 H 1.48511 * 109.47122 * 150.00095 * 3 2 1 7 7 C 1.37877 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99726 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00183 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47601 * 59.99659 * 9 7 2 11 11 N 1.46902 * 109.46882 * 299.99778 * 9 7 2 12 12 C 1.50698 * 109.47314 * 180.02562 * 9 7 2 13 13 C 1.34536 * 118.57189 * 259.97751 * 12 9 7 14 14 C 1.42005 * 119.59238 * 180.02562 * 13 12 9 15 15 O 1.21917 * 121.41191 * 180.02562 * 14 13 12 16 16 C 1.47571 * 117.18422 * 359.95317 * 14 13 12 17 17 C 1.39386 * 121.49486 * 180.02562 * 16 14 13 18 18 C 1.37765 * 119.53444 * 179.97438 * 17 16 14 19 19 C 1.38752 * 120.30058 * 359.97438 * 18 17 16 20 20 C 1.37839 * 120.71139 * 0.02562 * 19 18 17 21 21 C 1.38983 * 119.90472 * 359.95400 * 20 19 18 22 22 O 1.33719 * 118.57854 * 79.99799 * 12 9 7 23 23 H 0.97001 * 119.99856 * 359.97438 * 1 2 3 24 24 H 1.00903 * 111.00302 * 300.00252 * 11 9 7 25 25 H 1.00895 * 110.99875 * 63.95137 * 11 9 7 26 26 H 1.07996 * 120.20664 * 0.05887 * 13 12 9 27 27 H 1.07997 * 120.23505 * 359.95467 * 17 16 14 28 28 H 1.08001 * 119.85264 * 179.72134 * 18 17 16 29 29 H 1.07995 * 119.65098 * 180.02562 * 19 18 17 30 30 H 1.08006 * 120.05108 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6246 -2.5564 -0.8919 11 7 0.4060 -2.5777 1.1974 12 6 2.2302 -3.6446 -0.0015 13 6 2.4929 -4.2668 -1.1650 14 6 3.4118 -5.3492 -1.1896 15 8 3.6746 -5.9362 -2.2253 16 6 4.0364 -5.7325 0.0913 17 6 4.9512 -6.7812 0.1703 18 6 5.5103 -7.1044 1.3872 19 6 5.1667 -6.3916 2.5269 20 6 4.2633 -5.3526 2.4617 21 6 3.6880 -5.0100 1.2438 22 8 2.8000 -3.9988 1.1553 23 1 -0.4850 0.8401 0.0004 24 1 0.9637 -2.5269 2.0368 25 1 -0.3013 -1.8582 1.1891 26 1 2.0084 -3.9447 -2.0749 27 1 5.2196 -7.3367 -0.7162 28 1 6.2163 -7.9189 1.4551 29 1 5.6117 -6.6537 3.4754 30 1 4.0032 -4.8051 3.3557 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261061496.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:44 Heat of formation + Delta-G solvation = -48.733001 kcal Electronic energy + Delta-G solvation = -17020.057262 eV Core-core repulsion = 14166.023893 eV Total energy + Delta-G solvation = -2854.033368 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.82913 -39.77599 -39.05143 -36.90660 -34.07786 -33.03357 -31.74868 -31.49316 -28.30098 -26.08937 -25.21146 -23.43462 -22.63636 -20.27255 -19.20871 -18.85504 -17.99816 -17.18264 -16.83844 -16.61724 -16.22731 -15.75414 -15.34163 -15.18356 -14.96049 -14.86204 -14.41468 -13.63070 -13.55709 -13.28665 -13.02830 -12.94329 -12.82994 -12.30704 -12.08385 -11.96945 -10.86811 -10.81159 -10.46389 -10.14732 -9.43447 -9.33036 -8.28080 -6.54537 -0.45051 -0.09231 0.54851 1.36631 1.38324 1.40596 1.49725 1.93508 2.31549 2.79676 2.93045 3.10056 3.44740 3.63803 3.95530 4.11913 4.24362 4.36298 4.42824 4.46272 4.74207 4.87059 4.93588 5.06471 5.14127 5.31851 5.38299 5.49948 5.71243 5.75870 6.32665 6.42530 6.53697 6.68619 6.96690 7.22114 8.69224 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.029747 B = 0.006564 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.032043 B = 4264.618973 C = 4536.454066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.034 3.966 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.575 4.575 8 H 0.050 0.950 9 C 0.251 3.749 10 H 0.056 0.944 11 N -0.839 5.839 12 C 0.230 3.770 13 C -0.380 4.380 14 C 0.417 3.583 15 O -0.528 6.528 16 C -0.252 4.252 17 C -0.048 4.048 18 C -0.140 4.140 19 C -0.042 4.042 20 C -0.143 4.143 21 C 0.116 3.884 22 O -0.213 6.213 23 H 0.275 0.725 24 H 0.328 0.672 25 H 0.356 0.644 26 H 0.145 0.855 27 H 0.138 0.862 28 H 0.174 0.826 29 H 0.187 0.813 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.086 -9.347 8.296 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.168 4.168 3 Si 0.790 3.210 4 H -0.202 1.202 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.614 4.614 8 H 0.069 0.931 9 C 0.141 3.859 10 H 0.074 0.926 11 N -0.369 5.369 12 C 0.180 3.820 13 C -0.401 4.401 14 C 0.309 3.691 15 O -0.417 6.417 16 C -0.253 4.253 17 C -0.066 4.066 18 C -0.157 4.157 19 C -0.060 4.060 20 C -0.161 4.161 21 C 0.071 3.929 22 O -0.116 6.116 23 H 0.085 0.915 24 H 0.138 0.862 25 H 0.173 0.827 26 H 0.163 0.837 27 H 0.156 0.844 28 H 0.191 0.809 29 H 0.204 0.796 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.762 -10.128 7.727 15.461 hybrid contribution 0.309 2.061 -0.651 2.183 sum 9.071 -8.067 7.076 14.051 Atomic orbital electron populations 1.69790 1.06821 1.28865 1.48907 1.25658 0.95837 1.02268 0.93040 0.85436 0.78591 0.78533 0.78402 1.20200 1.19847 1.19614 1.21759 0.93501 0.91340 1.54803 0.93137 1.18236 0.87974 0.86346 0.93360 0.92588 1.59431 1.17921 1.55821 1.03739 1.23071 0.86975 0.89682 0.82291 1.22324 1.12279 1.05944 0.99554 1.18874 0.79835 0.82414 0.87996 1.90592 1.61580 1.54827 1.34672 1.20923 1.06499 1.03584 0.94323 1.21285 0.92123 0.92943 1.00249 1.21656 1.01339 1.01849 0.90893 1.21732 0.92574 0.90944 1.00737 1.20944 0.99579 1.01009 0.94587 1.20027 0.90080 0.86945 0.95817 1.83032 1.49629 1.45625 1.33362 0.91541 0.86159 0.82717 0.83736 0.84388 0.80878 0.79617 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.07 11.54 21.45 0.25 -46.82 16 2 C 0.03 1.75 5.38 84.65 0.46 2.21 16 3 Si 0.97 40.87 29.54 68.60 2.03 42.90 16 4 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.57 -29.97 8.71 25.60 0.22 -29.75 16 8 H 0.05 2.69 7.74 -2.91 -0.02 2.66 16 9 C 0.25 12.31 2.98 43.42 0.13 12.44 16 10 H 0.06 2.98 7.88 -2.39 -0.02 2.96 16 11 N -0.84 -38.36 9.11 -174.95 -1.59 -39.96 16 12 C 0.23 10.33 5.83 24.84 0.14 10.47 16 13 C -0.38 -17.10 9.54 22.36 0.21 -16.88 16 14 C 0.42 18.08 7.00 25.67 0.18 18.26 16 15 O -0.53 -24.66 17.40 -5.05 -0.09 -24.75 16 16 C -0.25 -9.04 5.89 -20.01 -0.12 -9.15 16 17 C -0.05 -1.32 9.67 22.43 0.22 -1.10 16 18 C -0.14 -2.53 10.03 22.28 0.22 -2.30 16 19 C -0.04 -0.69 10.01 22.30 0.22 -0.47 16 20 C -0.14 -3.40 10.01 22.35 0.22 -3.18 16 21 C 0.12 3.97 6.77 22.98 0.16 4.12 16 22 O -0.21 -8.59 9.01 -2.59 -0.02 -8.62 16 23 H 0.28 13.50 8.31 -92.71 -0.77 12.73 16 24 H 0.33 14.23 8.49 -89.69 -0.76 13.47 16 25 H 0.36 17.18 7.08 -89.70 -0.63 16.54 16 26 H 0.14 6.53 7.93 -2.91 -0.02 6.51 16 27 H 0.14 3.67 7.81 -2.91 -0.02 3.65 16 28 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 29 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 30 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -62.73 269.16 2.64 -60.09 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -0.20 Total: 32.50 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 2.27 Total: -15.34 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -1.35 Total: -86.78 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -0.11 Total: -33.37 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -62.73 2.64 -60.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261061496.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.357 kcal (2) G-P(sol) polarization free energy of solvation -62.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds