Wall clock time and date at job start Mon Mar 30 2020 04:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86793 * 120.00185 * 2 1 4 4 H 1.48504 * 109.47284 * 275.39948 * 3 2 1 5 5 H 1.48505 * 109.47170 * 35.40144 * 3 2 1 6 6 H 1.48500 * 109.47011 * 155.40096 * 3 2 1 7 7 C 1.40025 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99920 * 341.73718 * 7 2 1 9 9 C 1.40597 * 119.99998 * 161.74370 * 7 2 1 10 10 C 1.40825 * 120.71388 * 330.29540 * 9 7 2 11 11 C 1.37638 * 120.04056 * 179.97438 * 10 9 7 12 12 C 1.38403 * 121.57183 * 0.05016 * 11 10 9 13 13 C 1.38966 * 121.05104 * 359.95353 * 12 11 10 14 14 C 1.40557 * 119.64263 * 0.02562 * 13 12 11 15 15 C 1.41054 * 106.89827 * 180.23938 * 14 13 12 16 16 C 1.34915 * 107.79326 * 359.64029 * 15 14 13 17 17 N 1.36541 * 109.52653 * 0.36734 * 16 15 14 18 18 C 1.46497 * 125.57234 * 179.76313 * 17 16 15 19 19 C 1.50697 * 109.47567 * 265.00206 * 18 17 16 20 20 O 1.20829 * 119.99756 * 359.97438 * 19 18 17 21 21 O 1.34233 * 120.00381 * 180.02562 * 19 18 17 22 22 H 0.96998 * 119.99693 * 0.02562 * 1 2 3 23 23 H 1.08004 * 119.98370 * 0.02562 * 10 9 7 24 24 H 1.07998 * 119.21404 * 180.02562 * 11 10 9 25 25 H 1.08008 * 119.47183 * 179.97438 * 12 11 10 26 26 H 1.08003 * 126.10173 * 180.02562 * 15 14 13 27 27 H 1.08003 * 125.23923 * 180.09683 * 16 15 14 28 28 H 1.09005 * 109.47132 * 25.00255 * 18 17 16 29 29 H 1.09004 * 109.47349 * 145.00068 * 18 17 16 30 30 H 0.96700 * 117.00214 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3757 2.1122 -1.3939 5 1 1.5015 2.6170 0.8111 6 1 3.5922 1.4098 0.5828 7 6 2.0083 -1.2127 0.0005 8 1 1.5091 -2.1243 0.2941 9 6 3.3612 -1.2436 -0.3809 10 6 3.8677 -0.3153 -1.3109 11 6 5.1946 -0.3578 -1.6741 12 6 6.0605 -1.2998 -1.1464 13 6 5.6197 -2.2418 -0.2247 14 6 4.2737 -2.2415 0.1800 15 6 4.1253 -3.2907 1.1110 16 6 5.3247 -3.8931 1.2481 17 7 6.2417 -3.2707 0.4505 18 6 7.6553 -3.6363 0.3317 19 6 8.4749 -2.7842 1.2661 20 8 7.9337 -1.9561 1.9599 21 8 9.8063 -2.9444 1.3270 22 1 -0.4849 0.8401 -0.0004 23 1 3.2147 0.4310 -1.7389 24 1 5.5690 0.3608 -2.3881 25 1 7.0954 -1.3025 -1.4556 26 1 3.2127 -3.5669 1.6184 27 1 5.5292 -4.7349 1.8930 28 1 7.7821 -4.6870 0.5926 29 1 7.9877 -3.4740 -0.6937 30 1 10.2893 -2.3752 1.9416 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261073845.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:05 Heat of formation + Delta-G solvation = -28.946305 kcal Electronic energy + Delta-G solvation = -17050.431780 eV Core-core repulsion = 14197.256427 eV Total energy + Delta-G solvation = -2853.175353 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.70731 -39.63500 -36.24429 -35.81242 -33.49281 -32.41270 -30.21179 -27.85471 -26.97857 -24.76226 -22.18143 -21.19863 -20.34358 -19.24926 -18.16532 -17.33731 -16.64145 -16.10203 -15.98744 -15.01955 -14.92455 -14.09725 -13.67716 -13.31525 -12.89199 -12.64117 -12.59060 -12.01473 -11.87546 -11.55898 -11.48449 -11.12136 -10.95076 -10.70316 -10.58306 -9.90287 -9.71958 -9.59208 -9.17123 -8.40430 -7.08934 -7.03558 -6.76131 -4.41167 2.19437 2.22801 2.65003 3.07709 3.15318 3.22283 3.39524 3.53710 3.84196 4.01835 4.53248 4.81523 5.10293 5.20192 5.50083 5.57249 5.93193 6.25546 6.30752 6.43478 6.49169 6.76119 6.88959 6.91447 7.11821 7.32699 7.62660 7.79836 7.83654 7.89487 7.99119 8.12338 8.27357 8.39654 8.70300 8.77657 9.95874 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.034179 B = 0.007009 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.028828 B = 3993.965316 C = 4296.869210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.084 3.916 3 Si 0.918 3.082 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.241 1.241 7 C -0.417 4.417 8 H 0.095 0.905 9 C 0.140 3.860 10 C -0.298 4.298 11 C -0.031 4.031 12 C -0.277 4.277 13 C 0.142 3.858 14 C -0.176 4.176 15 C -0.142 4.142 16 C -0.038 4.038 17 N -0.474 5.474 18 C 0.133 3.867 19 C 0.450 3.550 20 O -0.487 6.487 21 O -0.522 6.522 22 H 0.288 0.712 23 H 0.100 0.900 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.131 0.869 27 H 0.149 0.851 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.658 -4.866 0.898 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.137 4.137 3 Si 0.744 3.256 4 H -0.195 1.195 5 H -0.220 1.220 6 H -0.163 1.163 7 C -0.444 4.444 8 H 0.113 0.887 9 C 0.136 3.864 10 C -0.318 4.318 11 C -0.050 4.050 12 C -0.300 4.300 13 C 0.037 3.963 14 C -0.180 4.180 15 C -0.167 4.167 16 C -0.159 4.159 17 N -0.161 5.161 18 C 0.008 3.992 19 C 0.289 3.711 20 O -0.371 6.371 21 O -0.335 6.335 22 H 0.099 0.901 23 H 0.118 0.882 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.149 0.851 27 H 0.167 0.833 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 12.271 -4.919 0.860 13.248 hybrid contribution 0.675 1.133 0.488 1.406 sum 12.946 -3.786 1.349 13.555 Atomic orbital electron populations 1.69693 1.08286 1.30733 1.33023 1.26308 0.94754 1.02207 0.90469 0.86172 0.81484 0.78943 0.78953 1.19484 1.22032 1.16342 1.19440 0.93107 0.96139 1.35736 0.88744 1.18157 0.91374 0.88672 0.88163 1.20585 0.95844 1.07416 1.07977 1.20119 0.93222 0.95268 0.96393 1.18948 0.98217 1.03534 1.09267 1.18044 0.91912 0.90238 0.96084 1.19084 0.92116 1.02772 1.04002 1.20456 0.96573 0.97822 1.01839 1.21307 0.89263 1.02848 1.02464 1.43183 1.04818 1.29121 1.39002 1.20814 0.80304 0.98593 0.99473 1.24316 0.80897 0.83197 0.82740 1.90817 1.72116 1.33208 1.40983 1.84510 1.21583 1.63535 1.63840 0.90124 0.88238 0.88885 0.89949 0.85119 0.83305 0.85902 0.86084 0.73318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.93 13.93 55.55 0.77 -20.16 16 2 C 0.08 2.20 5.41 -17.31 -0.09 2.11 16 3 Si 0.92 21.43 24.53 -169.99 -4.17 17.26 16 4 H -0.27 -6.05 6.71 56.52 0.38 -5.67 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.24 -5.94 6.86 56.52 0.39 -5.55 16 7 C -0.42 -11.41 9.53 -38.02 -0.36 -11.77 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 C 0.14 3.73 5.26 -104.75 -0.55 3.18 16 10 C -0.30 -7.51 7.19 -38.82 -0.28 -7.79 16 11 C -0.03 -0.70 9.94 -39.74 -0.39 -1.10 16 12 C -0.28 -6.21 9.96 -39.25 -0.39 -6.60 16 13 C 0.14 3.26 6.82 -83.99 -0.57 2.69 16 14 C -0.18 -4.40 6.21 -104.68 -0.65 -5.05 16 15 C -0.14 -3.11 10.74 -39.69 -0.43 -3.54 16 16 C -0.04 -0.70 11.34 -16.63 -0.19 -0.89 16 17 N -0.47 -8.95 2.28 -115.63 -0.26 -9.22 16 18 C 0.13 1.78 6.65 -5.20 -0.03 1.74 16 19 C 0.45 6.43 8.40 36.00 0.30 6.74 16 20 O -0.49 -9.42 17.18 -18.75 -0.32 -9.74 16 21 O -0.52 -5.33 13.42 -39.27 -0.53 -5.86 16 22 H 0.29 6.84 8.30 -40.82 -0.34 6.51 16 23 H 0.10 2.47 4.75 -52.48 -0.25 2.22 16 24 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 25 H 0.08 1.62 8.06 -52.48 -0.42 1.20 16 26 H 0.13 2.69 8.06 -52.48 -0.42 2.27 16 27 H 0.15 2.15 8.06 -52.48 -0.42 1.72 16 28 H 0.12 1.15 8.12 -51.93 -0.42 0.73 16 29 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.41 2.59 9.10 45.56 0.41 3.01 16 LS Contribution 268.17 15.07 4.04 4.04 Total: -1.00 -32.94 268.17 -6.07 -39.02 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -1.96 Total: 4.95 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -3.64 Total: -20.29 kcal Atomic # 7 Polarization: -29.88 SS G_CDS: 0.51 Total: -29.37 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.85 Total: -15.60 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.17 Total: 17.26 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.94 -6.07 -39.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261073845.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.070 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds