Wall clock time and date at job start Mon Mar 30 2020 03:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47316 * 179.97438 * 10 9 7 12 12 C 1.34496 * 126.57112 * 269.68431 * 11 10 9 13 13 O 1.34366 * 108.43340 * 179.89556 * 12 11 10 14 14 C 1.34301 * 109.47543 * 0.37850 * 13 12 11 15 15 Br 1.89100 * 125.79926 * 179.80719 * 14 13 12 16 16 C 1.34630 * 108.40159 * 359.76777 * 14 13 12 17 17 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 18 18 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 19 19 H 1.09007 * 109.47081 * 299.99904 * 10 9 7 20 20 H 1.08993 * 109.47302 * 59.99785 * 10 9 7 21 21 H 1.08001 * 125.78628 * 0.03573 * 12 11 10 22 22 H 1.07997 * 126.57694 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 6 1.0786 -4.8022 0.0117 12 6 0.5669 -5.4126 1.0955 13 8 -0.2681 -6.3811 0.6831 14 6 -0.2946 -6.4078 -0.6594 15 35 -1.3128 -7.5951 -1.7222 16 6 0.5263 -5.4453 -1.1199 17 1 -0.4849 0.8401 0.0004 18 1 0.3555 -2.3880 0.0092 19 1 2.6812 -3.7166 -0.8876 20 1 2.6880 -3.7126 0.8923 21 1 0.7879 -5.1646 2.1231 22 1 0.7250 -5.2099 -2.1550 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306541683.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:17 Heat of formation + Delta-G solvation = 12.958436 kcal Electronic energy + Delta-G solvation = -10297.592945 eV Core-core repulsion = 8093.541089 eV Total energy + Delta-G solvation = -2204.051857 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 244.979 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.64545 -36.96414 -34.59576 -33.33974 -32.27559 -29.73982 -27.38404 -24.62659 -22.54141 -21.30742 -19.35104 -18.29816 -17.28363 -16.58127 -15.79482 -15.17070 -15.02619 -14.90161 -13.98930 -13.28516 -13.20606 -12.77997 -12.67515 -12.36138 -12.12854 -11.90135 -11.65161 -10.95302 -10.78866 -9.51340 -9.01872 -7.94060 -5.24401 -0.15849 0.48250 1.40313 1.50665 1.53148 1.59624 2.41158 2.59434 3.39058 3.79659 4.08798 4.24065 4.29014 4.57559 4.87838 4.92448 5.12562 5.34688 5.49828 5.87282 6.26428 7.33303 8.06491 8.31515 9.29210 Molecular weight = 244.98amu Principal moments of inertia in cm(-1) A = 0.064110 B = 0.005099 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.641237 B = 5489.802950 C = 5671.485070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.248 4.248 8 H 0.081 0.919 9 N -0.742 5.742 10 C 0.218 3.782 11 C -0.196 4.196 12 C 0.006 3.994 13 O -0.169 6.169 14 C -0.053 4.053 15 Br 0.066 6.934 16 C -0.145 4.145 17 H 0.251 0.749 18 H 0.373 0.627 19 H 0.032 0.968 20 H 0.043 0.957 21 H 0.239 0.761 22 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.205 -17.334 -1.911 17.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.807 3.193 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.380 4.380 8 H 0.099 0.901 9 N -0.385 5.385 10 C 0.093 3.907 11 C -0.199 4.199 12 C -0.064 4.064 13 O -0.065 6.065 14 C -0.180 4.180 15 Br 0.149 6.851 16 C -0.167 4.167 17 H 0.060 0.940 18 H 0.204 0.796 19 H 0.050 0.950 20 H 0.061 0.939 21 H 0.255 0.745 22 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.582 -17.880 -2.128 18.075 hybrid contribution 0.174 1.360 0.058 1.373 sum -1.407 -16.519 -2.070 16.708 Atomic orbital electron populations 1.69838 1.06779 1.26209 1.59304 1.25642 0.96418 1.01337 1.03530 0.85145 0.77112 0.78761 0.78311 1.20309 1.22293 1.20101 1.19652 0.91705 0.85049 1.41550 0.90110 1.42597 1.05597 1.00738 1.89523 1.19078 0.91221 0.81348 0.99098 1.20737 1.04790 1.01285 0.93058 1.24633 0.91979 0.88702 1.01116 1.84090 1.53788 1.47983 1.20658 1.23942 1.06825 1.04080 0.83138 1.96782 1.69544 1.58761 1.60000 1.21812 0.98191 0.95505 1.01204 0.94007 0.79576 0.95002 0.93929 0.74475 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.91 13.06 21.65 0.28 -59.63 14 2 C -0.08 -4.43 5.50 84.86 0.47 -3.97 14 3 Si 0.98 45.82 29.55 68.60 2.03 47.85 14 4 H -0.28 -12.47 7.11 99.48 0.71 -11.77 14 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 14 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 14 7 C -0.25 -13.80 9.99 84.03 0.84 -12.96 14 8 H 0.08 4.24 7.83 -2.91 -0.02 4.21 14 9 N -0.74 -38.00 5.59 -347.18 -1.94 -39.95 14 10 C 0.22 8.72 6.77 85.63 0.58 9.30 14 11 C -0.20 -6.78 5.53 -19.95 -0.11 -6.89 14 12 C 0.01 0.17 12.01 66.96 0.80 0.97 14 13 O -0.17 -5.09 10.65 -3.07 -0.03 -5.12 14 14 C -0.05 -1.57 7.80 66.99 0.52 -1.05 14 15 Br 0.07 1.53 34.09 -20.37 -0.69 0.83 14 16 C -0.14 -4.68 10.82 22.22 0.24 -4.44 14 17 H 0.25 15.04 8.31 -92.71 -0.77 14.27 14 18 H 0.37 20.71 7.66 -92.71 -0.71 20.00 14 19 H 0.03 1.27 8.14 -2.38 -0.02 1.25 14 20 H 0.04 1.60 8.14 -2.39 -0.02 1.58 14 21 H 0.24 5.40 8.06 -2.91 -0.02 5.37 14 22 H 0.16 4.88 8.06 -2.91 -0.02 4.86 14 Total: -1.00 -63.71 228.90 3.52 -60.19 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.53 Total: 14.85 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 3.34 Total: -19.03 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -1.66 Total: -99.58 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.03 Total: -5.12 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Atomic # 35 Polarization: 1.53 SS G_CDS: -0.69 Total: 0.83 kcal Total: -63.71 3.52 -60.19 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306541683.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.151 kcal (2) G-P(sol) polarization free energy of solvation -63.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds