Wall clock time and date at job start Mon Mar 30 2020 04:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00114 * 2 1 4 4 H 1.48496 * 109.47266 * 269.99830 * 3 2 1 5 5 H 1.48500 * 109.47064 * 30.00419 * 3 2 1 6 6 H 1.48504 * 109.46962 * 149.99967 * 3 2 1 7 7 C 1.38813 * 119.99579 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00261 * 0.02562 * 7 2 1 9 9 N 1.36945 * 119.99841 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00081 * 179.97438 * 9 7 2 11 11 H 1.09006 * 110.33188 * 22.74364 * 10 9 7 12 12 O 1.44181 * 110.37717 * 260.36931 * 10 9 7 13 13 C 1.44386 * 106.08728 * 201.21859 * 12 10 9 14 14 H 1.09002 * 113.14562 * 273.55499 * 13 12 10 15 15 C 1.55655 * 105.02275 * 37.60951 * 13 12 10 16 16 H 1.09004 * 112.11793 * 218.74121 * 15 13 12 17 17 O 1.47589 * 104.06034 * 95.93874 * 15 13 12 18 18 C 1.34521 * 108.88319 * 31.93147 * 17 15 13 19 19 O 1.20829 * 125.91824 * 146.58481 * 18 17 15 20 20 C 1.51431 * 108.15479 * 326.56052 * 18 17 15 21 21 H 1.09010 * 110.36509 * 139.56165 * 20 18 17 22 22 O 1.42894 * 110.46709 * 261.84500 * 20 18 17 23 23 C 1.54043 * 104.28570 * 339.99661 * 15 13 12 24 24 H 1.09002 * 110.50162 * 115.35080 * 23 15 13 25 25 O 1.42899 * 110.50428 * 237.89994 * 23 15 13 26 26 H 0.96997 * 119.99898 * 359.97438 * 1 2 3 27 27 H 0.97003 * 119.99447 * 0.02562 * 9 7 2 28 28 H 0.96705 * 113.99557 * 295.45749 * 22 20 18 29 29 H 0.96699 * 113.99850 * 178.11977 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2023 0.0000 10 6 4.1121 -2.4710 0.0000 11 1 3.4852 -3.2702 -0.3956 12 8 4.5584 -2.7930 1.3326 13 6 5.6520 -3.7224 1.1746 14 1 5.3253 -4.7594 1.0973 15 6 6.4255 -3.2255 -0.0814 16 1 6.7794 -4.0512 -0.6987 17 8 7.5174 -2.4014 0.4726 18 6 7.8821 -2.9065 1.6649 19 8 8.9993 -2.9012 2.1251 20 6 6.6497 -3.4823 2.3303 21 1 6.8905 -4.4232 2.8253 22 8 6.1081 -2.5515 3.2696 23 6 5.4082 -2.3435 -0.8300 24 1 5.7460 -1.3074 -0.8538 25 8 5.2030 -2.8323 -2.1570 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3622 0.0011 28 1 6.6917 -2.3626 4.0172 29 1 4.5498 -2.3310 -2.6641 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308704366.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:54 Heat of formation + Delta-G solvation = -176.511233 kcal Electronic energy + Delta-G solvation = -18577.995471 eV Core-core repulsion = 15275.279209 eV Total energy + Delta-G solvation = -3302.716262 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.082 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.48844 -38.97262 -37.03427 -36.74918 -35.79092 -34.16549 -31.36329 -30.43912 -29.28714 -25.96538 -23.16830 -21.96146 -21.52717 -21.08791 -18.56433 -18.00085 -17.67004 -17.06043 -16.74787 -16.20713 -15.46567 -15.06379 -14.88299 -14.39347 -13.98578 -13.66414 -13.44967 -12.88085 -12.77558 -12.49683 -12.32485 -11.87653 -11.31482 -11.18590 -10.90235 -10.70379 -10.39090 -10.31279 -9.88159 -9.77803 -9.37736 -9.28034 -7.71621 -5.97055 -3.39545 1.55240 2.82088 3.26706 3.32137 3.35496 3.40476 3.67685 3.75738 4.09019 4.35894 4.42477 4.67613 4.74273 4.89583 4.97444 5.12576 5.32846 5.36109 5.48355 5.65071 6.03291 6.38651 7.07355 7.07983 7.38632 7.61348 7.74237 8.19996 8.93012 9.64849 9.79246 11.19337 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.029876 B = 0.007477 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.986866 B = 3743.761630 C = 3979.843292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.020 3.980 3 Si 0.882 3.118 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.266 4.266 8 H 0.096 0.904 9 N -0.705 5.705 10 C 0.292 3.708 11 H 0.091 0.909 12 O -0.357 6.357 13 C 0.055 3.945 14 H 0.120 0.880 15 C 0.061 3.939 16 H 0.131 0.869 17 O -0.337 6.337 18 C 0.462 3.538 19 O -0.445 6.445 20 C 0.052 3.948 21 H 0.103 0.897 22 O -0.503 6.503 23 C 0.069 3.931 24 H 0.086 0.914 25 O -0.556 6.556 26 H 0.264 0.736 27 H 0.367 0.633 28 H 0.380 0.620 29 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.888 -8.069 0.526 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.178 4.178 3 Si 0.711 3.289 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.395 4.395 8 H 0.114 0.886 9 N -0.353 5.353 10 C 0.143 3.857 11 H 0.108 0.892 12 O -0.273 6.273 13 C -0.006 4.006 14 H 0.138 0.862 15 C 0.005 3.995 16 H 0.149 0.851 17 O -0.254 6.254 18 C 0.301 3.699 19 O -0.327 6.327 20 C -0.011 4.011 21 H 0.121 0.879 22 O -0.307 6.307 23 C 0.008 3.992 24 H 0.104 0.896 25 O -0.364 6.364 26 H 0.074 0.926 27 H 0.201 0.799 28 H 0.228 0.772 29 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 13.066 -8.288 0.614 15.485 hybrid contribution 0.674 1.596 0.253 1.751 sum 13.740 -6.692 0.867 15.308 Atomic orbital electron populations 1.69693 1.05165 1.26411 1.55246 1.24687 0.95252 0.97407 1.00463 0.86602 0.79583 0.84682 0.78052 1.20601 1.21226 1.19975 1.19068 0.79619 0.95267 1.45503 0.88594 1.43004 1.04642 1.01316 1.86332 1.22963 0.89997 0.90551 0.82213 0.89162 1.89598 1.46857 1.60500 1.30311 1.24233 0.88443 0.96968 0.90936 0.86232 1.24918 0.85472 0.93336 0.95758 0.85149 1.87506 1.52296 1.50217 1.35418 1.24169 0.89683 0.74417 0.81664 1.90702 1.23483 1.51067 1.67461 1.23241 0.90942 0.94588 0.92281 0.87945 1.86932 1.44264 1.63371 1.36138 1.23227 0.94292 0.97684 0.84032 0.89590 1.86277 1.65746 1.60179 1.24216 0.92572 0.79928 0.77242 0.75243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.70 13.97 55.49 0.78 -26.92 15 2 C 0.02 0.56 5.50 -17.43 -0.10 0.46 15 3 Si 0.88 21.24 27.74 -169.99 -4.71 16.53 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 6 H -0.27 -6.41 6.52 56.52 0.37 -6.04 15 7 C -0.27 -7.16 10.41 -15.05 -0.16 -7.31 15 8 H 0.10 2.76 8.02 -52.49 -0.42 2.34 15 9 N -0.70 -16.05 5.18 -56.71 -0.29 -16.35 15 10 C 0.29 5.42 3.88 -3.29 -0.01 5.41 15 11 H 0.09 1.65 7.95 -51.93 -0.41 1.24 15 12 O -0.36 -6.77 10.07 -57.28 -0.58 -7.34 15 13 C 0.06 0.73 4.62 -24.50 -0.11 0.62 15 14 H 0.12 1.18 8.14 -51.93 -0.42 0.76 15 15 C 0.06 0.81 4.45 -24.77 -0.11 0.70 15 16 H 0.13 1.36 8.05 -51.93 -0.42 0.95 15 17 O -0.34 -5.19 10.84 -39.62 -0.43 -5.62 15 18 C 0.46 6.60 8.19 36.36 0.30 6.90 15 19 O -0.44 -7.12 18.00 -18.32 -0.33 -7.45 15 20 C 0.05 0.64 4.37 -26.71 -0.12 0.52 15 21 H 0.10 0.90 8.14 -51.92 -0.42 0.48 15 22 O -0.50 -7.19 12.33 -57.28 -0.71 -7.90 15 23 C 0.07 1.05 3.98 -25.43 -0.10 0.95 15 24 H 0.09 1.40 7.74 -51.93 -0.40 1.00 15 25 O -0.56 -7.54 13.33 -35.23 -0.47 -8.01 15 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 27 H 0.37 8.31 5.60 -40.82 -0.23 8.09 15 28 H 0.38 3.59 9.12 45.56 0.42 4.00 15 29 H 0.40 4.52 9.12 45.56 0.42 4.93 15 LS Contribution 257.77 15.07 3.88 3.88 Total: -1.00 -34.43 257.77 -4.33 -38.77 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -1.06 Total: 12.17 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -0.41 Total: 8.24 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.48 Total: -43.27 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -2.51 Total: -36.33 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.71 Total: 16.53 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -34.43 -4.33 -38.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308704366.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.745 kcal (2) G-P(sol) polarization free energy of solvation -34.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds