Wall clock time and date at job start Mon Mar 30 2020 04:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48506 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46905 * 299.99530 * 3 2 1 6 6 H 1.48494 * 109.47159 * 59.99796 * 3 2 1 7 7 C 1.37886 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.38992 * 119.99694 * 179.72490 * 10 9 7 12 12 C 1.39201 * 120.05592 * 0.02562 * 11 10 9 13 13 N 1.32009 * 120.03294 * 179.73325 * 12 11 10 14 14 C 1.32114 * 120.15010 * 0.56615 * 13 12 11 15 15 C 1.38904 * 120.10735 * 359.68862 * 14 13 12 16 16 O 1.35682 * 120.01820 * 180.02562 * 15 14 13 17 17 C 1.42899 * 116.99833 * 180.02562 * 16 15 14 18 18 F 1.39903 * 109.46830 * 299.99589 * 17 16 15 19 19 F 1.39894 * 109.47446 * 59.99747 * 17 16 15 20 20 N 1.32615 * 119.96677 * 0.02562 * 15 14 13 21 21 H 0.96999 * 120.00067 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 23 23 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 24 24 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 25 25 H 1.08004 * 119.98542 * 0.02562 * 12 11 10 26 26 H 1.08000 * 119.94936 * 179.71271 * 14 13 12 27 27 H 1.09003 * 109.47013 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7396 -4.9231 0.0063 12 6 0.3713 -5.1787 0.0116 13 7 -0.0684 -6.4235 0.0117 14 6 0.7879 -7.4296 0.0182 15 6 2.1546 -7.1814 0.0183 16 8 3.0323 -8.2161 0.0245 17 6 4.4229 -7.8871 0.0248 18 9 4.7264 -7.1435 -1.1207 19 9 4.7234 -7.1325 1.1638 20 7 2.6011 -5.9327 0.0125 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 3.1566 -3.4355 0.0009 25 1 -0.3311 -4.3583 0.0107 26 1 0.4246 -8.4466 0.0230 27 1 5.0130 -8.8035 0.0304 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308898862.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:28 Heat of formation + Delta-G solvation = -120.250434 kcal Electronic energy + Delta-G solvation = -17260.047631 eV Core-core repulsion = 13880.976256 eV Total energy + Delta-G solvation = -3379.071375 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.072 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.01742 -48.16728 -42.18597 -39.47997 -37.32388 -35.17564 -34.22616 -31.16608 -28.87019 -27.44859 -25.36615 -24.90406 -23.41411 -20.21472 -20.01853 -18.83616 -18.78589 -17.94347 -17.66537 -17.18302 -16.61516 -16.60957 -16.22095 -15.25042 -15.14682 -14.85265 -14.49990 -14.33119 -14.12397 -13.94792 -13.63484 -13.18289 -12.86705 -12.86538 -12.63710 -12.41729 -12.21990 -11.50021 -10.94458 -10.50627 -10.36499 -8.75131 -8.33192 -6.46525 -0.05440 0.23385 1.38791 1.41756 1.43103 1.55192 2.03155 2.38758 2.70478 2.71309 3.03194 3.30325 3.51061 3.56837 3.69896 3.77650 4.19059 4.46717 4.86536 4.93196 5.20418 5.44686 5.62080 5.74344 5.81115 6.43610 6.55390 6.66952 6.94786 7.25475 8.78145 Molecular weight = 245.07amu Principal moments of inertia in cm(-1) A = 0.032060 B = 0.005581 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.162169 B = 5015.559363 C = 5708.919662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.016 3.984 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.560 4.560 8 H 0.069 0.931 9 C 0.267 3.733 10 N -0.689 5.689 11 C 0.390 3.610 12 C -0.054 4.054 13 N -0.379 5.379 14 C -0.030 4.030 15 C 0.304 3.696 16 O -0.305 6.305 17 C 0.411 3.589 18 F -0.212 7.212 19 F -0.212 7.212 20 N -0.571 5.571 21 H 0.271 0.729 22 H 0.013 0.987 23 H 0.013 0.987 24 H 0.402 0.598 25 H 0.165 0.835 26 H 0.207 0.793 27 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.018 -15.756 0.063 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.598 4.598 8 H 0.088 0.912 9 C 0.145 3.855 10 N -0.316 5.316 11 C 0.148 3.852 12 C -0.222 4.222 13 N -0.092 5.092 14 C -0.193 4.193 15 C 0.120 3.880 16 O -0.215 6.215 17 C 0.323 3.677 18 F -0.193 7.193 19 F -0.193 7.193 20 N -0.309 5.309 21 H 0.080 0.920 22 H 0.030 0.970 23 H 0.031 0.969 24 H 0.237 0.763 25 H 0.182 0.818 26 H 0.224 0.776 27 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 6.693 -15.674 0.057 17.043 hybrid contribution 0.817 1.461 -0.002 1.674 sum 7.510 -14.213 0.055 16.075 Atomic orbital electron populations 1.70043 1.07541 1.28628 1.49552 1.25800 0.95803 1.03035 0.93831 0.85241 0.78784 0.78130 0.77897 1.18854 1.20213 1.20225 1.21505 0.93975 0.90920 1.53376 0.91244 1.18936 0.88273 0.82519 0.95729 1.45239 1.10575 1.00960 1.74828 1.19253 0.90026 0.86074 0.89828 1.22981 0.92962 0.95615 1.10612 1.68255 1.36884 0.98976 1.05126 1.22932 0.85608 1.01028 1.09735 1.20711 0.90123 0.85164 0.92009 1.86826 1.16982 1.30393 1.87343 1.24344 0.81250 0.91133 0.71022 1.93078 1.92541 1.81310 1.52416 1.93076 1.92602 1.80804 1.52867 1.67472 1.39034 0.99069 1.25350 0.91999 0.96959 0.96949 0.76277 0.81769 0.77644 0.73932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.54 13.29 21.45 0.28 -51.25 15 2 C 0.02 0.86 5.46 84.66 0.46 1.32 15 3 Si 0.98 41.66 29.54 68.60 2.03 43.69 15 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 15 5 H -0.28 -11.56 7.11 99.48 0.71 -10.85 15 6 H -0.28 -11.57 7.11 99.48 0.71 -10.86 15 7 C -0.56 -29.57 9.28 25.60 0.24 -29.34 15 8 H 0.07 3.54 7.60 -2.91 -0.02 3.51 15 9 C 0.27 13.27 4.65 85.63 0.40 13.67 15 10 N -0.69 -29.87 5.72 -348.51 -1.99 -31.87 15 11 C 0.39 15.77 7.66 132.99 1.02 16.79 15 12 C -0.05 -2.09 10.48 84.90 0.89 -1.20 15 13 N -0.38 -13.21 10.48 -194.24 -2.04 -15.25 15 14 C -0.03 -0.88 11.16 84.81 0.95 0.07 15 15 C 0.30 9.55 7.18 84.73 0.61 10.16 15 16 O -0.31 -7.30 10.42 -90.00 -0.94 -8.24 15 17 C 0.41 8.28 6.06 113.37 0.69 8.97 15 18 F -0.21 -5.69 16.58 44.97 0.75 -4.94 15 19 F -0.21 -5.69 16.58 44.97 0.75 -4.94 15 20 N -0.57 -21.33 8.30 -305.54 -2.54 -23.87 15 21 H 0.27 14.22 8.31 -92.71 -0.77 13.45 15 22 H 0.01 0.66 7.95 -2.38 -0.02 0.64 15 23 H 0.01 0.67 7.93 -2.39 -0.02 0.65 15 24 H 0.40 16.93 8.45 -92.71 -0.78 16.14 15 25 H 0.17 6.57 6.71 -2.91 -0.02 6.56 15 26 H 0.21 4.25 8.06 -2.91 -0.02 4.23 15 27 H 0.25 1.38 8.14 -2.39 -0.02 1.36 15 Total: -1.00 -63.59 257.31 1.99 -61.59 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.44 Total: 14.63 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 5.25 Total: 20.44 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -6.28 Total: -122.23 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.94 Total: -8.24 kcal Atomic # 9 Polarization: -11.37 SS G_CDS: 1.49 Total: -9.88 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -63.59 1.99 -61.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308898862.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.658 kcal (2) G-P(sol) polarization free energy of solvation -63.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds